LOC103047786


Basic Information

Item Value
gene id LOC103047786
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12971431 ~ 12986601 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244586.3
ATGTTTAACTACAGGGAGGACATGGACGGTCGCCTCGTGGATAAAGGTAGAGAAGACCACCGGAATCTGGCCCAAAGACTGGCCAAGACATTTCCCACCCTCCTGACCAAGAACAACCTTCTAGAAAAGAAGGTCAGCTTCAGCACCAGCTCCAAACACAGGTGTGTGAACAGCACCCTGGCTTTCCAGCAAGGCCTGAAGAAGCATTTTAGTATCGAAGAGGATGACTTACAGGATAATTACACAGTAAAAGATGAGCTGATGCGCTTTTTTGACACATGCCGTCGCCTGTTGGAGACGGTGGAGAAGAATAAGAAGGCAGTGGAAGAGGTCACCAACTTTAACGAGGGTCCAGAGATGAAGAGAGTTCAGGAGAAACTGGCTGACCGGCTTCAAGTCCCATACGCCAATATTACAGTGGacTCCGTGGAGGCAGCATTCTACCTGTGTTCATATGAGTTTACAATCCTTGGACTGAACTCCCCCTGGTGCAGACTGTTTGATGAAAAGGATGCTGAGGTGGTAGAGTACTCTGGTGACCTGAAGCAGTACTGGAAGAAAGGATTTGGCCACGACATCAACAGCAAATCCAGCTGCATTCTCTTCCATGACCTGTTCAACCGCTTAGAGACGGCAGCCAATAAACACAAgtctgGTGTGTCCGTGTCTGAGGTGGTCGCCGTGCAGGTCGGCCACGCTGAGACGCTGCTGCCCCTCCTGACCCTCCTGGGCCTTTTTAAAGATAATGCCAGCCTGACCTCCACCAACTTCGACGAACACCTGAACCGCGCTTTCCGCTGCAGCAGGAACATGCCCTACGCTGCCAACCTGCTGGTGGCGCTGTGGGACTGTTCCGATGGCCTTAGGCTGCAGTTCCGGGTGAATGAGAAACCAGTGACCCTGCCGGGCCTCGATAACTCCTCTCCTCTGTATCAGGAGGTCAGAGAACAGTACAAGCAGCTGCTGCAGGGCTGCAACCAAGAAACCGTCTGCCAGATGAACTCCTGAACTGAGATAAACACggactacactgaaaaaatgtggTGCAGTGAATTTACCTGATTTGGGTTTGTTCATTATGTGCACATGAACACATGCAAAAACATGATcagataatttattaaatgttttaatacaatGTGAATTTGACACCTCTGCACATTCTAAAgtataataattgttttaaaaataatttaactaaaCTGGTGTGTGCAAAAGTAATGCCAcctctatatatatttctacttctaaattcagaaattaaagaaataaagtgtATGAATATACAAA

Function

GO:

id name namespace
GO:0016791 phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244586.3 True 1290 mRNA 0.47 6 12971431 12986601

Neighbor

gene id symbol gene type direction distance location
LOC103025054 slc16a12,LOC107669179,LOC107753457,LOC107758438 coding upstream 150628 12809667 ~ 12820803 (+)
LOC103046040 NA coding upstream 223407 12741359 ~ 12748024 (+)
LOC103045432 NA coding upstream 392199 12565112 ~ 12579232 (+)
exo1 LOC107744706,LOC107081139 coding upstream 422341 12533857 ~ 12549090 (+)
jade1 jade1 coding upstream 633056 12315094 ~ 12338375 (+)
LOC103021501 NA coding downstream 3130 12989731 ~ 13021102 (+)
morn2 morn2 coding downstream 69331 13055932 ~ 13062962 (+)
arhgef33 arhgef33 coding downstream 79341 13065942 ~ 13084209 (+)
ecd NA coding downstream 164648 13151249 ~ 13163591 (+)
LOC103026899 p4ha1b,LOC108433345,LOC107671120,LOC108270445,LOC107668593,LOC107553883,LOC107750858 coding downstream 220847 13207448 ~ 13233703 (+)
G80166 LOC103025372 non-coding upstream 14091 12955316 ~ 12957340 (+)
G80138 pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 non-coding upstream 84850 12875773 ~ 12886581 (+)
G80114 NA non-coding upstream 147474 12821958 ~ 12823957 (+)
G80031 NA non-coding upstream 303439 12581800 ~ 12667992 (+)
G80024 NA non-coding upstream 428782 12513002 ~ 12542649 (+)
G80176 NA non-coding downstream 862 12987463 ~ 12987842 (+)
G80186 NA non-coding downstream 63194 13049795 ~ 13051000 (+)
G80189 NA non-coding downstream 104344 13090945 ~ 13094064 (+)
G80197 map4k3,map4k3a non-coding downstream 135761 13122362 ~ 13124594 (+)
G80202 NA non-coding downstream 156484 13143085 ~ 13143493 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 691925 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 895220 12064844 ~ 12076211 (+)
G79717 NA other upstream 1066046 11901095 ~ 11905385 (+)
G79654 NA other upstream 1416292 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 2156517 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 735300 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 939268 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1526809 14513410 ~ 14534923 (+)
G80648 NA other downstream 1739326 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 1743907 14730508 ~ 14798604 (+)

Expression


Co-expression Network