LOC103032735 (LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900)


Basic Information

Item Value
gene id LOC103032735
gene name LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14836482 ~ 14879706 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244626.3
GTGCCGCCTGTAAAGCGCACATCTCCCGGCCGGGCTGAGCGCACAGGCCACCTGCTCCCTCCGGAGAGCGAGCGGAGGGATTCTCGACACTGCGCGTCTTTATATCTGTATTTCTGTACGCAGAGGCCTTTACTCCGCAGatgatgaaggCTGATCTGGAGGCTCCTCTCTCTACTGGGAGCTGTAATGCTGCTATTCAGTGCAGGGACGTGTGCCGCTCGTACGGGAAACTGAAGGTGCTCAGCAGCCTCAACCTCACTGTACCACAGGGCCAAATTTACGGGTTGCTCGGCCCGAGCGGCTGTGGGAAAACAACGCTGCTAAAGTGCATTGTAGGAACTCTGAAGATTTCCCGAGGGTACATCAGTGTTCTGGGAAAACCGCCGGCATTCCCTGGACATGAGGTGCCGGGAAGGATGGTGGGATACATGCCACAGGACATCGCCCTGTATAATGAATTCACCATCAGCAACACGCTGTGGTTCTTCGGCCGAATCCACGGCCTCTCCTCCAAAGAAACAGAGGACAGGATGAACTTCCTCATCGACTTCCTGGACCTGCCGCAGAAGAACAGCCTGGTCAGAAACCTgagCGGAGGTCAGCGGAGGCGCGTCTCACTCGGTGCTGCTCTTCTACAGAACCCTCAGCTCCTCATCCTCGATGAACCCACTGTAGGAGTGGATCCTGTTCTCCGGGCCAAgatatGGCAGCACTTGGTGGAGATTGTAAGAGGTGGACAGGTGTCCGTCATCATCACCACACATTACATAGAGGAAGCCAGACAAGCCAACGTGGTGGGGCTAATGAGGAACGGGAGGCTGCTAGCCGAAGCCAAACCAGAGGCGGTTATGAAACAGCACAATGCAGCAACCCTGGAGAGCGCGTTTCTACAGCTTTGTGAGGACTTCGACCAAGTGGGGTCTAAAGAGAGCCCTCAGGTACCTGCACACACTAACAGCCCATCTCCGGACAGCCTGAGGGACGAGAGCAGAGAGCTCCTGGCCAAGAACCTTCCTGCTGCAACTGATATCTCCAAACCAAAAGCGGACTGGAAGGTTAAAGCACGGCATGTCATTCCGAAATGGCGAAACATCGCTGCGTTGATCATTAAAACGATAGTACGGATGAGAAGAAATCCTGGcTCCCTGTGCTTCCAGTTCCTGTTGCCAGTGATTCAGATCTGTctgatgtgtctgtgtatcgGAGCTGACCCCAAGGGGATCGAGGTGGCCGTGGTCAATAATGAAACAAGCTCCAGCGCCTACAGCCGTTCTCTGCTGTCCTTCATTGACAACACCAGCATCATCCAGGTGAACCTCTCGCATTCCGAAGCTTTTGATGGGATCCGTAACGGAGAGTACTGGGGGGTCGTTGAGTTCGGCCAGAACTTCACCAGCTACCTAACCAAGAGAATGTTGCAGCCCAGGGTGTCAAAAGAAGTGGTTGAAGGAGGATCGGTCCACGTCTGGCTGGACCTGACGAATCGACAAATAGCAGTAATGCTACAGAAGAAACTCCATGAAGCGTTTCAGgCGTTTGTTGACAGTAAGATGGGTAGTCTGGCCTACCTCGTCGCTCTCCCTGTTAAGTTTGAGGAGCCCATTTACGGCAGTCAGAATGCAGATTTCAGTACGTTTGTGACCCCAGGGGCAGTCCTGAGTATCACCTTTTACCTGGCGGTGGGGCTAACTGCTCTGTCCTTCGTGTTGGAAAGGAAGGAGGGGCTGTTGGACAGGTGTTGGGTGGCAGGGGTCAGTTCTCTGGAGACCATGCTGGCCCACCTCTTCTCTCAACTGCTGGTCATCAGTGTTCAGATCATTCTGCTGCTACTCTTCATCCTGCTCGTCTTTAagaTTCCTAATGAAGGCTCTCTGGCTCTGGTGATCACACTGATCGTCCTGCAGGGTGTGACGGGCATATCCTTTGGCTTGGTCATCTCCGCAGCCATTGACGACGAGCAATCAGCCAATCAAGCAGCACTGGGCATCTTCTACCCAAACCTCATCATCAGTGgagTTATCTGGCCAGTGGAGTGTATTCCGTATCCTCTGCGTTATGTGAGTCTGGTTCTGCCCCAGACCTACGCCTCTGAAGCCCTGCGCTGCATTATGTACCGAGGTTGGGGTCTCTCTCGGATGATGGTGTGGCGTGGCTTTGCCGTGACCCTCGGCTGGAACACGTTCTTCCTCATCCTGGCCACCATCATCCTCAAGCTGAGAACGTGAGAAGGGCTGCCGTCGGGGAATACGCTTCAGGTCAGAGCGAGTGGCGCCTGGGTTCATGCCAGGCCTCTCTCTAGCTGAATGGAGGCTGACTGGACATCGCATAATCCTGCTAAGTGGATAAACAACTCCTGGGGCTACCAATCAGATTGCTCATCTTCCTTGTACACAGACAGCCACGTCAGAGTAGCCAGTCAGGTTCTGCTTTTCCACGAGGACCAGAGCCAAGAACCTCAGGGAATCCCTCCCTTCTCTGTCCAATCATCAGCATTCCACCGTGGAAGGAGAGTCATACTTTTGTGCATTCATCGATCTGAGGATCTGAGGGACAGATGGGCGAAATCAACCACATAACACAAAGATGTGGTGACcctctttaggagttactgggAGCTTAAGGGGTCACTGGGAGCTGCTCTCACGTATCACCTAATCTTCCATACTCCCAGTCATGGATCCATCTGTTTGCACATTCCCTTAGAACCTCTTGGCTATCACTTTTTTTGACCCATCTGTCTGCACGCTTTGGGCCTTTTTTAATCTGTCATGTGAATGTAGAGCTTTTTGTTGTAATACTTTTCAAGCTCCCTCTCTTGGGCTTTGTTTGTGTGTCCATTTCTCGAGCAATGTGTGCCTGTTGACCCCACAGTAAAGGGGATTAGCCATTAATGCTTGCACCTTTATCTTGTGTCTGATTAGTTACCGCAATAGCAAGTTATCTAATTGTCTAAAGTTTTAGTGTGATACTTTTtactatgtatttttatttgcgattttttgttgttgttgcctTTTCCTGCACCCCCTTATGCTGGACAGAGGGGGGCGCTGTTTTGCCAATAGCCAGAAAGCCTGTTGAAATGAGGGCGCGCATTCAGTCTGCCCTGACATGATTTGTGCAAAGTgatctcactctttttcttacTACCAAGAGGATCTCATGTACCAAGGACCATAAACTGAAGAAATAtctgtgtttatgtatgtttacaCTGTTCATGTACAGCAGGCCTGGGCCAACCCTGCAGTCCCTGTGctttgttttgcattttggaATACGTGAAGCGTGTATGCTGTTATGCTGCACAGAAATGCAAAGACATAATGCATGTATACAGAATGCAGTACCTGCCAAATTGGCCTGGGAGTACAGAGAAAGTCAGCATTGAGAGATTGTGGTCATCAGCACAATTAGAACTGTATTGCAgaagatgagtgtgtgtttgtgtgtgtgtgtgtagtgcccGATTGATGTAATGTTctgattaatatatattatagagatGGACGATTAATGTTTATGGAATCAACACAGATTGTGAAAACCTTTTAGCACCAAACTTGGTAATGCATCATCGTGCAGGGCTTCTGTAATGTTCTGCATAATTACTGAAAAGGAAATGtactttacttttctttttaaatcatcAATCATATTAAAAATGCTGTGAAACTCCTAGCACCAGCTAAAATAGCCCACTGTGTAGCTCAGTGTGgaaacacaataacacaaaaaaaaacatcttttctAGTGCTAAAACTCCATCTCTTTGGACATGATTCCTTTAGCTTTCAATCTGTTGCTGCTGTAGATTTTTGGTGGTGGATTAATATAATTTGctctattttctgttctatgTGGTTAGTGGTGCTTGTTAGCTCGGCTATGTTCTGATACAGCACACATAGTGTAGTTCATAGCTGGCTTTTATGAACATCTGCAGTCGTGCACAAGCTCATTTGTTCTATCTAGCGGTAGATAGAactaatgtatatattattataaaactgtGCAGGAATCTAGCAGCATTACAGGACTTGAATTGCCTGCCcctgttttatacttttattttatattccagTACTTTTATTCAGTTCTCTATTGTCAAACAGCAgaaacttctaaaaaaaaacaccatattaaTAAGAACATTTTGACAGTAGTGGACAGAGTTACtcatcattcttttttttctgtttattttctgtttattatatgttctttttattttctgttattcTGCTACACTTGGACTGTCACCAAGCTATCCAACTTTCAATAAGTACCTTAAATAATTGGTACAATATGAGGAAATCAGTTGGGCACTAATATGCACACTCTCACTGTCATATCAGAACCTcataccgttttttttttattgtgtttaaacatttttgacCTTTACAAATCTGCTATTTTGGGAATATAAGTTTTGTtatgacagtgatgatatattaAATCATGTTATGTTAAAGGTTATTGGTAGCTATAATGACTGTGAAAATCAGTGTTAATTGCTATGAAGGAATTCtaagaactatatatatatttttttctcttatttgaGAATATTAATTTAGAACTAGTGACAGGAATAGGTCCAAGTAAATGGTACTTTtagaattaatttaaaaaaggttaattATTGTCTCCCTCATATGGACCCTATAAAGactaaaatgaaactaaaatgAGTGAATTTTCTGAATATCATATTTAAGTACAAGTATTACAATTTCATAAGCACAAATCCATAACAATACAGTTAAGTACTCGTCACTATATGGCAACTGTATTCCTTGTCAAAATAATCGTGATAATATAATTTTGCTTATGAAAAATGTCATTCATTTGTTGAAATAATCAAAACTGAGTCCCATGTTAGTTGGGGTTTGTGACTGATGATAATTCAGACACTGTTGTGTTGAATATGGGGATCACTGTACTGTATGTCACACACCATAATTCATTCACTGCTCCTAGAAATCAGCTCTCCAAACTGGCTGATCCCAACATGCCACGTCTTCTCTCCAGGAAATGATCTTCAACCATCATAAATGTGTCTTTCTGAACAATAAATCTTTTTAATAaggcca

