htr1d (htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484)


Basic Information

Item Value
gene id htr1d
gene name htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14289248 ~ 14361236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244597.3
gcgagtgatagaaggagagagagcgcgcgcACGGGGCGCTGGAAGCTCCTCTCGCGCTCCGCTGAACAGTTGCAGCAGCGCGTGCCGGGGAGTTGCGCGCTCCCCTCTCTTTTCCTGTTCTCTCAGTATAAAGTGAAGcctgtttcagtgtttctggCGCGCGCTCTCAGACCTGTAGCACTTTTATCTGTTTTGACGGTGGTTATGGTGTTTCCGCGAGACTCTGTGGGATGTTTATGTGAAATGGACTAGATAAAGCAGCTGATCTCAGACTGCAGGGGGAGGAAACTTCCCGCGCTGCTCTGATGGACTGCAGGAGTGAAGAGGGCTGGAGATCTGCTCCACCTGCTGAGATCTTCACCGCGATATGGATTTCATCCAGGCTTCCTGCAAGCTAAGCCCTATCCTGCTCTGGCCAAGCGTGCCGTTTGGCGCCTTCCATCAGGATTAGCCGCCGCCCGGCAACTTGCACGCGTGTGGCGAACACCGCAGATCAGTCCTGATGCCAGCTTACGTCTTCTTCTCCACCTGGGAGGCTTCGCCTGTGGTGAATCTTAAACAGAGCGAGGAAAAAGCAATTGTCTTCAACTTGAAACAGCGGTGGGGGCATGCGGCGACTCTTTGAGCTTTTAATCTGAACAACCGCTGAAGGACTGTTTGTTCTTTGTGTACACAAAGTGTGCTGTCAACCCAGACAAAAGACTGGCAAAGGCACTCTAGGACTAGGGTAATATcaccacaaaaataaacaagagtGGCATAAGAGTGGCTTAACCTCTAGTTGAAATGTTTGAAATGTTTGGAATGCCATAAACTCTTCTCTGACTGCACTGATTATCAGGGATATCCAAAGGGTCTCAAACTCTAAGAAGATCAAACTCTATAAGAATCTCCTACACAAGATTCATGGGAAGCTAACATTGGACTTTAGACATTCATCTTTAGAACTTAAATCCCAGTTGTTTGACATTTGTTCGAGTTAAACAAAAAGGGTTAGTGGAAATGGGCAGAAAGACTTTGTTTGACAAGAAAAGCACAGAAAAGCTACGTATTAACCCATCACCCAAAGAACTCTGGGTCAATTGAGGGTACTACCACAGTGTAGCGTGGCAATGAGCAGCTTCATCGCAGTAATGGATCAATACAACAGCTCTGCCGAGTTCACGTTCCTACGCAACATCACAGGAGATTCAGAGGACTCCGAGGCCTGGGATGAAGCAACCCTCCTAGGCCTCCAGATCTCCCTCTCGGCCCTTCTGGCTGTCGTAACCCTGGCCACCATGCTGTCTAACGCCTTCGTTATCGCCACCATCTTCCTGACGCGGAAACTGCACACCCCCGCCAACTTCCTGATAGGCTCCTTGGCTCTGACGGACCTGCTGGTGTCCATCCTGGTCATGCCCATTAGTATCGTCTACACAGTAAGCAAGACGTGGACCCTAGGTCAGATCATGTGCGACATTTGGCTGTCCTCGGACATCACCTTCTGCACAGCGTCCATCCTGCACCTGTGTGTGATCGCGCTGGACCGCTACTGGGCGATCACAGACGCGCTAGAGTACTCCAAGAGGCGGACAACGCGGCGGGCAGCACTGATGATCGGGGTGGTGTGGGTCATCTCCATCTCAATCTCCATTCCGCCACTATTCTGGAGGCAAGCCAAGGCTCACGAGGAGCTGACTGAGTGTCTAGTCAACACGGACCAGATCTCTTACACGCTTTACTCAACTTTCGGAGCATTCTACGTGCCCACCATTCTTCTCGTCATCCTCTATGGGCGCATCTACGTGGCCGCCCGCTCTAGGATCTTCAAGACTCCAGCGTCCTGTGGAAAGCGCTTCACAACGGCACAGTTGATCCAGACATCAGCTGGCTCATCCCTCTGCTCCCTCAACTCCACATCCAATCAGGAAGGGCATCTTCACCCTGGAGGATCGGGAGGTGGAGGAGGGTCTCCACTCTTCATGAACAGTGTGAAGGTGAAGCTGGCAGACAGCGTACTGGAGCGGAAACGATTGTGCGCCGCAAGGGAAAAGAAAGCCACAAAGACCCTTGGCATCATCCTGGGGGCTTTTATCGTCTGCTGGCTACCCTTCTTCGTGGTAACTCTGGTCATGGCCATCTGCAAGGACTGCTGGTTCCATCCGGTCCTCTTCGACTTCTTCACCTGGCTCGGCTATCTCAACTCACTCATCAACCCCGTTATCTACACTGCCTTCAACGACGAGTTCAAGCAGGCCTTCCAAAAACTCATCAAGTTCAAGAAGTGCTACTGAAGGAACCTTGCAAAAACAAGCATTGAACTTCTGGCCTGTTAAGGTGGATACTCTAACAGTCCCAATCTGAACTCAAAACCAATGATGTTTGGGATGTAGGACACCATGAAGGATCTTGAACCTTTACTGTGGCATTCGTGTTAGTGTCTTTGAAAATACAAAACCATGGTTATATGTGTTTGGTCACAGTACATATTTGTACAGTTGAAATCCCATGAAACAGcttgtgaaaagaaaaaaaaaaccttctgcCAAACTGTTGATGTTACCCCAGTAGATTTATGTATGCATGCATAGTGAGGGCTTCTCCCTTAGGAAACATTTGTTCTGTGTCTACAAGCAATTACAGAGACTGTTCCAAAAAAGAAGTAGAAACAGGACTATAAGCTGGAAGGCTGGTGAACTGGAACTGTAGTAATGCAATTGGAACAGTTTGAAACGGTTTGAAAGAAAATGCAatgttttctcaaaaaaaaaaaggatctatACCCTGTATATGGAATTACAAAGacaaaatgtgtatatatatataaagagttcATTTTTCAAAGAATATGAAATACATAtcatttacttttg

