srp54 (srp54,LOC107729255,LOC107693187,LOC107733904)


Basic Information

Item Value
gene id srp54
gene name srp54,LOC107729255,LOC107693187,LOC107733904
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23242171 ~ 23248849 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240478.3
tagttagctagctaattttcGCTGTAGCGAATACACTAGCAGCCACTGATTCTAggtcagttttgttttcctgtctCTCTACACTCGTTTCTAGCTGAACAGGCTGAACGAATAATAACTGACTCCAGATCAGCGCACTGAGTCCCAGCGTTACCTCGGAAGTAGAAAGGGTTTATGGGAGTTTTGTGTGTTAGCTGACGTCTGCCTGCTTTCTACTGAACCAGCTGTGTCGAAGGGAGCTAAGaacagACGGCAACATTGCAACTCATTTGCTGGATTAATCGGGTCATtcgcacccacacacacacaactacagaagaagaagaactctgAACGGGGGAATCCCCCACCTTAGCGAGGAGGTTGCCTTTGTCTAACACGTCGCCTCTTCCTAAACTGCAAACATGGTGTTAGCTGACTTGGGGAGGAAAATCACCTCCGCGCTGAGATCTCTCAGCAATGCCACCATCATCAACGAGGAGGTTTTGAATGCTATGCTTAAAGAAGTATGTGCAGCCTTACTGGAAGCTGATGTCAACATCAAATTGGTAAAACAGCTGAGGGAGAATGTCAAGGCAGCCATTGATCTTGAGGAGATGGCCTCTGGGCTGAATAAGAGAAGAATGATCCAGCATGCTGTTTTCAAGGAGCTTGTCAAGCTGGTAGACCCTGGAGTCAAAGCATGGACGCCTACTAAGGGTAAAAACAACATCATCATGTTTGTAGGTCTTCAGGGCAGCGGGAAAACCACAACATGTTCTAAGTTGGCATACTACTACCAAAGAAAAGGATGGAAAACATGTTTGATTTGTGCTGACACTTTCAGAGCAGGTGCCTTTGACCAGCTGAAGCAAAATGCAACAAAAGCCAGAATTCCATTTTATGGAAGCTACACAGAGATGGATCCCGTCATCATAGCTTCTGAGGGAGTGGACAAATTCAAGTCAGAAAACTTTGAAATAATCATCGTCGACACCAGTGGTAGACATAAGCAAGAAGACTCTCTGTTTGAAGAAATGCTTCAGGTTTCAAATGCTGTGCAACCCGACAACATTGTGTACGTGATGGACGCATCCATCGGTCAGGCCTGTGAGGCTCAAGCTAAAGCCTTCAAGGACAAGGTAGATGTGGCCTCCGTCATTATTACTAAGCTTGACGGCCATGCTAAGGGTGGTGGTGCGCTCAGTGCAGTCGCTGCCACAAAGAGTCCCATAATTTTCATCGGCACAGGAGAACACATTGATGACTTTGAGCCTTTTAAAACTCAGCCCTTCATCAGCAAGCTGCTTGGTATGGGAGACATTGAAGGACTGATAGACAAAGTGAATGAACTGAAGCTTGATGATAATGAGGAGCTGATTGACAAACTCAAACATGGCCAGTTTACACTCAGGGACATGTATGAGCAGTTCCAGAACATCATGAAAATGGGACCTTTTGGACAGATCATGGGTATGATCCCAGGCTTTGGAACAGATTTTATGAGCAAAGGCAATGAACAGGAATCTATGGCCAgattaaagaaactcatgacCATAATGGACAGCATGAATGACCAAGAACTGGACAACAAAGATGGTGCTAAGCTCTTCAGTAAGCAGCCAAACCGGGTTCAAAGGGTGGCACGAGGATCTGGAGTCGCCACTAGGGACGTGCAGGAGCTCCTCACACAGTACACAAAATTCGCCCAGATGGTAAAGAAAATGGGTGGCATTAAAGGATTATTTAAAGGAGGGGACATGTCAAAGAACGTTAACCCGTCTCAGATGGCCAAGTTGAACCAGCAGATGGCGAAGATGATGGACCCCAGAGTGCTCCACCACATGGGTGGAATGGCTGGACTGCAGTCAATGATGCGGCAGTTTCAGCAAGGGGCCGCTGGCAACATGAAAGGAATGATGGGATTCAACAACATGTGAACTTTAGAGCCTTAAATTAAAGATGGCAAAGAAAACAACCGGATGGTTTTTAAGATGCAAACTTGAGTGAAGgaaggtttgttttttttgcctcaaatattgtaattaatcaAACCACGTCAAATATTCAgaggcttatttatttattaagcctaTTTTTCCTGAGGAAGCCTTGGCTATACAAACTGTTTGACTGGAAGGTTTGATCAATGAGAAGCATGTATATTGAAATATGTTCAGCTGTGTCTAAAGCCATTAGGCTGTAATGCTCAAATCAggtttatcaaaaaaaaaaattgttattattatttttttttttaccagatcaAATTTCTGTGTTCAGACAAGCAGTCAGCGTGCATTTGTGTGCTGAAGTGGCAGTGTTGATATGTAAAACTGGTCTAAATTTTAATTGGCAAGTTCTAGTTAAATCTGTAATTTGTAGACTGTGCAGAACAATTAAATGTTTACAGGAGAATTCTATGATTTTGTGGAGAGACATTGCTGATTACCACATAGACTGAcagagacacatacacacacagacatgttaATTGCCAGCCATTGGCTTAGCTTCTTTTACCACAtataaaccaaattaaaaaaaaatacagattctGTGATTTATTCTTCCCCTTAATTGTGATGGAGGTTCTTACAGACGGAATATCTGAGCGATCGTggttaattgtgtttattttttttctgaatttgccATAGAGAAGCTTTGGCTTTGTATCTGAGACAAAACTACAGTAGTGGCAGATTAGTCTGTGGCAATATTTTgtcataacattataataaatttaTATAGCAACATTTTAA