Function

NR:

description
ABC transporter G family member 23-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K25167 ABCH1; ATP-binding cassette, subfamily H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244626.3 True 5099 mRNA 0.45 20 14836482 14879706

Neighbor

gene id symbol gene type direction distance location
LOC111193201 NA coding upstream 70459 14763570 ~ 14766023 (+)
entpd6 entpd6 coding upstream 113805 14695593 ~ 14722677 (+)
LOC103027375 LOC108431653 coding upstream 325452 14495258 ~ 14511030 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding upstream 357583 14451121 ~ 14478899 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding upstream 475246 14289248 ~ 14361236 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding downstream 12721 14892427 ~ 14951079 (+)
wdpcp wdpcp coding downstream 144763 15024469 ~ 15152481 (+)
LOC111193204 NA coding downstream 627674 15507380 ~ 15542286 (+)
eno4 NA coding downstream 802667 15682373 ~ 15704118 (+)
pla2g4f NA coding downstream 984777 15864483 ~ 15891088 (+)
G80662 NA non-coding upstream 14234 14821755 ~ 14822248 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding upstream 190115 14640117 ~ 14646367 (+)
G80588 bicc1,LOC108431656 non-coding upstream 228952 14593099 ~ 14607530 (+)
G80580 NA non-coding upstream 257418 14577324 ~ 14579064 (+)
G80578 NA non-coding upstream 261580 14573582 ~ 14574902 (+)
LOC111193202 NA non-coding downstream 83527 14963233 ~ 14969945 (+)
G80674 NA non-coding downstream 84373 14964079 ~ 14964754 (+)
G80745 NA non-coding downstream 211486 15091192 ~ 15093209 (+)
G80787 ehbp1 non-coding downstream 374708 15254414 ~ 15259347 (+)
G80864 NA non-coding downstream 718973 15598679 ~ 15620782 (+)
LOC111188193 LOC108431664 other upstream 1403 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 33450 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 37878 14730508 ~ 14798604 (+)
G80648 NA other upstream 107683 14725927 ~ 14728799 (+)
LOC103028846 LOC108431654 other upstream 301559 14513410 ~ 14534923 (+)
LOC111193203 NA other downstream 294829 15174535 ~ 15203787 (+)
G80857 NA other downstream 684281 15563987 ~ 15583331 (+)
cmpk2 cmpk2 other downstream 3147601 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 3580417 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 3631916 18511622 ~ 18520947 (+)

Expression


Co-expression Network