LOC103024809 (LOC107689792,LOC105902344)


Basic Information

Item Value
gene id LOC103024809
gene name LOC107689792,LOC105902344
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10727848 ~ 10764714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238106.3
aaagaaataaaggttaACAAtggatttattggaattattgtCTTGTAGACGAGTCttatacaaacattttttttttgtatttttagtcgGTTTATGTATTTAAATCGCGAGTTTTTCTTATTATTGGTTATATATAGTGTGGGGTGGGTGTAGTTACTCCCTCTGTCCGGCAGGTGGCGCTTTAACTCCTGTATTCACTTTCCGGGGAAAAGCCTCTGGAAAGACGCGACGTCATGCAGTTCAAAATGGCGGCTGTGTGCTCCTGCGGCGGAGCCAGCTAAGCACTGAATCCGCTTCAGTTCGGCCGCGAGCGATGCGTTCCGCCCGGCGCGGCGCGAGGGGACTGTCCGAGCGCGTGCGGGATCAAACGGCGGCAGTGGAGAGCGACGCGTGCGCGCGGCGTTGGCTCGTAAGATGAGATCCCGGTACCGAGCTCGCGACCGATCAGAGCAGCAGCGGCGGAGTCCCGGGGTCAGCGGGCTTTCCTTCACCGTCCCACGGGCAGGGAGATGGCAGTAGGCGGACAATGGCGAGCCACACCTCCCCTCGCGCTCCCCGCGCTGTGAGCGGATCAGGCTGTGTTCACGGAGCCGTTAACGGCCAGAGCCCGGGCTCGCTGGACGCCGGGGCGGACGTCAGCTTGGGGATCTCACCAGACCGCGCAGAAGGTAGGGTCAGCCCGGGTTTGGTGGGCAACAGTTGGGGCACCAGCCCTGTTGAAGAAGAAGACTGTGGGGTTGGGGTGGTAAATGGGTTCCCTGAGCCATCATTTTTATCATCGTCATTGTCAAtctcatcatcttcatcaccatcttcatcaccacccaTTGTTGCAGCTGTGGAGGATGGTCGCTTGACCCCTGCCACTGCTGGGAACATGGACACAATGGCCCCTCCAGACCAGGGTCCAGAGAACTGGGGGATGGGGGATGGGAATGGTGATGGTGACTGTGGTGTAGAGATGGTCATGGAAACCAAGGCAAGTGAGTGTGTCCAGCTTTCTCCAGCCCCAGCTCTTGTATCTGCTGGTAAGCATCAACTGAACCAGATGAACTGTccatacacagacacaaacacagacagaggCTCTTCTTCAACTCATCCAGAGCTGCCCAAAAAGGTGCCCAATGGAAATGTAGGACATATAGGCCCTGTTGCGTTTCACACACGCAGAACCTGCATGGACCTAGAGAACGACCCACGGATATGCCCACCTGAAGGGTTCCTACACCCGAATGCTGCTCTGGAAAAAGGGGTGAGAGTGGGCAACTGTGGCTTCCTGGTGGTGAACACCCGTTCCTTATGGGATGCACCCGTTGCACACCCAGGTCCACCAGAAACCACTCGTTCCTCGCCCGGTTCCTGTGAGAGTCCCGGTCAGGAGAGCGGCCATGCCAGCCTGGAGGCATCCGATTCGAGCCAGCTGCAGGGCGCAATCAGCTGCGACCCCGACCCAGGACTGGATACCCTCTCAGAGCTCAGCGGGAAGCTGTCCATGTCCCCCTTGGCAGAAAATGCCCCAGAAGACTTTGGAGACACGGGCTTCTCTGCTAGGCCACAGTCCCTTAGGACTAACCCTGGGTACACAGTGTCGCTCAGCTGTGATGCCACCCCTCTCAGCCCTGAGGATGATGCAGGGTTCTTCGGGGATGAGGGCGGTGTGGACGGGTGTCTGAGCTCTGGGAATACCTACGAGGTGACCCGTCGCCAGAGCGCCCCTGACGCAATGCCAGAGGGCATCTGTGGTGACCCTAACTCCTCGTCGGATCAGAAAGTGGCCAAGAGGCATGGGATTGCCGAGTTCCTGACCAGAAGTCTGTTTTCCTGGAAGACCAAAGAGCACAAGCCTCCAGCTGCCCAGAGCAATCCAGGCTGGAGACTGTTTGGGAAAAGCTCCCCGAAGGACAACTCTCCCAAGGACTCCAGTACTGCACCACAGgAGTGTGAGGTGGGGGCGGAGCCAGGGACAGAACCAAACCCCTTGGCACAGCCAATGAGACGGAAGAATCTAGAGTTTGAGCCTTCGTCCACCACTGCACTCATCCTAGAGGACAGACCTGCGAATTTGCCAGCAAAATCTGAAGAAGAAGCTCAGAGACACAGACAGGAGTACAATGAGATGGTGGCAGGAGCCAAGAGGAGAGAAATGAAGGAGGCTCAGCGTAAAAAGAGGCAGATGAAGGAGAGATACAGACAGGAGGAGAACATCGCTCATGCCATGGTTATCTGGAACACGGAGGTTCTGCCCAACTGGGAAAGCATGAAAAACACCCGGCGGGTTCGAGAACTGTGGTGGCAGGGCCTACCCCCCAGCGTTCGTGGAAAGGTCTGGAGCCTCGCCATTGGCAACGAGCTCAACATAACTCCTGAACTGTATGAGATCTTCCTGTCTAGAGCCAAAGAGAAATGGCGAAGTTTTAACGAGACAAGTTCGGTCAATGAGAATGAAGATTGTGGTGCATCGCTGGCAGACAGGGAGTCCAGTTTGGACCTGATCAAGCTGGACATCTTCAGGACCTTCCCCTCTCTCTACATATTCCAGAAGGGTGGACCCTACCACGACTTGCTGCACAGTGTTCTGGGAGCGTACACCTGTTATAGACCAGATGTAGGATATGTGCAGGGAATGTCCTTCATTGCTGCTGTCCTTATTTTGAACCTTGAGGAGGCGGACGCCTTTATTGCCTTTGCCAACCTCCTCAACAAACCCTGCCAAATGGCCTTCTTCAGGGTGGACCACGATctgATGCTGAAGTACTTTGCAGCGTTTGAGGTTTTCTTTGAGGAGAATCTGCCCAAATTATTCCAGCACTTCCAGAACAACAGTCTAACTCCAGACTTTTACCTCATAGACTGGATCTTCACGCTGTACAGTAAGTCGCTGCCGTTGGACGTGGCCTGCCGCGTGTGGGACCTGTTTTGCCGGGACGGAGAAGAGGCATTATTCCGAACCGGCTTGGGAATCCTTCGCCTGTATCAGGATGTACTCCTGCAAATGGACTTCATTCACAGCGCACAGTTCCTGTCCCGTCTCCCAGAAAACactccagcacacacactcttcaacTGCATCGCCAACACACACATGATCAGCAACAACCGGAGGTGGAACCAGgtGTTCTCTGCTCTGATAAAAGATGGACCTAAAGAGACTGATAAAACAGCCAGTCCTGCGTTGAGAAGCTAATGGCTAACAGCTGCCTTTGGACTGCATACAAAGTCACTTTGTTTTTACAATGGATTAAAATCCGAGGGGAGATGGCCGTCGCCTGCCTTCAGCTTGTGCTCTGCAGTATTAAGGAGGCAGACAACCGGTCGTTCTGTGGCAGCGAGACGCCTGAGTGAGGACATGCTGATCTGGACTGCTTGAATGAACTCAGCTCATGGTCCATCTCTTTTGAAAataactttgtgtgtgtgtgtgtgtgggtgtgtttgagtGAGAGTTGTGTGCGTCAGGTTCTCATGTAATGTGCCAGCCTTTTCAATGTTGCTCTCagtaaaacactcacacacttacatagACTCACATTCctgcacacacaagcacatccACGCAGCCGCAGCTGTAGGGCTGCATGATTACGGTAGACTGTAACTGAGGTCATTTTGACTGTTGTGATTGTTATTAATTGAGTGCAATACATAGTAACCGCCCACTCccatgattcttttttttttccctttatttctttttcttcttttttttttttgcactaatcCCGGAAAAACACTCCAGTGCCAGCAAGAGGTTGATATGCCCTCTTGACACAGTCCACTAACATAATGATGGGGATTGATTAGAGATTGCTTTTCTCAACACAGTGTTTATAACTACAATTGCTTGATTAAAGTGTGGCTGTCGTTGTACTAAAAGCAATACGTTCATTGTGGCCTTTGGCAGTAGACGAATTGCAAAGGCCACCATACATGGTTAATGGTGCAGCCCTACATACAGTTGTGGTGGGAAGTCTACATACACTCATCTATGGACATGAATGTCATGGCAATATTGGGGGGTGGGTATATGAAATCAACACACAATTTAATACATAtagcattaaaaatatttatacagtgCACTCTACTTGGATATTTGACCTCTCTTCTAGGCAAAAATAGATTAATAGAGTAGAGATTAAAGAAATGTGTTGGTTTCCTGGCACAGAacttattttaaacacattccACATATACATCTGATAGATCTGAGGTCAGGACTACCTGAGGGTCACTCAAAAGGTTAATATTAGCCTCTTTTGTCCATTCCAGATACAGATACCTTTTAGACCTCCTTTTATGTGTGTTTGGAGTTGCGCTGAAGATTTCTGACATAGCCCTCCTTTGATGTTTTTACTATCAACATTGAAGAGCAGTATACCAGTTTCACTGGCAGCAAAACCACCCCAATGCAAAGCATAATGCTCCcaacaccatgtttaacagttggtactgggggtgggcaatatggccctaaagtaatatcacaatattttacgGTATTTTGGAGATAACAGTACTCttgccgatatgacaaaacacgaaataaaaaatatatattttatcacttGTAACTGAGAAGAATTTGAgaagatttgtaacagaagtcaatgatccagaatgtcctgatactaatactaatactaatgcactccaaatatctccatatatccaggactgtaaaatgaatgattctggacagatataatctattgTTTCTAATAGATATATTAtgga