>XM_015603404.2
tagttagctagctaattttcGCTGTAGCGAATACACTAGCAGCCACTGATTCTAggtcagttttgttttcctgtctCTCTACACTCGTTTCTAGCTGAACAGGCTGAACGAATAATAACTGACTCCAGATCAGCGCACTGAGTCCCAGCGTTACCTCGGAAGTAGAAAGGGTTTATGGGAGTTTTGTGTGTTAGCTGACGTCTGCCTGCTTTCTACTGAACCAGCTGTGTCGAAGGGAGCTAAGACGGCAACATTGCAACTCATTTGCTGGATTAATCGGGTCATtcgcacccacacacacacaactacagaagaagaagaactctgAACGGGGGAATCCCCCACCTTAGCGAGGAGGTTGCCTTTGTCTAACACGTCGCCTCTTCCTAAACTGCAAACATGGTGTTAGCTGACTTGGGGAGGAAAATCACCTCCGCGCTGAGATCTCTCAGCAATGCCACCATCATCAACGAGGAGGTTTTGAATGCTATGCTTAAAGAAGTATGTGCAGCCTTACTGGAAGCTGATGTCAACATCAAATTGGTAAAACAGCTGAGGGAGAATGTCAAGGCAGCCATTGATCTTGAGGAGATGGCCTCTGGGCTGAATAAGAGAAGAATGATCCAGCATGCTGTTTTCAAGGAGCTTGTCAAGCTGGTAGACCCTGGAGTCAAAGCATGGACGCCTACTAAGGGTAAAAACAACATCATCATGTTTGTAGGTCTTCAGGGCAGCGGGAAAACCACAACATGTTCTAAGTTGGCATACTACTACCAAAGAAAAGGATGGAAAACATGTTTGATTTGTGCTGACACTTTCAGAGCAGGTGCCTTTGACCAGCTGAAGCAAAATGCAACAAAAGCCAGAATTCCATTTTATGGAAGCTACACAGAGATGGATCCCGTCATCATAGCTTCTGAGGGAGTGGACAAATTCAAGTCAGAAAACTTTGAAATAATCATCGTCGACACCAGTGGTAGACATAAGCAAGAAGACTCTCTGTTTGAAGAAATGCTTCAGGTTTCAAATGCTGTGCAACCCGACAACATTGTGTACGTGATGGACGCATCCATCGGTCAGGCCTGTGAGGCTCAAGCTAAAGCCTTCAAGGACAAGGTAGATGTGGCCTCCGTCATTATTACTAAGCTTGACGGCCATGCTAAGGGTGGTGGTGCGCTCAGTGCAGTCGCTGCCACAAAGAGTCCCATAATTTTCATCGGCACAGGAGAACACATTGATGACTTTGAGCCTTTTAAAACTCAGCCCTTCATCAGCAAGCTGCTTGGTATGGGAGACATTGAAGGACTGATAGACAAAGTGAATGAACTGAAGCTTGATGATAATGAGGAGCTGATTGACAAACTCAAACATGGCCAGTTTACACTCAGGGACATGTATGAGCAGTTCCAGAACATCATGAAAATGGGACCTTTTGGACAGATCATGGGTATGATCCCAGGCTTTGGAACAGATTTTATGAGCAAAGGCAATGAACAGGAATCTATGGCCAgattaaagaaactcatgacCATAATGGACAGCATGAATGACCAAGAACTGGACAACAAAGATGGTGCTAAGCTCTTCAGTAAGCAGCCAAACCGGGTTCAAAGGGTGGCACGAGGATCTGGAGTCGCCACTAGGGACGTGCAGGAGCTCCTCACACAGTACACAAAATTCGCCCAGATGGTAAAGAAAATGGGTGGCATTAAAGGATTATTTAAAGGAGGGGACATGTCAAAGAACGTTAACCCGTCTCAGATGGCCAAGTTGAACCAGCAGATGGCGAAGATGATGGACCCCAGAGTGCTCCACCACATGGGTGGAATGGCTGGACTGCAGTCAATGATGCGGCAGTTTCAGCAAGGGGCCGCTGGCAACATGAAAGGAATGATGGGATTCAACAACATGTGAACTTTAGAGCCTTAAATTAAAGATGGCAAAGAAAACAACCGGATGGTTTTTAAGATGCAAACTTGAGTGAAGgaaggtttgttttttttgcctcaaatattgtaattaatcaAACCACGTCAAATATTCAgaggcttatttatttattaagcctaTTTTTCCTGAGGAAGCCTTGGCTATACAAACTGTTTGACTGGAAGGTTTGATCAATGAGAAGCATGTATATTGAAATATGTTCAGCTGTGTCTAAAGCCATTAGGCTGTAATGCTCAAATCAggtttatcaaaaaaaaaaattgttattattatttttttttttaccagatcaAATTTCTGTGTTCAGACAAGCAGTCAGCGTGCATTTGTGTGCTGAAGTGGCAGTGTTGATATGTAAAACTGGTCTAAATTTTAATTGGCAAGTTCTAGTTAAATCTGTAATTTGTAGACTGTGCAGAACAATTAAATGTTTACAGGAGAATTCTATGATTTTGTGGAGAGACATTGCTGATTACCACATAGACTGAcagagacacatacacacacagacatgttaATTGCCAGCCATTGGCTTAGCTTCTTTTACCACAtataaaccaaattaaaaaaaaatacagattctGTGATTTATTCTTCCCCTTAATTGTGATGGAGGTTCTTACAGACGGAATATCTGAGCGATCGTggttaattgtgtttattttttttctgaatttgccATAGAGAAGCTTTGGCTTTGTATCTGAGACAAAACTACAGTAGTGGCAGATTAGTCTGTGGCAATATTTTgtcataacattataataaatttaTATAGCAACATTTTAA