Function

symbol description
htr1d Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; smooth muscle contraction; and vasoconstriction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in brain. Orthologous to human HTR1D (5-hydroxytryptamine receptor 1D).

NR:

description
5-hydroxytryptamine receptor 1D-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006939 smooth muscle contraction biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0040012 regulation of locomotion biological_process
GO:0042310 vasoconstriction biological_process
GO:0050795 regulation of behavior biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244597.3 True 2855 mRNA 0.49 2 14289248 14361236

Neighbor

gene id symbol gene type direction distance location
rpl13a rpl13a,LOC106610677,LOC107654893 coding upstream 171598 14114066 ~ 14117650 (+)
LOC103025466 LOC103025466,LOC107715944,LOC107654832,LOC107577051,LOC107736670,LOC101076253 coding upstream 178421 14107619 ~ 14110827 (+)
zmpste24 zmpste24,LOC107654896,LOC107583569,LOC107715979,LOC107670834,LOC107583239 coding upstream 186822 14090456 ~ 14102426 (+)
LOC103026792 LOC108431631,LOC108270417,LOC107668606,LOC107750856,LOC107717089,LOC107579247 coding upstream 569630 13484566 ~ 13719618 (+)
LOC103027186 LOC108433299 coding upstream 891604 13274588 ~ 13397644 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding downstream 89885 14451121 ~ 14478899 (+)
LOC103027375 LOC108431653 coding downstream 134022 14495258 ~ 14511030 (+)
entpd6 entpd6 coding downstream 334357 14695593 ~ 14722677 (+)
LOC111193201 NA coding downstream 402334 14763570 ~ 14766023 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding downstream 475246 14836482 ~ 14879706 (+)
G80500 NA non-coding upstream 225652 14057421 ~ 14063596 (+)
G80494 NA non-coding upstream 242303 14045379 ~ 14046945 (+)
G80388 NA non-coding upstream 552148 13687025 ~ 13737100 (+)
G80386 NA non-coding upstream 627453 13661400 ~ 13661795 (+)
G80359 NA non-coding upstream 799034 13463375 ~ 13490214 (+)
G80578 NA non-coding downstream 212346 14573582 ~ 14574902 (+)
G80580 NA non-coding downstream 216088 14577324 ~ 14579064 (+)
G80588 bicc1,LOC108431656 non-coding downstream 231863 14593099 ~ 14607530 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding downstream 278881 14640117 ~ 14646367 (+)
G80662 NA non-coding downstream 460519 14821755 ~ 14822248 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other upstream 337050 13925869 ~ 13952198 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other upstream 482221 13721901 ~ 13807027 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 2009742 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 2213037 12064844 ~ 12076211 (+)
G79717 NA other upstream 2383863 11901095 ~ 11905385 (+)
LOC103028846 LOC108431654 other downstream 152174 14513410 ~ 14534923 (+)
G80648 NA other downstream 364691 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 369272 14730508 ~ 14798604 (+)
LOC111193140 NA other downstream 427366 14788602 ~ 14803032 (+)
LOC111188193 LOC108431664 other downstream 445079 14806315 ~ 14835079 (+)

Expression


Co-expression Network