LOC103024106 (actn2b,LOC103024106,LOC108433346,LOC108270464,LOC107552853,LOC107668621,LOC107084685)


Basic Information

Item Value
gene id LOC103024106
gene name actn2b,LOC103024106,LOC108433346,LOC108270464,LOC107552853,LOC107668621,LOC107084685
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13237205 ~ 13268832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244596.3
GACGGCGCGCGGTTCTCGCGGTGCGgtttcagcagcagagagagagagcgcgcgcacgagagaaatagaaacagagagatagagagagataaagaagggATTTATAGACTCAGTGAGATCAAGGGAGCTGAAGGTCTGGAAGCTCAGATTCCCTCAGAGCAGCTAAAGAACCTGCAGAACCTACAGATACAGAAGAAGAAGCTCCTGAGATGACTCAGATAGAGAACATGGTGCAGTATGATAACGGCtacactgaggaggaggaggactatATGATGCAGGAGGAAGAGTGGGACAGGGACCTGCTGCTGGATCCAGCCTGGGAGAAACAGCAGCGCAAGACATTTACTGCGTGGTGCAACTCTCATCTCCGAAAGGCTGGCACTCAGATTGAGAACATCGAGGAGGACTTCAGAAATGGCCTCAAGCTCATGCTACTGCTTGAGGTCATCTCAGGAGAGAGGTTACCCAAGCCTGACCGAGGCAAGATGCGATTTCACAAGATTGCCAACGTCAACAAAGCTCTCGAATTCATCACCAGCAAAGGAGTCAAGCTTGTTTCAATCGGAGCTGAAGAAATTGTGGATGGCAATGTTAAGATGACCCTCGGAATGATCTGGACCATCATTCTCCGATTTGCCATTCAGGACATCTCTGTGGAAGAAACCTCGGCTAAAGAAGGTCTGCTGTTGTGGTGCCAGAGAAAGACCGCCCCCTACAGGAACGTCAATGTACAGAACTTCCATGTCAGCTGGAAGGATGGCCTAGCATTCTGCGCGCTCATACACAGGCACAGGCCTGACCTCATCGACTACGCCAAGCTCAACAAGGATGATGCTCTGGGTAATCTAAATCTGGCATTTGAAATTGCTGAGAAGCATCTCGACATCCCTAAAATGCTGGATGCTGAAGACATTGTGAACACCCCCAAACCTGATGAAAGAGCCATCATGACCTATGTGTCCTGCTTTTATCATGCTTTTGCTGGAGCAGAGCAGGCTGAAACAGCTGCTAATAGGATCTGTAAAGTGTTGGGGGTGAATCAGGAGAATGAGAAACTTATGGAAGAGTATGAGAGACTGGccagtgagCTGTTGGAGTGGATCAGACGCACCACGCCGTGGCTGGAGAACCGCATGTCGGAGAAGACCATGACGCAGATGCAGCAAAAGCTGGAGGACTTTCGTGATTACCGCCGCCTACACAAGCCTCCTAAAGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACCCTGCAGACCAAACTGCGCATCAGCAACAGACCTGCGTTCATGCCCTCCGAGGGCAAGATGGTGTCGgaTATAGCGAGTGCATGGCAGGGTTTGGAGCAGGCAGAAAAGGGTTATGAGGAGTGGCTGCTCACTGAGATCCGAAGGCTTCAGAGACTCGACCACCTGGCTGAGAAGTTCCGTCAGAAAGCCACCAGCCATGAAACCTGGGCCACAGGTAAAGAAGAGATTTTGACTCAGAAGGACTACGAGTCTGCATCACTTATGGAAGTTCGAGCAATGCTGCGGAAACACGAGGCGTTCGAGAGTGACCTGTCAGCTCATCAGGACAGAGTAGAGCAAATCGCTGCCATCGCACAGGAACTCAATGAGTTGGACTACCATGATGTGGCTTCAGTGAACCAGAGGTGCCAAAGTATCTGTGATGTGTGGGACCACCTAGGCACCCTGACCCAGAAACGCAGAGAGGCTCTGGAGAGAACAGAGAAGCTGCTGGAGACGGTGGAGCAGCTGTTCCTTGAGTACGCTAAAAGATCAGCTCCCTTTAACAGCTGGCTGGATGGAGCCATGGAGGATCTGCAGGACATGTTCATAGTACACACCATCGAGGAAGTCCagAGTCTAATGGCAGCTCATGAGCAGTTTAAGGCCACTCTGCCGGAGGCGGATGCAGAGAGACAGGCCATACTTGGCATCCAGCAGGAGGTGCAGAAGATCTTCCACAGTTACGGGATCCGCGGCGACCTCACCAATCCATACAGCACCATCAGCCCTGAGACGATCCTCAGCAAGTGGGATAAGGTGAAGAAGCTGGTTCCTCAGAGAGACGGTGCTCTGCAGGAGGAGCTGGCGCAGCAGCATGGAAACGAGAGGCTCCGCCGGCAGTTTGCTGCTCAGGCCAACCTCATCGGACCCTGGATCCAGACCAGGATGGAGGAGATTGGTCGCTGCTCTCTGGAGATCGGCGGAACTCTGGAGGATCAGATGACTCAGCTGAAGCAGTACGAGCATGTGATCGTCAGCTACAAACCCAACATCGACAAACTAGAGGGAGACCACCAGCTGATCCAGGAGTCCCTTATATTCGACAACAAGCATACCAATTACACAATGGAgCATATCCGTGTGGGTTGGGAGCTGCTCCTAACGACGATCGCTCGCACCATCAATGACATCGAGACTCAGATTCTGACCCGCGACGCTAAAGGCATCAGCCCTGAGCAGATGAAGGAGTTCCGCTCCTCGTTCAACCACTTCGACCGGAAAAAGAACGGGGCAATGGAAACGGACGACTTCAGGGCCTGTCTGATTTCTATGGGCTACGACCTGggTGAAGTGGAGTTTGCTCGGATCATGATGCTAGTTGACCCGAATGCGTGCGGAGTGGTGACCTTCCAGTCGTTCATCGACTTCATGACCAGAGAGACGGCAGACACGGACACGGCCGAGCAGGTCGTTGCTTCCTTCAGGATCCTCGCTGCAGACAAGCCGTACATCCTGATCGATGAGCTGAGGAGAGAGCTGCCCCGTGACCAGGCCGAGTACTGCATCTCCAGGATGCCACCTTATGCTGGCCCTGGGGCCATGCCCGGAGCCCTGGATTATACAGCCTTCTCCACAGCCCTGTATGGAGAGAGTGACCTTTAAACTGCACGCTGCCTGAGCTTCACCCATGACTTTTAAAATATGATCCAAAGTCCCTGTGAGAACGGTCCCACTTTCCaaagaattaaaataatgagaaacaTTATAATGTGGAGCTGAACTGCAGAGTGTGACGTTTCTTTTTCAAGTGTTGcataaaattggataaaatgttaatttgggGAATGTGTGCCTTTATAGAAACCAAATCTATTCATATTGAAAACATTCACTGTGCTTTCAATTAATACTTAGTTATCAATGAATTGTGTTCAGTTTATGTACTGTGTTGCTCCAATTCTACACTAATTGTATCACTTCAGTTCTGCAGCTTTGATTAGATTTAGATTAACTATGAAACCAGACTGTCACAGAGATTCCAGGGaaagggtgtgtttgtgtgtagatgttttttttatgcttggaAAACATTTTTCTCCCAACACAgattcattattaatattatcagtccaaaaacaaactgattattatttttctcctgaaatgtaataaaattatgCAGTGTTATATAATATTGATATAACGCAATCACACTCATTATTAATTATAGAATATAACAAACTATTATTAATGAACAGTCTGTTTGCTGTAAGAATTTAGTAAAAGGCTATTTACGCAGATATGCAGCTGTTAGCTTCACTGAGGTGCATTGTGGTGTAGATGGAGAGAGTTTACAGCTGGACACCATTTGTCagtgtgaaataaaatattaaagactataatCTGGTGGATTTTCATACAgatttcagtttgtgtttaacctatatttttattacacgAATAGGCCTACATAATGATTTTATTACGATTTAATTGCTCAATTCCAATGTCTGATTCCAGTGAAATTCCATTAAAAAGTGTCATTTCATTAAACTAGTGTGAAATTCtattacaaaatccagtgtaattTCATTGACATATCAGCAAATTGCCTCAAATTATGTA

