tedc1


Basic Information

Item Value
gene id tedc1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16471855 ~ 16486398 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244665.3
GGAGAGTGATCAGGGAGAAAGTTGATTGAACAGGGTGAAGCGTGAGCCGAGAGAAGAGTGAGCATGGCGCAGATTAGGACAGGGCCTGTTTCTTTGGTTAGCGTGTGTTGACAAGGACAACAGGGGAGTTGAGGGCGGAGCAGAGACGTCAGTACGCAGAGCAGTTCGCGATTCTGATTGGATAAGTTACGCGCCAAACTTGTGAGAGTAGGAAGTGAATGtgagctgctgcagcagcagcgctgtactgtagtgtagtctACAGTGAACTATAGTGTTTtacactgtactatagtgaactGCAGTGTACTATAAAGGCCGATGGGATGCAGCGCGAGGCGGGGGTGCGGGTCAGGGAGGTGATTTCCGCGCTCCGCCGCCTGCTGTCCGCGCTCGGGCTGGAGTCAGTTCCCTCCGCTGACTCGTTCAGAAGAGCCAAATTCAACAAGCCGGACTCGACAGAAGACCTGTGGAAGCTGCTCCATCGTCTCCTAATGAAGCTGTTTGAACGGGACTGTACCTGCCAGCCGCCACCAACCTCACCCCTGGACCCAGAGTTGGAGTTTGTGAGGAGTGCCCTGTGGTACACGGGGTACGGGGGCTGGTGGGTGACCAGGGCTCAGACCTGTAAAAGCCCTGGTAAAATAGGGAGCAGAGACCTGCTGCTGGCCCTGGGATGGGTGATGTCCTCAGATAACCTGCTGGAGACTCTGCTGGCAGAGAAAGTTCAAGAGTTGGAGCTCCTCTCCTCCACACCAGCGAGAGTGCCTGGTGGGGAGGATTTGATGACCTGTTTAAGTGTTTCCGAAGGGGGCGGAGCAGAGGGTGGAGATGTGAGAAGTCTGCAGTGGCATTATGGAAAACTGAGGCTGCAGTGGAGAAGTCTTCTAGCAGCTCAGCAAGAGCAGTCCAAGCTTTGCCACAAGATCCAGGCCAAAATGTTCTGTTCACGTGAGCCGGAGGTCAGCACTGCTGATGTTCCTAAAAGATCAGGATCTACAGGACTTCAGAAGGATCTGGAGAGCATTCAGTGCTTAAACAGAATACTTGAGGCCTACCTGGAATGGAAAGCTGTGGAACCACTGTTCTGGTGTTGGATGGACAGTGTGATGGATGGTCACCTCTCGGACCAGAGCAGAGAGAAGGTAACTGACGAGTCACTAAAGGACCGAGCGGTCCCTCACAGCTGCCCCCATGAGGACAATGTCAGGAAGTCCTTCAGACATCTAAACCAGATGCTGCTAAAGCTGCAGACAGACCTCCGACGTGGACGATTGGAGCAGACAACACTCACATTTACTGCACAGGACAGGAGCTCAAGTTCAGCCCAGCTCAGCCCAGAGCAGAAGCGAGAACTGGAGAGGGACGTGGCTGCCCGCCTGCAGGGCTTATCGCTGGCTAACACTCCCACAGCCACGTCCAGAGGCTTCATCCCCAACCTGCAGGAGCCGCCAGCACCGCATTCTGTGCCCAGGCTCCGACACGGTGTCCTGAACCAGGAGAACCAGGAGAACAAGGATGGGACCACGGGAAGGCTCCAGGCCTCGGCAGCTCTGAAGGAACTGAAGGACAGGGAGGCTGTGCTGCTGTGGGAACTGGAGCTGCTAAAGAAAAGCCAAAGACTGGAAATGCAGGCCCAAACCAGTGCGCTGCAGGGACTGGTGTTCATTCCACCACTCAAGAGATGATGCACAGGCTCACAACCAAGAAACTTTTAACACGATCTTACATATATGGATCTTAAATATAGCAACttaaaaattagtttctttgattaaaaaaaaagtggcatacatgtatccaaaagcattgtgtaagactggtggaggagacaaTGCCAAGAAcattgcatgaaaactgtgataaaaaaacagggttattccaccaaatattgatttttggacTCCTAAAACTGTatgagccaaatcagagaaactaattcagaaactgaagtgtctcttattttttccagagctgtatttggtaCATTTCTGCTATTTTgcaacaaacaaagaaaatggaaaatagaACCTTGCACACATGATATGATATGAGTTTCTCCTAAGATTATATTTAAGTTTAGGTTCAGGTAATAAAATTATACTGATGGCTTTGGaacattttatgttaaaattgtAAATCTTTTGCGTGCTGTGTTGTGTCAGGAATTTGTGTATCTGTGTGAGGGTTGTGTACAGAGATGCATCATATATAACACTGGTGGAGGAATCGGTGGTTGGGGAGGTCGGCGCGGGTGGTGGGATTAGCAGATTAAAGGAAGTCATTTTCAGCTCTGATTTTCATCAGGATTATGAAGTGATGTGTTAATCCCGGGGCAGTGTAGAGCATGAAGGATCCTAACAGGATTTCTTGTTACTGCCAATACTTCCATCCTCCTCCAGCCGAGTCTTCGTACTGGCGAGTTCTAGCTGCtgtattttttactgttaatcatGCTCGATTTCATAGAGCCGAATTAAtaaactctctttctctcagtaatGAGAGCTGGAGAGGGGAACTAGCCACAGTGTCCTACACCCACTGTGAAATTAGTGGATCTGGTGAGGCTTCAGCAAGGCTGGAATTGAGCAGATTCGTCTTAATTGAGGACGCACGAATCAAGCCTCATACAAGATTATCCTGGAAGAGAACTCTGGCTCTCATTGCTCTGGCAGTGTTCCCCAATTCTGAGAACTGTTTTCCAGGTTCCAGCagattagtattgttgtt

