LOC103045432


Basic Information

Item Value
gene id LOC103045432
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12565112 ~ 12579232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244578.3
TGTGCTCTATGCTGTCAGCTTGTGTGGATCAGGGAGGCGGGTAGCCGGGCTGCAGAACCTGTTTGCTCGCTTTACACTTATCTGACAGGAGCTCTATGCTCGGCCAAGTGAGCAAGCGTTTCAGATTTAGCCGAAGTTTGGAGGAGTCAACATCTCCTCCTGACACCTCCAGACCTCTCCCATCAGCATCTTCAGATCACTTTTGGACCTCTATTTTGTGATATGCAGCAGTAAACGTCATAACGAGACAATGaATGGGGAAATAGAGAGTTCTGTCTCCTTAGACGGAAAAGTCTTGGAGAACAACGGGAATGAAGCTGGGCTTGATGTTGGATTTAAAGGTCCCTTGTTTAATCTGAAAGGGGATGCAGATCAGATTGTAGCTGCCACAATTCACTTGGACCACCTTGCAAAAGAAGACAAGCTGAAATTGCTGGAGATCATTCAGCCTTATGATCAAAACCTTGAAGTAAAGACCAAAGGAGGtctaaatgctggattgAGTCTTGGTGATGTACTCCTGAAGGGTGAAACCCCAAAacttcaagcaccagcagttgaAGTCCGTGGGCTGAATGGAAAGTTAAATTCCCCAAATATAAAAGGTGACCTCACAGTCCCGTCAGTTAATGGAGAAGTCCCACAGATGACTTTAAAGGGCTCTGCACCTGATCTGACTGTAGGAGAGAGTGGGAAATTCACATTGCCAACTGTTGATGTGTCTGCACCTCAACTTCAGGGTCCCAATCTAGATGGCAACATCAAAATGCCCAATGCTAAGGTCTCTACTCCAACACTGAGCTCTCCAGACTTCTCTGCAGATGTAAAGAACCCAGACGTGAAGTTTAAGGCTCCTAGGTTTAAGATGCCAAACTTTGGTCTACCTGCTGAAAAAGCGAAGCTTGATGGGGGTGTGGCAGTAAATACTCCAGAGCTGAAATCTCCAGACATGAGTGTGTCAGTCCCAAAGGCAGATGTGGATCTCAAAGCACCTCAGGTTGATGTGAACTTGCCCAAAGCAGAAGTAAAAGGACCAAATCTGAAGGCAGAAGTACCTGATGTTGATGTTAAGGCTCCCTCTGGAAAATTCAAACTGCAAAAGCCCAAATGGAATCTCGGCAAGCCTAAAGTAAAAGCTCCAAATGTCGATGCAGAGATGAAGACACCAGAAGCTGAACTGTCTGTACCAGATCTCAAAGCTGACATCAAGGCTCCTGGTGTTAAAATGGATTTGCCTAATGCTGAGCTCAGCAGCCCTGAAGCAGATATTAACACACCAAATCTTGACATTGATGCTCCCTCTGGTAAAATTAAATGGCCCAAATTCAAGAAGCCAAAAGGAAAAGTGAAAGGGCCATCAGTGGAcattgacacagatgtgcagacTCCAGATCTAAGTCTGTCTGCCCCGAATGTGAATGCAGATATCAATGCACCAAAAGTTGATGTCAAAGTTCCAGATGTAGATGTGTCCCTTCCCAAGGCAGAGTTGGAAACTCCCAAAGTAAATGTTAACACTGGAAAACCCAAGTTTCCCACTCAGAAGCTACCAAAGATGAACCTAAGTAGACCAAAGGTGGAGGGACCCAACATTGATGCAGACCTAAAGACACCAGGGGTAAATGTCTCAGCCCCTGATGTGAACGTGAACCTGCCCAAAGCTGAACTTGATGGGCCAGGTCTAGATGTCAAGGCACCCAATCTTAACCTCTCTGCACCAAAAGTAGAAGGTGATCTCTCTGTTCCAGACCTAAATGTCAAAGCTCCAGATGCAGACATCAAGGGCCCATCAGGCAAACTGAAGATGCCCAAAATAAATTTCCCAAAGGCGAAGGTGAAGGGGCCAAATGTAGATCTTGATGGTAACCTTGGTGCCCCAAATATTGATGTCTCAGTCCCAGATATTCCGAAAGTTGAGGGAGAACTCGCCTTACCCAATGCTGAACTTGATGGGCCAGGTCTAGATGTCAAGGCACCCAATTTTAACCTCTCCGGACCAAAAGTAGAAGGTGATCTCTCTGCACCAGACCTAAATATCAAAGCTCCAGATGCAGACCTGAAGGGCCCATCAGGCAAACTGAAGATGCCCAAGATAAATTTCCCTAAGGGAAAGGTGAAGGGGCCAAATGTAGATCTTGATGGTAACCTTGATGCCCCTAATATTGATGTCTCAGTCCCAAATATTCCAAAAGTTGAGGGGGAACTCGGCGGACCCTCACTGAAGCTACCCACTGCAGATCTTAAAGGACCTGAACTAAACGCACAAACGCCAGAACTAAACCTCTCTGCACCTAAAATTGAAGGAGATGTCAGTGCACCCACAGTTAATGTAGACCTCCCAAGTGCTGACCTGAAAACTCCTAATGTTGAAGCTCCATCTGGAAAATTCAAGCTTCCTCATATTAAGATGCCCAAGTTTGGTCTCTCTGCGCCAAGGGTGAAAGGACCAAAAGTTTCTGGGAATCTACAAACACCAGATGCAAATGTAAACTTGCCATCAGCAGAGCTAAAAGGGCCTGATCTAGACCTAAAAGCACCTGACCTTAATGTCTCCACTCCTGATATGAAAGGTTCCATATCTGCTCCAGCTGTAGATGTGGATTTAGCCAAAGCTGACCTGAAAGCTCCAGGTCTTAACCTTGAGGCAAATACTCCAGATCTGAAACTCTCTGCACCAGATGTGGACCTAAGCTTGCCAAAAGGAAGCATTGAGGTCCCTGATGTAGATCTAAACGTCCCTGATGTTGATGTTCCTTCTGCAAAATTAAAGACACCAAATTTGAAATTTCCCAAAATTAATCTCGCTGGGCCAAAGGTCAAGGGCCCCAAAGTGGATGTTGGTGCAGACCTAAATGCACCAGATGTTGATGTGAACTTACCCTCAGCGGATATCCGAGGACCTAATctaacatctaaacatctaaacataaaAGCGCCTGAAATGGATCTCTCTGTTCCCAAAATTGAGGGCTATGTTGCTGCTCCAGCTGTAGATTTAGATTTACCTAAAGCTGACCTGAAAGCTCCAGGTCTTAACCTTGAGGCAAATACTCCAGATCTGAAACTCTCTGCACCAGATGTGGACCTAAGCTTGCCAAAAGGAAACATTGAGGGCCCTGACGTAGATCTGAATGTCCCTGAGGTTGAAGTTCCATCTGGGAAATTAAAGATGCCACATTTGAAATTTCCCAAATTTAATCTCACTGGGCCGAAGGTACAGGAGCCTAATCTGGATGCTAAAGCAGGTTTGGATGTTTCTGTCCCTAAGATTCAAGGAGAAATAAATACACCAGATGTTGATCTAAGTCTACCCAAAGCTGAGGTCAGTGTCCCAGATGTTGACGTAAAGTTACCCAAAGCTGAAGTTGATGTCCCGGATGTTCAGGTCAAGAACCCAAAGTTCAAAGTCCTTACCATCAAAAAACCCAAAGCTACTGTATCGACCCCAAGTGTAAACGCACCAGAAGCTTCAATAAATGCAGATTTAAAAAGTGTCAATGTCTCAGCCCCAAGGGTAGATGCAGATGTTAAAGCTCCTGAGGTCAATTTAAATGCACCTACAGCTGATCTTAAAGGCCCTGAGGTTGACTTGAATGCTCCAGCAGTTGATGTAAAGGCTCCAAAAGGAAAGTTTAAATTTCCAACATTTAAAAACTTCCGTCTTTCTGgctcaaaaataaaatctcctGATGGCGACATTGCTGCTAACGTTGAAGGACCTGATCTAAAGATGTCTTCCCCCAAAGTTGAGACACCTAATGTTGATCTGAGCTTGCCCAAAGCTGAGGTTGATGTAGGCTCTCCAGATGCCAATGTTTCGGTCGATGCTCCAAAGGGTAAATTCAAATGGCCCTTCAGTCGGAAGTCGAAAGAGGGATTGAAGGGATCATTAGATCTTCCAGATGCCACAGTTGATGCTAAAGAGGCAGAAGTGACCCTTCCGTCAGGTGTACCAATGTTCAAGACGCACTTTCTGCCCAGCAGCAACCTGGAAAACCTCATCCAGGACATTGGTGGGGCGATTGATTTGAGCAGAGATCCAACTAAATCAGTGGCACAGGCTCTCCCTCAGCTGAAGGCGGAGGTGAAAGCGTCCCCTGGGTCTTCTGATGAGAATGGCCAGACACAGACAGTGAACATCTTGGAAAGACTAAAACTGTCTGCCGCACGCTCGATCAGTGACCTGACCGAAGGCAGCGAAGCCGAGACATCCTCAGTTCCAGACAGTCCGAGCAAAGCGAATAGAGGAACGTTTAAAATAAACTCCACAAGTGAGCAAGATAAAATTTCTCTGAGTCTTAACAACATGCTTGGCTTGCCAACTGGATCTGACGCAGGTGAAGATTAAGGTCAGGCTCAAAAGAAAACCTTCCTTTCTGAAAGAGGAAACGattcttaaactttttttttttttttttaacgtttgATGTCTTTCTATTAGCGCTGGTTTCTGAAAACAAGTCTAGATCCACTATAAAATGGACGTTTACTCTTCATGTGGAAGATCAGCTCTTTGTGTGACACTTTTATCACATTAGAGAGAAgacataaataaagtttaaaatggaGGGATGACATTTTGCAACATGTAATTCTGTAATTTTTTGTATAGAGTCTGTAAAACAAGCAAAGTCTTGGGTAATAATTTTACAAGATTATTAATATGAAGGAAATGTCTCATTCTGAATATCATAtacttctttatatatatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244578.3 True 4715 mRNA 0.44 5 12565112 12579232

