exo1 (LOC107744706,LOC107081139)


Basic Information

Item Value
gene id exo1
gene name LOC107744706,LOC107081139
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12533857 ~ 12549090 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244576.3
GGCTGGACGTCAAGTTTTGCCGCTAAAGTCGAAATGGGTTAGTGGTGCGAGCTGAGCTGCAAAGGAGAGACGGAGAGAAGGCGATAAACCACTCCCGGTcattgtgattaaaaatgttACTTGAAGCGGTTCGGTTTTAGAGACAGTTTATATAGCCTGTGGAGAGAGTCGGGCTGTGTTAAAGTTAGGCTCGGTCTGAGACTCGGAGATCGGAGTAACGCGGGACCGCTGAGCTAGCCTgctttagctaacgttagttagTTTAGCCCGTTAGCCGGTTTTGGCGCTGACCGACTGGTTTATGGATTAAATCTAAAGAAACGATGAAGCGATAACTCGATATTATCCACCGACATTTTAACTGGCGTACAGATTTCTACATTTGATTCTTTTTAACGGTCATTTGATTCCTGAACCGATTCACTTTACATTAGCTAGCTATCAGTTCACGGTCGGTAGCTAAGTCAGTTATCCAGCAGTTGTGAGTGTAAACCCGGGTCAAAATGGGGATTCAGGGgctgctgcagtttattaaagaCGCTTCAGAGCCCGTCCATGTGAAGAAGTACCGGGGACAGACCGTGGCTGTGGACACTTATTGCTGGCTGCACAAAGGAGCGTTTTCCTGCGCTGAAAAGCTCGCTAAAGGAGAGCCCACTGACCAATATGTGTCCTACTGCATGAAGTTTGTGGACATGCTCCTGTCTTTTGGAGTCAAGCCAATCTTGGTGTTTGATGGACGGAACCTTCCATCAAAGCAGGAAGTGGAGAAAGCGCGGCGAGAACGTCGTGAAGCGAACTTGCAGAAAGGGAAACAGCTGCTGCGGCAGGGGAAGCTGTCAGAAGCCAGAGACTGCTTTACTCGCTGTGTTAATGTCACGCCCACCATGGCCCATGAAGTCATTAAGGCTGCCAGGACACGCGGGGTGGACTGTGTTGTGGCCCCTTATGAAGCCGATGCCCAGCTGGCCTTCCTGAACAAAAGTGGAATCGCTCATGCCGTCATCACAGAAGACTCAGACCTGCTGGCATTCGGCTGCAAAAAGGTGTTATTAAAGATGGACAAGCAGGGGAACGGTCTGGAGATTGACCAGTGCCACCTGGGACGCTGTCGGTCGCTGGGTGACATCTTCACGGAGGAGAAGTTCCGCTACATGTGCATCCTGTCAGGCTGTGACTACCTGGCCTCGCTGTATGGCATCGGCCTGGGCAAGGCCTGCAAGCTGCTGAGAATGGCCAACAACCCTGACATCCTCAAGGTGATCCGGAAGATTGGTCAGTACCTGAAGATGAACATCACTGTGCCTGAAGAGTACGTCGAGGGCTTTGTGAAGGCCAACAATACATTCCTGTACCAGCTTGTGTTTGACCCCATTAATAGGAAAGTCGTGCCCCTAAACCCCTACCCTGAGAACATCGATCTGTCCACGCTCAGCTACGCTGGAGTGAATGTCGGGGATAAGCAAGGTCTGCAAATGGCTCTTGGAAATGTGGATATATACACTATGAAGAGAATCGATAATTTTGACCCGGATGCTCCACCAGCACAGCCTATCAAAGCACCACGCAGTCGAGGCTGGAACGATAAGTGTGAGGTTCAAAGCCCAGCCCGTGGCAGCATCTGGAACAGGGGTTACCTGCCAAGCTCCTCCCAGCCTCAGATACCGTCCTCCCCTGACAGACCTTCTCCTACCCGGGGAAAAGAGAGGCTCGTTACAGTGAAGGGCCTAAAGCTCTCCAGCAGAGAGCCACAGGTCAAAAGACCTCGTGAAGAGTCAGAAACCTCTGAAGTGGACATTTTGGAGCAGTACTCGATTAGTCCAAAGAGGCAGTGCAGATCAGAGCCTGCTCGACAAGCTCCAATCACTGTTGAAGTGGACTGCAGTACATCCAAGGACACCAATTCCAGCATGGTTTCCAGCAAGCCTCGACCTCGTAACCGTTTTGCCACGCTGCTGCAGTGGAGGAACCAATCAGATGGGAACGATGGAGAGCAGGGAACACGCAGCAGATTCTTTGGTAGCGTTAATGATTCGGGAGCTGAATCTCAGGAGCAGAAGTCCTCTGTGAAGGAAGAATCATCCAGTTCTAAGAAAACAGATGACATGCCCTTACCAGCCAAAGACCTAGTATTGAAGAATGAGACTGTAGACCCACTTACTGAACCCTCCAGCTTTTCACCTTCCCCTTCCCCTCCTCCTGGCCATGCCAGCATGGGCCTCAGTGCCTTTAAGTGGTCCAGTAGCACTGGAGGACATTCCAGCAGTGTTTCAGCAGCAGCTTCATCTGCCACTACAGACTGCCGAAGGACGCCCAGCACTCCCTCAGGCCTTTCAGCCCTACGCCAGTTCCAGAGAAAAAAGGATACTCTATCTTGGGGAGAATCATCCCAGCGCTCCCAATCGTCCTCTCCTGTAGAGGGCGCTGCCGACATAGAAAGTCCTCCTGGTTCTCCTCCCTCTCAAGACAGTGCTTACTTCTCTCAACCCAGCAGCAACCCCTCTAGTGTGGAGGATTATTCACCAACCACAAGTCATCAGGTCATTGGAGACTCACCTGAAAAGGAGACAGATCATTGGAAAGGTTGCGATACTTCAGCGATTCCCAGCAACTCCCCTGTAGAGGAGGTCAAATGTACACCCATGAGATCAAAGGTGTCAGGTCTACCCCGCACGCGGCCCAGTGAGCAGGATAAAGGTGTGAAGATCAAACCTTCTGCCCCAGCCAGGGTGAGCGGCTTGAGAAAGAAGACTGGCACTCTGGGCAAGAAGGGAGCCGTTACAAACGAGAACAACCCAGGACTGCAGGCCACCATCAGCGGCCTCTGGAAGAACTTCGGCTTTAAAAAGGAAAGCTCAATGTTAAGCCCAAGTAAGAAAGGGAAGCCCATGTCACCAGTGAAGGACAACGTGTAGAAGAACAGACCTTGATGGAACAAACACCTCCACTTCCAGCTGTGGCCGGTTTGCCAGATGTGCTGATACTATTGGAAGCTGGTGACTCTCTGTAACAACAGCTGATCTTTAGAAACACTGGGCTTGGATTACATACCTGCTGTAATACTCTTTAAACATACTATGTATGTTCATGTCTTAATATGGTTTTagttcaataaatataaaataaatcagtttaaa

