sec23a (sec23a,LOC107689296,LOC107589610)


Basic Information

Item Value
gene id sec23a
gene name sec23a,LOC107689296,LOC107589610
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23250660 ~ 23267862 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240480.3
aaccaacacaacacacacccactcGACGTGGCAGGGCCACTTCGGCCATGTTCGTTGCTACGTCAGCGCCTGAAATCGTTCAGCGAGCCTGGAGAGCCGAGCGGACTGAGCGCTGAGAGAACCCGGCGGCTTTAGTTCATAGTTCCTTGAGGGTGCAATGACAACCTTCCCAGAGTTCATTCAGCAGAACGAGGACCGAGATGGGGTGCGTTTCAGCTGGAATGTTTGGCCCTCCAGTCGCCTGGAGGCCACACGTATGGTGGTACCCGTGGCTTCACTTTTTACCCCACTGAAAGAGCGCCCAGACCTCCCCCCAATACAGTATGAACCAGTGCTGTGTAGCCGGGCCACCTGCCGAGCTGTACTCAATCCTCTGTGCCAAGTGGATTACAGAGCAAAATTGTGGGCTTGCAATTTCTGTTATCAAAGAAATCAGTTCCCTCCAACTTATGCTGGAATATCAGAAGTGAACCAACCAGCTGAACTGCTTCCACAGTTCTCCACCATTGAATATGTAGTCCAGCGAGGTCCTCAGATGCCCCTCAACTTTTTGTATGTGGTAGACACATGTATGGAAGATGAAGACCTGCAAGCTTTAAAGGAATCTCTGCAGATGTCTTTGAGTCTGCTTCCCCCTACTGCCCTGGTTGGCCTCATCACGTTTGGCCGCATGATCCAGGTCCATGAGCTGGGCTGTGAAGGCATCTCTAAAAGCTACGTCTTTAGAGGAACCAAAGATCTCAATGCCAAACAGTTGCAgGAGATGCTTGGATTGACCAAACCAGCTGCGGCTCAGGCAGGCAGAGGACCACAGCAACCTCAGGCTCCTCCCTCTAACAGATTCCTGCAGCCAGTGCAGAAGATTGATATGAATTTGACTGATCTCCTGGGAGAGCTGCAAAGAGACCCCTGGCCTGTCACTCAGGGCAAACGACCCCTCAGGTCATTAGGAGTAGCATTATCCATTGCTGTTGGACTTTTggagtgCACTTTTCCAAATACTGGGGCTCGAATTATGACCTTCATTGGTGGTCCAGCCACCCAGGGCCCAGGCATGGTTGTAGGAGATGAACTGAAAACACCCATCCGCTCCTGGCATGATATAGAGAAAGACAATGCAAAGTTCATGAAGAAAGCCACTAAACACTACGAGGCTTTAGCCAATCGAGCAGCCGCTAATGGACACATTATTGACATCTATGCCTGTGCCCTGGACCAGACCGGACTAGCAGAAATGAAGTGCTGCACCAACTACACAGGGGGTTACATGGTGATGGCAGACTCCTTCAACACGTCCCTGTTTAAGCAGACGTTTCAGAGGGTTTTCACCAAGGATGTGCAGGGAtcttttaaaatggcttttgcAGGAACTTTAGAGATTAAGACGTCAAGAGAGATTAAGATATCTGGAGCAATTGGTCCATGCACCTCATTGAATGCCAAAGGACCCTGTGTAtcagaaaatGAAATTGGAACAGGTGGTACCTGCCAGTGGAAGATATGTGGTCTGGACCCCAACACCACGCTGGCAATTTACTTCGAAGTCGTCAATCAGcACAATGCCCCAATTCCACAAGGGGGCCGAGGGGCCATACAGTACGTGACTCAGTACCAGCACTCTAGTGGACAGAGACGCATCAGAGTCACCACCATTGCCAGAAACTGGGCAGATGCACAAACGCAGATTCAGAACATCGCAGCATCATTCGATCAGGAGGCCGCTGCTATTCTCATGGCCCGCCTGGCCGTCTACAGGGCCGAATCAGAGGAAGGGCCGGATGTTTTGCGCTGGCTTGATCGACAGCTTATTCGTCTGTGTCAGAAATTTGGAGATTACCACAAAGATGACCCAAACTCTTTCCGTTTCTCTGAGACGTTCTCTCTATATCCCCAGtTCATGTTCCATCTGAGAAGGTCTCCATTCCTCCAAGTGTTCAACAATAGCCCAGATGAGAGCTCCTACTATAGACACCATTTCATGAGGCAGGATCTGACTCAGTCTCTTATCATGATTCAGCCAATCCTTTACGCCTACTCCTTCAACGGCCCCCCTGAGCCGGTGCTTTTGGACAGCAGTAGCATTCTGCCGGACCGAATCCTCCTAATGGACACATTCTTCCAGATCCTCATTTACCATGGAGAGACGGTGTCTCAGTGGCGTAAAGCTGGCTACCAGGACATGCCTGAGTATGAGAACTTCCGCCACCTGCTGCAGGCTCCAGTGGATGATGCTCAGGAGATCCTGCACTCACGCTTTCCCATGCCCCGCTACATCGACACTGAGCATGGAGGCAGCCAGGCTCGGTTTTTGCTGTCCAAAGTCAACCCCTCTCAGACCCATAACAACATGTATGCCTGGGGACAGGAGTCTGGAGCACCCATCCTAACAGATGATGTGAGTTTGCAGGTATTCATGGATCATCTGAAGAAGCTAGCTGTGTCCAGTGCTGCCTAAGAGTTTGCCCAAGTCACCCAACCGCACCTTCACCTGTCCGGCATCAGTAAAATATGCCATACATACTTAGGAGAGCTACAATAGGACTGGCCTTTGATCTCCCTTTCCCTTCCCCATTTACTTTTGTTTATATCGAACCCAAATCCTTTACACTAGACTCTTTCTGTGCAGAGAAAATCATGTAAGTTTGTTCTGCTCAGTAATGAATAAATGCTCATGAGATGCTCTTAGTGGATTCAGTATAAAAGATAACACTACATGTGAATTGTGCTACAGGAGAAAAGCCGTCTTTTACATTATATCACTCAGTATCAGTCATCTAGTCATGACCTAAAGGCAGTAGGCTTTgctatactgtatttatgttcagCAGTGATGTATGATCTCATATTAAACAAAAGAAGAATTAAGAATTGGAAATCACAGCTTACCTACAGCTGAACTAGACTGCTAGATGAAAGAGTGTGAAGCGTGTGATTGGAGTGAATGCTTTAGTGCTGCCTCAAGCCCCAGATGAAATTCCTTTGTCTTGCAGTCTCTGGCAGTTTCTGGTTCTACTTTAGTCGCCATGTGATGCAGGAATTAATGTCCCAGCCATGAACATGCAGGCTTATGGAATATGAAAGCTGCCTTATTCTATCCAATGTTCTGCTATTTATGCCTCATTTTTAACAGTATTATAGAACTATTTACAtgatatttctaataaaatggcctcATCATTA

