pex13 (pex13)


Basic Information

Item Value
gene id pex13
gene name pex13
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11810233 ~ 11823175 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242500.2
TATGCAGCCGTAATTACGGTAAAGTCCAGACGCATATGAAAGCAGTAGCGCAGCAGTGGGTGGATGTCGGTTGGTTACCTCTGAATAATGTCTCAGCCGCCTCCAAAACCCTGGGAGAGACGAATTCCCGGGGCGATGCCATCCCCAGTAAACTACCGGAGTAGTGACTTTATTGGTGCAGGAGTGAATGGACCTCCAGCATCAGGTCCGCCAGTTTTAACACGTATGGCTCCACCAGTCCCACCTCGGCCTGTCCAGCAGACCTACCGTCCGGCCTACAACTCCTTCCCCTCTTCTTATAGTCCGTATGGCTATGGCGGAGGCTACAGCCCCTACAGTTATGGAGGGTATGGCCTCGGGGGCGGTTTGGGCTACAGCCGTTTCCGTATGGAGGACGTTCCACCCAGTCGCTTCGTCCAGCAGGCGGAGGAAAGCAGCAGAGGTGCTTTCCAGTCCATCGAAAGCATCGTGCACGCCTTCTCTTCAGTCAGCATGATGCTGGATGCTACCTTCTCGGCTGTCTACAACAGCTTCCGCGCCGTGCTGGACGTGGCCAACCACTTCTCCCGCCTGCGTGTCCACTTCACCAAAGTGCTCTCGGCCTTCGCCCTGGTGCGCACACTGCGCTACCTCTATCGTCGCATGCAGAGGATTCTGGGGTTGCGGCCTGACCTGGAGGCAGAGGACCTGTGGGCGGACAACCTCGTGCTGGCTGCTGGGACCAGAGGACCAGGGCTGGACGATTCCAAAGCAAACACTGTGAAGTCATGGCCCATTTTCCTGTTCTTAGCTGTGGTTTTCGGAGGCCCGTACCTGATCTGGAAGCTGCTACGCTCTGAGGAGGGCACAGAGGATAGCGGCACTAACTGGGCAAACGGTGAAGATGACCATGTGGTGGCTCGAGCAGAGTATGATTTCACTGCTGCTTCTGAGGAGGAGATCTCCATCCAGACTGGAGATATGCTCAATTTGGCTCCTAAGGAGCAACAGCCGAGGGTGCGAGGCTGGCTAATGGCCAGTGTAGACGGACAGACCACGGGACTCGTCCCGGCCAACTACGTCAAAATCTTGGGCAAGCGGAGGGGCAGAAGGCAGGCGGAGCTGGAGAGGTTGGCACATGTCGAGGAGGGTCAGCAGGCTCTACAGCCAGATCGAGGTCCAGTTACAGCCTCAGCAGGACATGCAGACCCAGAGGAGCTGCTAGAGTCTGTGTACACAGAAACAccagcatcacacacacatttaccagGCAGAGCTAACACAGAGTGCACCGGGGACTGTGGAGAAGATTGATTTGTGaatgtttaagtgtgtgtggaaAGGGTGAGTCTGTATTtctgtgtgaatgagtgtgtgaggtATAGGCATCATATTTgatctgtgagtgtgtgaaattGCTTTCCATTTTAAGATTCCAGAAatttaataacagaaaaatgtCATCAGATTGAGAATGCAGGGAGAAACAGCCATACTTGAAAGTTATAATCAGGATGGTTTGAGATGGACAATGCACAATATGGAGAGAATACTAATTGCCGTTagtattacaataattacaataaaaaatataaaatgacaaatactgtttttaatttCTTGTACTGAGTgcagtaatatttatttaaaattgccTGCACGTCATCCAATTAAacaagaacaaatgaaaaggtTATTTAGTGTTCTTATAGCACTAATGAAATCCACTATATGCtcagaaaaggaaaataaacttttttgtttgatacaataaaatagaagAATGCAACCAGTGTTTTAAAATTGATTATGAATACACTGCCTGATTTGCGTTCTCACTGTATGTAGGAGTTTGATATAATTTCtgctagaatttcccctcggggatcaataaagtatctgtctgtctgtctgtctgcaca

Function

symbol description
pex13 Predicted to be involved in protein import into peroxisome matrix, docking. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be part of peroxisomal importomer complex. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 11A. Orthologous to human PEX13 (peroxisomal biogenesis factor 13).

NR:

description
peroxisomal membrane protein PEX13-like

GO:

id name namespace
GO:0016560 protein import into peroxisome matrix, docking biological_process
GO:0005777 peroxisome cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13344 PEX13; peroxin-13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242500.2 True 1901 mRNA 0.49 4 11810233 11823175

Neighbor

gene id symbol gene type direction distance location
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding upstream 172249 11577239 ~ 11637984 (+)
LOC103024809 LOC107689792,LOC105902344 coding upstream 1045519 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 1143559 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 1448188 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 1473517 10328968 ~ 10336716 (+)
kiaa1841 kiaa1841 coding downstream 63061 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 179618 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 331748 12154923 ~ 12174659 (+)
LOC103024200 LOC108438733 coding downstream 365583 12188758 ~ 12261237 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding downstream 467222 12290397 ~ 12312938 (+)
G79695 NA non-coding upstream 25406 11779824 ~ 11784827 (+)
G79694 NA non-coding upstream 26084 11773690 ~ 11784149 (+)
G79692 NA non-coding upstream 62654 11747044 ~ 11747579 (+)
G79684 NA non-coding upstream 107859 11700680 ~ 11702374 (+)
G79683 NA non-coding upstream 118069 11691816 ~ 11692164 (+)
LOC111193193 kiaa1841 non-coding downstream 11594 11834769 ~ 11874478 (+)
G79710 NA non-coding downstream 32598 11855773 ~ 11868709 (+)
G79712 NA non-coding downstream 42214 11865389 ~ 11869720 (+)
LOC111193192 NA non-coding downstream 168497 11991672 ~ 11997924 (+)
G79752 NA non-coding downstream 202411 12025586 ~ 12026206 (+)
G79654 NA other upstream 255094 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 995319 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 1253365 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 1855195 9883006 ~ 9955038 (+)
spata17 NA other upstream 2255508 9495449 ~ 9554725 (+)
G79717 NA other downstream 77920 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 241669 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 400102 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1898726 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 2102694 13925869 ~ 13952198 (+)

Expression


Co-expression Network