LOC103026171 (LOC108413038)


Basic Information

Item Value
gene id LOC103026171
gene name LOC108413038
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10242588 ~ 10252495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239248.3
CAGCGCGctctctctgtatatatctCTCCTCGCGCTGCTGCTGGAGGCGCGTGGCTCTCTGTAGCGCAAGAACAGTTCCTGCACTCACCTCCACCCAGCTGGACCTTCAGACACAGAGGAAGAGCGCGCGTGTGTTTATGTCAGTGTTTaggtgtgtgtaggagtgtgtaagCGTGTGTTTTTGGGAGTTTTATACAATGAGCTGCCTGGATGTCGCGCGTCCGGTCTACAGCCACCCTGCAGCATTCAGCAGCGCAGCGCAGtctctctctgcagtgagCAGTCCGCCGTTGCTGTCTCTCCGCGGGGACTCCATGGAGGGCTCTGGGTCGGAGTTGCAGGAGAAGGAAAAGCAGGACGTGGCAGAAGCAGAATACCTGAGCTCTCGCTGTGTCCTCTTTACCTACTACCAGGGTGACATAAGCAGTGTGGTGGACGAGCACTTCTCCAGAGCACTCAACACCTGCAGCAGCACACCGAGCAAGAGGAGGGGCCAATCAGGCACAGAACCTTCATCTCCAAACAGTCGGCGGAGCTTCCCTCCATCATTCTGGGACAGCAATTACCCATCTCCACCTAGCCGACCGAACTGTGATCCCCCGGGTACCCCAGCTTACTCCATCGACCCTTATGCCCATGGACTGCACCCAGGGTTACCTCATGCACATCCTCACCCACACCCCTCAGAGTCCTGGGGGTATGCACAGACTCAGGCTTACGGACCCCCAAGGCCACTTCATGAACTCTATACCCCTCCAGGACTGGAGCCCCACTACAGCCCCCTGCTTATGCCCACAGTCCGACCAGCCCACCTGCCTGGCCTGCCGGGACACTACGAGGTGGGGAAGCTGGAACCAACGCCCACGTGGCCACTGCTGCCACCGCCGGGGGACGTGGCTATAGCCCTCAACATGGACCCAGGCTTACCGGCACATAAGAAAGGAAAGGAGCTGTACTGGTTCTAATGACCGGCCTGGCCATCGACCCGCCAATTAAAGCTGTGGAGCGCTGGAGAGCGGCCCATTGTACCGGAGCCTTGCCAGGGTCTGGAAGTGTGCACCATGGAGATAAAGACAGAGGGATGGAGGAAAAGAGCGAGAGGGGTCCAGCTCTGTCCATGCAcacctctctgtctctgtaatccttccattctctctctctctttgtggtGTAACAAAACCCCTTCAGCTCCTGGGACAGTTAAATGCCTGAGCGAGGGAGAAATTGAGACGTTTTTACCCTGGACAGAAAGGAAATATACAAATAGAGAAACAACAAAGAGGAACATACAAAAAGGAACTGACAACAGACTGGAACAGCCTTTTGTATCGATGACTCTGTGGTAGTGTTGTATGAATGGACAAATATGGATCTCCATTATTTCTGTTGTTTGTGTTggatttttcattttcagtaaattaatatgtatatttaaaagacgatttttaaaacagatcatTTTGAGTGTATTGCTTCATAGTGGATCCTAGATGTGGCACAGACATAGACACTGCTAAATATGTAAGTAGGGCTGCTAAAATCAATTgatgatatatacatatatagtaccagtcaaatgtttggacacacctctactcattcaacatgttttctttctttttatg

Function

NR:

description
PREDICTED: transcription cofactor vestigial-like protein 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239248.3 True 1625 mRNA 0.52 4 10242588 10252495

Neighbor

gene id symbol gene type direction distance location
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding upstream 423143 9766166 ~ 9819445 (+)
trmt61b NA coding upstream 1608395 8623401 ~ 8634193 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding upstream 1675800 8552448 ~ 8566788 (+)
LOC103031442 LOC103359616 coding upstream 1735427 8469601 ~ 8507161 (+)
erich1 NA coding upstream 1800033 8415207 ~ 8442555 (+)
LOC103026492 NA coding downstream 30170 10282665 ~ 10292293 (+)
LOC103026974 NA coding downstream 76473 10328968 ~ 10336716 (+)
LOC103027561 NA coding downstream 99919 10352414 ~ 10362045 (+)
LOC111193128 NA coding downstream 411963 10664458 ~ 10666674 (+)
LOC103024809 LOC107689792,LOC105902344 coding downstream 475353 10727848 ~ 10764714 (+)
G79179 NA non-coding upstream 50373 10189740 ~ 10192215 (+)
G79193 NA non-coding upstream 76944 10160728 ~ 10165644 (+)
G79183 NA non-coding upstream 111271 10131019 ~ 10131317 (+)
G79174 NA non-coding upstream 129267 10107630 ~ 10113321 (+)
G79165 LOC103027354 non-coding upstream 183842 10056467 ~ 10058746 (+)
G79341 NA non-coding downstream 93021 10345516 ~ 10348155 (+)
G79345 NA non-coding downstream 135909 10388404 ~ 10391520 (+)
G79334 NA non-coding downstream 148999 10401494 ~ 10423882 (+)
G79379 LOC108430231,LOC107583545 non-coding downstream 199915 10452410 ~ 10468725 (+)
G79381 NA non-coding downstream 225168 10477663 ~ 10558011 (+)
LOC103029457 LOC108441045 other upstream 287550 9883006 ~ 9955038 (+)
spata17 NA other upstream 687863 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 1692620 8529854 ~ 8549968 (+)
G78818 NA other upstream 1704906 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 2513587 7656307 ~ 7729001 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 285584 10538079 ~ 10556868 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 548862 10801357 ~ 10814914 (+)
G79654 NA other downstream 1302187 11554682 ~ 11555139 (+)
G79717 NA other downstream 1648600 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 1812349 12064844 ~ 12076211 (+)

Expression


Co-expression Network