Function

NR:

description
PREDICTED: TBC1 domain family member 12-like isoform X2

GO: NA

KEGG:

id description
K24795 TBC1D12; TBC1 domain family member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238106.3 True 4737 mRNA 0.50 13 10727848 10764714

Neighbor

gene id symbol gene type direction distance location
LOC111193128 NA coding upstream 61174 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 365803 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 391132 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 435555 10282665 ~ 10292293 (+)
LOC103026171 LOC108413038 coding upstream 475353 10242588 ~ 10252495 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 812525 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 1045519 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 1121522 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 1238079 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 1390209 12154923 ~ 12174659 (+)
G79399 NA non-coding upstream 75524 10651855 ~ 10652324 (+)
G79395 NA non-coding upstream 92836 10629959 ~ 10635012 (+)
G79381 NA non-coding upstream 169837 10477663 ~ 10558011 (+)
G79384 NA non-coding upstream 170344 10506337 ~ 10557504 (+)
G79379 LOC108430231,LOC107583545 non-coding upstream 259123 10452410 ~ 10468725 (+)
G79417 NA non-coding downstream 11985 10776699 ~ 10777628 (+)
G79423 NA non-coding downstream 25968 10790682 ~ 10792779 (+)
G79424 NA non-coding downstream 52523 10817237 ~ 10818744 (+)
G79444 NA non-coding downstream 173784 10938498 ~ 10955362 (+)
G79458 NA non-coding downstream 352875 11117589 ~ 11119528 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 170980 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 772810 9883006 ~ 9955038 (+)
spata17 NA other upstream 1173123 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 2177880 8529854 ~ 8549968 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 36643 10801357 ~ 10814914 (+)
G79654 NA other downstream 789968 11554682 ~ 11555139 (+)
G79717 NA other downstream 1136381 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 1300130 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 1458563 12223277 ~ 12279506 (+)

Expression


Co-expression Network