Function

symbol description
sec23a Predicted to enable GTPase activator activity and zinc ion binding activity. Acts upstream of or within pectoral fin morphogenesis; protein targeting; and skeletal system development. Predicted to be located in cytosol. Predicted to be extrinsic component of membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in several structures, including cartilage element; hatching gland; notochord; polster; and tail bud. Used to study craniolenticulosutural dysplasia. Human ortholog(s) of this gene implicated in craniolenticulosutural dysplasia. Orthologous to human SEC23A (SEC23 homolog A, COPII coat complex component).

NR:

description
protein transport protein Sec23A

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0051216 cartilage development biological_process
GO:0035138 pectoral fin morphogenesis biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0030868 smooth endoplasmic reticulum membrane cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14006 SEC23; protein transport protein SEC23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240480.3 True 3180 mRNA 0.48 20 23250660 23267862

Neighbor

gene id symbol gene type direction distance location
srp54 srp54,LOC107729255,LOC107693187,LOC107733904 coding upstream 1811 23242171 ~ 23248849 (+)
npas3 npas3 coding upstream 96075 22857844 ~ 23154585 (+)
akap6 akap6 coding upstream 406282 22711082 ~ 22844378 (+)
LOC103036290 psmc1,LOC108443803 coding upstream 558500 22686731 ~ 22692160 (+)
tonsl tonsl coding upstream 587533 22638733 ~ 22663127 (+)
clec14a NA coding downstream 41183 23309045 ~ 23312366 (+)
foxa1 foxa1,LOC106611236 coding downstream 97569 23365431 ~ 23368635 (+)
tyro3 tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 coding downstream 186139 23454001 ~ 23473086 (+)
LOC103028567 NA coding downstream 207397 23475259 ~ 23498557 (+)
LOC103030470 mapkbp1 coding downstream 237794 23505656 ~ 23549535 (+)
G82606 NA non-coding upstream 23750 23225765 ~ 23226910 (+)
G82596 NA non-coding upstream 41861 23208495 ~ 23208799 (+)
G82588 NA non-coding upstream 45216 23204815 ~ 23205444 (+)
G82579 eapp,LOC107733856,LOC107729290 non-coding upstream 56370 23127953 ~ 23194290 (+)
G82748 NA non-coding downstream 205342 23473204 ~ 23473455 (+)
G82754 NA non-coding downstream 230857 23498719 ~ 23499013 (+)
G82753 NA non-coding downstream 231174 23499036 ~ 23552919 (+)
G82763 NA non-coding downstream 313286 23581148 ~ 23581751 (+)
G82766 NA non-coding downstream 322638 23590500 ~ 23590893 (+)
G82609 baz1a other upstream 19342 23230430 ~ 23231318 (+)
G82488 NA other upstream 892525 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 1577222 21520907 ~ 21673438 (+)
G81763 NA other upstream 3577022 19673127 ~ 19673638 (+)
G81761 NA other upstream 3584613 19665736 ~ 19666047 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 607577 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 641820 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 871527 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 1628032 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 1666302 24934164 ~ 24936186 (+)

Expression


Co-expression Network