Function

NR:

description
uncharacterized protein C14orf80 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244665.3 True 2733 mRNA 0.49 8 16471855 16486398

Neighbor

gene id symbol gene type direction distance location
dnal1 dnal1 coding upstream 4097 16463901 ~ 16467758 (+)
LOC111193130 NA coding upstream 31060 16426525 ~ 16440795 (+)
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding upstream 523861 15939403 ~ 15947994 (+)
kcnk18 NA coding upstream 551129 15897524 ~ 15920726 (+)
pla2g4f NA coding upstream 580767 15864483 ~ 15891088 (+)
tmem121 tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding downstream 31818 16518216 ~ 16539460 (+)
ccdc28a ccdc28a coding downstream 99789 16586187 ~ 16593573 (+)
ect2l NA coding downstream 108149 16594547 ~ 16608457 (+)
LOC103021824 efr3b,LOC107697777,LOC107752767,LOC107592778 coding downstream 201520 16687918 ~ 16713041 (+)
LOC103022442 LOC108433935,LOC100537549,LOC107592775,LOC107752809,LOC105908160 coding downstream 234827 16721225 ~ 16729066 (+)
G81061 LOC108433921,LOC107733188 non-coding upstream 66887 16403332 ~ 16404968 (+)
G81048 fut8,LOC108433921 non-coding upstream 76152 16392302 ~ 16395703 (+)
G81018 NA non-coding upstream 198656 16269073 ~ 16273199 (+)
G81017 NA non-coding upstream 204247 16267307 ~ 16267608 (+)
G81011 NA non-coding upstream 300879 16164480 ~ 16170976 (+)
G81083 NA non-coding downstream 39086 16525484 ~ 16526004 (+)
G81074 NA non-coding downstream 82605 16569003 ~ 16662616 (+)
G81103 NA non-coding downstream 128804 16615202 ~ 16616148 (+)
G81105 NA non-coding downstream 131289 16617687 ~ 16618124 (+)
G81106 NA non-coding downstream 133185 16619583 ~ 16621422 (+)
G80857 NA other upstream 888524 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 1268068 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1636776 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1668823 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1673251 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 1540909 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 1973725 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 2025224 18511622 ~ 18520947 (+)
G81704 NA other downstream 2443840 18930238 ~ 18930754 (+)
G81761 NA other downstream 3179338 19665736 ~ 19666047 (+)

Expression


Co-expression Network