Neighbor

gene id symbol gene type direction distance location
exo1 LOC107744706,LOC107081139 coding upstream 16022 12533857 ~ 12549090 (+)
jade1 jade1 coding upstream 226737 12315094 ~ 12338375 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding upstream 252174 12290397 ~ 12312938 (+)
LOC103024200 LOC108438733 coding upstream 303875 12188758 ~ 12261237 (+)
LOC111193190 NA coding upstream 390453 12154923 ~ 12174659 (+)
LOC103046040 NA coding downstream 162127 12741359 ~ 12748024 (+)
LOC103025054 slc16a12,LOC107669179,LOC107753457,LOC107758438 coding downstream 230435 12809667 ~ 12820803 (+)
LOC103047786 NA coding downstream 392199 12971431 ~ 12986601 (+)
LOC103021501 NA coding downstream 410499 12989731 ~ 13021102 (+)
morn2 morn2 coding downstream 476700 13055932 ~ 13062962 (+)
G80024 NA non-coding upstream 22463 12513002 ~ 12542649 (+)
G80028 NA non-coding upstream 33263 12528626 ~ 12531849 (+)
G80026 yipf4,LOC106576945 non-coding upstream 42012 12522704 ~ 12523100 (+)
G79924 NA non-coding upstream 281531 12281845 ~ 12283581 (+)
G79914 NA non-coding upstream 403332 12156315 ~ 12161780 (+)
G80031 NA non-coding downstream 2568 12581800 ~ 12667992 (+)
G80114 NA non-coding downstream 242726 12821958 ~ 12823957 (+)
G80138 pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 non-coding downstream 296541 12875773 ~ 12886581 (+)
G80166 LOC103025372 non-coding downstream 376084 12955316 ~ 12957340 (+)
G80176 NA non-coding downstream 408231 12987463 ~ 12987842 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 285606 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 488901 12064844 ~ 12076211 (+)
G79717 NA other upstream 659727 11901095 ~ 11905385 (+)
G79654 NA other upstream 1009973 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1750198 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1142669 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1346637 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1934178 14513410 ~ 14534923 (+)
G80648 NA other downstream 2146695 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 2151276 14730508 ~ 14798604 (+)

Expression


Co-expression Network