Function

symbol description
srp54 Predicted to enable 7S RNA binding activity and endoplasmic reticulum signal peptide binding activity. Predicted to contribute to GTPase activity. Acts upstream of or within exocrine pancreas development and neutrophil chemotaxis. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Predicted to be active in cytosol. Used to study Shwachman-Diamond syndrome. Human ortholog(s) of this gene implicated in severe congenital neutropenia 8. Orthologous to human SRP54 (signal recognition particle 54).

NR:

description
signal recognition particle 54 kDa protein

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048500 signal recognition particle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0008312 7S RNA binding molecular_function

KEGG:

id description
K03106 SRP54, ffh; signal recognition particle subunit SRP54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240478.3 True 2744 mRNA 0.42 17 23242171 23248849
XM_015603404.2 False 2739 mRNA 0.42 17 23242171 23248849

Neighbor

gene id symbol gene type direction distance location
npas3 npas3 coding upstream 87586 22857844 ~ 23154585 (+)
akap6 akap6 coding upstream 397793 22711082 ~ 22844378 (+)
LOC103036290 psmc1,LOC108443803 coding upstream 550011 22686731 ~ 22692160 (+)
tonsl tonsl coding upstream 579044 22638733 ~ 22663127 (+)
edrf1 edrf1,LOC107729289 coding upstream 604378 22627304 ~ 22637793 (+)
sec23a sec23a,LOC107689296,LOC107589610 coding downstream 1811 23250660 ~ 23267862 (+)
clec14a NA coding downstream 60196 23309045 ~ 23312366 (+)
foxa1 foxa1,LOC106611236 coding downstream 116582 23365431 ~ 23368635 (+)
tyro3 tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 coding downstream 205152 23454001 ~ 23473086 (+)
LOC103028567 NA coding downstream 226410 23475259 ~ 23498557 (+)
G82606 NA non-coding upstream 15261 23225765 ~ 23226910 (+)
G82596 NA non-coding upstream 33372 23208495 ~ 23208799 (+)
G82588 NA non-coding upstream 36727 23204815 ~ 23205444 (+)
G82579 eapp,LOC107733856,LOC107729290 non-coding upstream 47881 23127953 ~ 23194290 (+)
G82583 NA non-coding upstream 77108 23164013 ~ 23165063 (+)
G82748 NA non-coding downstream 224355 23473204 ~ 23473455 (+)
G82754 NA non-coding downstream 249870 23498719 ~ 23499013 (+)
G82753 NA non-coding downstream 250187 23499036 ~ 23552919 (+)
G82763 NA non-coding downstream 332299 23581148 ~ 23581751 (+)
G82766 NA non-coding downstream 341651 23590500 ~ 23590893 (+)
G82609 baz1a other upstream 10853 23230430 ~ 23231318 (+)
G82488 NA other upstream 884036 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 1568733 21520907 ~ 21673438 (+)
G81763 NA other upstream 3568533 19673127 ~ 19673638 (+)
G81761 NA other upstream 3576124 19665736 ~ 19666047 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 626590 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 660833 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 890540 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 1647045 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 1685315 24934164 ~ 24936186 (+)

Expression


Co-expression Network