Function

symbol description
actn2b Predicted to enable actin binding activity and calcium ion binding activity. Acts upstream of or within animal organ development and muscle cell development. Is expressed in several structures, including brain; cardiovascular system; eye; muscle; and ovary. Human ortholog(s) of this gene implicated in arrhythmogenic right ventricular cardiomyopathy and dilated cardiomyopathy 1AA. Orthologous to human ACTN2 (actinin alpha 2).

NR:

description
alpha-actinin-2

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007507 heart development biological_process
GO:0045214 sarcomere organization biological_process
GO:0001654 eye development biological_process
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K21073 ACTN2_3; actinin alpha 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244596.3 True 3863 mRNA 0.48 21 13237205 13268832

Neighbor

gene id symbol gene type direction distance location
LOC103026899 p4ha1b,LOC108433345,LOC107671120,LOC108270445,LOC107668593,LOC107553883,LOC107750858 coding upstream 3502 13207448 ~ 13233703 (+)
ecd NA coding upstream 73614 13151249 ~ 13163591 (+)
arhgef33 arhgef33 coding upstream 152996 13065942 ~ 13084209 (+)
morn2 morn2 coding upstream 174243 13055932 ~ 13062962 (+)
LOC103021501 NA coding upstream 216103 12989731 ~ 13021102 (+)
LOC103027186 LOC108433299 coding downstream 5756 13274588 ~ 13397644 (+)
LOC103026792 LOC108431631,LOC108270417,LOC107668606,LOC107750856,LOC107717089,LOC107579247 coding downstream 215734 13484566 ~ 13719618 (+)
zmpste24 zmpste24,LOC107654896,LOC107583569,LOC107715979,LOC107670834,LOC107583239 coding downstream 821624 14090456 ~ 14102426 (+)
LOC103025466 LOC103025466,LOC107715944,LOC107654832,LOC107577051,LOC107736670,LOC101076253 coding downstream 838787 14107619 ~ 14110827 (+)
rpl13a rpl13a,LOC106610677,LOC107654893 coding downstream 845234 14114066 ~ 14117650 (+)
G80205 NA non-coding upstream 90066 13146257 ~ 13147139 (+)
G80202 NA non-coding upstream 93712 13143085 ~ 13143493 (+)
G80197 map4k3,map4k3a non-coding upstream 112611 13122362 ~ 13124594 (+)
G80189 NA non-coding upstream 143141 13090945 ~ 13094064 (+)
G80186 NA non-coding upstream 186205 13049795 ~ 13051000 (+)
G80227 NA non-coding downstream 3974 13272806 ~ 13273059 (+)
G80319 NA non-coding downstream 97740 13366572 ~ 13367091 (+)
G80359 NA non-coding downstream 194543 13463375 ~ 13490214 (+)
G80386 NA non-coding downstream 392568 13661400 ~ 13661795 (+)
G80388 NA non-coding downstream 418193 13687025 ~ 13737100 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 957699 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 1160994 12064844 ~ 12076211 (+)
G79717 NA other upstream 1331820 11901095 ~ 11905385 (+)
G79654 NA other upstream 1682066 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 2422291 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 453069 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 657037 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1244578 14513410 ~ 14534923 (+)
G80648 NA other downstream 1457095 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 1461676 14730508 ~ 14798604 (+)

Expression


Co-expression Network