LOC103046040


Basic Information

Item Value
gene id LOC103046040
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12741359 ~ 12748024 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244580.3
GATCTCCTGGATCTCCTCGCTGTTGGAGGTTCTGGTGTAATGGCCGCTGTAGCGCTGGTGCAGGGGGCTAGCCGGGGGCTCGGGCTGGAGTTCTGCAGGCACCTCCTGCAGCACAGAGCTCCTGCCGCGGTGATCGCCACCTGCAGAGACCCGGACACAGCTCCAGCCCTAGCCGCGCTTTCCGGCGAGTACCCAGACCGGCTGGCGGTGATGAGAGTGGACATAACCCGGGAGGAGCAGGTCCGGAGCGCCGCTGAGCGGCTCAGCTCCACCTTCCCCAAACTAGACCTGCTGATCAACTGCGCGGCGGTTCTTCACCCGTCCGGCAGAGGAGAGACCAGTCTACGAGACGTGTCTGCTCAGGGGATCACTGCCACATTAGCCACCAACACGGTGGGCCCACTGTTGATGGCAAAGTACTTTTCCCCTTTACTGAAGAAGGGAACTGGAGCATTCGGTCAGCAGCCTGAAGATAAAGCAAAGCAACACTGCGGCGTCTTGGTGAACATGAGCGCCAGGGTTGGCTCAATAGGAGACAATGCTCTAGGAGGCTGGTACAGCTACAGGATGTCCAAAGCTGCTCTGAACATGGCCACCAGGAATCTGTCCATAGAACTGGGCCACAGTCATCCCAAAATAGTATGTGTGTCTCTGCACCCTGGAACAGTGAATACGGACCTCTCTCGCCCCTACCACAAGAATGTCCCCCAACACAAGCTGTTCAGCACACAGTATTCTGTGCAGTGCCTCATGGACATCATAGACAGCCTCAGTATGGATAAAAGCGGGAAGGCGTATGCCTGGGACGGCTCAGAGATTCCCTGGTAAAAGGGAATAGGAAGTTCTAGGTCATCATCTGGTGCTTACTCCAACAAATTGTGAAAGTTCGCACGGCACAGATGTAAATGATTTGGAAACActtaggaaagaaaaaaattaaaggtctGATTCCATAGtttcttcattcattttaatattgtggtctttagtatgaatgaatgccttgtgagctgttttttgtgatcTGGTGATCGGGTAtaacgttgttttattctggtggaggagtggtggGGGGAGAAACGATaagatttcggctcttgctaatgaatatttatacatgcagacATATTGTTTTacactgataacagtctggcaatgtcatatgttacttttcAACATGTGTGATACCCTGTTAGGTgaagttcagccactgaccttgtcttagagtctctgtaaaacgcaaaatccacaGGAGATGATATGTAAACCTATGTAAACACGGCCAAAATAAAAAGTCGCCAActgaatttaaagtaaatgatgtggggttgctgcagttggtcaggtctaggttcagcaacagtatgtgctgaaagaaagaggtcagctgactacctgaatatactgactatagaccaggttattccatcagtggattttttttttcttctctgatgacatggacatattccaagaggacaatgccaggattcatggggctgggaGCTCGTcgttttcacacatggattggccaccacagagtccacaccttaaccccattgagattCTTCTACTCTTAtcaatgcaagatcttggtgaaaaaataatgcaacactgaattgaaataaaatcgtgtgacattgcagaagcttattgaaacagtGCCACAGATTTTGAGCCCCTGAAATTAGGAGGATGTGAAGAAAATGGTTGCAATTCCTAAACgtatatttttgttcaaccccttgaattaaagctaaaagtctacagattattattttctcatttgcttaatttcaaatccagtgtggtgtaatgcagagcccaaatcatTAAGATTGCCGTCACTGTACAAACATTTTTGGGCCTATCTGTTAAAACTCTTGGAGTTGCGAATGTCATGTCATGTTGTCATGTTAACAGACTCTCAATTTCTGTATTCCACCATTTAACCAGTTTTCAGTGTGGGTTGTATCTATTcataacaaaacataaaactcaaAAACAACCTACAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244580.3 True 2015 mRNA 0.46 3 12741359 12748024

Neighbor

gene id symbol gene type direction distance location
LOC103045432 NA coding upstream 162127 12565112 ~ 12579232 (+)
exo1 LOC107744706,LOC107081139 coding upstream 192269 12533857 ~ 12549090 (+)
jade1 jade1 coding upstream 402984 12315094 ~ 12338375 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding upstream 428421 12290397 ~ 12312938 (+)
LOC103024200 LOC108438733 coding upstream 480122 12188758 ~ 12261237 (+)
LOC103025054 slc16a12,LOC107669179,LOC107753457,LOC107758438 coding downstream 61643 12809667 ~ 12820803 (+)
LOC103047786 NA coding downstream 223407 12971431 ~ 12986601 (+)
LOC103021501 NA coding downstream 241707 12989731 ~ 13021102 (+)
morn2 morn2 coding downstream 307908 13055932 ~ 13062962 (+)
arhgef33 arhgef33 coding downstream 317918 13065942 ~ 13084209 (+)
G80031 NA non-coding upstream 73367 12581800 ~ 12667992 (+)
G80024 NA non-coding upstream 198710 12513002 ~ 12542649 (+)
G80028 NA non-coding upstream 209510 12528626 ~ 12531849 (+)
G80026 yipf4,LOC106576945 non-coding upstream 218259 12522704 ~ 12523100 (+)
G79924 NA non-coding upstream 457778 12281845 ~ 12283581 (+)
G80114 NA non-coding downstream 73934 12821958 ~ 12823957 (+)
G80138 pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 non-coding downstream 127749 12875773 ~ 12886581 (+)
G80166 LOC103025372 non-coding downstream 207292 12955316 ~ 12957340 (+)
G80176 NA non-coding downstream 239439 12987463 ~ 12987842 (+)
G80186 NA non-coding downstream 301771 13049795 ~ 13051000 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 461853 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 665148 12064844 ~ 12076211 (+)
G79717 NA other upstream 835974 11901095 ~ 11905385 (+)
G79654 NA other upstream 1186220 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1926445 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 973877 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1177845 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1765386 14513410 ~ 14534923 (+)
G80648 NA other downstream 1977903 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 1982484 14730508 ~ 14798604 (+)

Expression


Co-expression Network