Function

NR:

description
exonuclease 1

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0006310 DNA recombination biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0005634 nucleus cellular_component
GO:0005488 binding molecular_function
GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity molecular_function
GO:0048256 flap endonuclease activity molecular_function

KEGG:

id description
K10746 EXO1; exonuclease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244576.3 True 3137 mRNA 0.50 13 12533857 12549090

Neighbor

gene id symbol gene type direction distance location
jade1 jade1 coding upstream 195482 12315094 ~ 12338375 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding upstream 220919 12290397 ~ 12312938 (+)
LOC103024200 LOC108438733 coding upstream 272620 12188758 ~ 12261237 (+)
LOC111193190 NA coding upstream 359198 12154923 ~ 12174659 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding upstream 493147 12002793 ~ 12040710 (+)
LOC103045432 NA coding downstream 16022 12565112 ~ 12579232 (+)
LOC103046040 NA coding downstream 192269 12741359 ~ 12748024 (+)
LOC103025054 slc16a12,LOC107669179,LOC107753457,LOC107758438 coding downstream 260577 12809667 ~ 12820803 (+)
LOC103047786 NA coding downstream 422341 12971431 ~ 12986601 (+)
LOC103021501 NA coding downstream 440641 12989731 ~ 13021102 (+)
G80028 NA non-coding upstream 2008 12528626 ~ 12531849 (+)
G80026 yipf4,LOC106576945 non-coding upstream 10757 12522704 ~ 12523100 (+)
G79924 NA non-coding upstream 250276 12281845 ~ 12283581 (+)
G79914 NA non-coding upstream 372077 12156315 ~ 12161780 (+)
G79903 NA non-coding upstream 424753 12108809 ~ 12109104 (+)
G80031 NA non-coding downstream 32710 12581800 ~ 12667992 (+)
G80114 NA non-coding downstream 272868 12821958 ~ 12823957 (+)
G80138 pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 non-coding downstream 326683 12875773 ~ 12886581 (+)
G80166 LOC103025372 non-coding downstream 406226 12955316 ~ 12957340 (+)
G80176 NA non-coding downstream 438373 12987463 ~ 12987842 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 254351 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 457646 12064844 ~ 12076211 (+)
G79717 NA other upstream 628472 11901095 ~ 11905385 (+)
G79654 NA other upstream 978718 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1718943 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1172811 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1376779 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1964320 14513410 ~ 14534923 (+)
G80648 NA other downstream 2176837 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 2181418 14730508 ~ 14798604 (+)

Expression


Co-expression Network