dnal1 (dnal1)


Basic Information

Item Value
gene id dnal1
gene name dnal1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16463901 ~ 16467758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244667.3
TCGCGGGGTTCTCTCACTTCTTCCAGCTCCAGTGATCTGCCGAATTGTGCTACCCATCAAAATATGGCTAAAGCAACTTCTATTAAAGAGGCTTTGGTGAAATGGGAGGAGAAGTCTGGTGAGAAAGCAGCCGATGCCAAAGCAGTGAAGCTATTCGGTCAAATACCTCCCATCGAAAAGATGGACGCTTCCCTGTCAACCCTCGTCAACTGCGAGAATCTGTCACTGTCAACAAACTGCATTGAAAAAATTGCCAACTTGAATGGGTTAAAGAACTTAAAGATATTGTCCTTGGGCCGTAACAACATCAAGAACCTCAATGGACTTGAGGCAGTAGGGGATACACTGGAGGAACTGTGGATCTCTTACAATCTCATAGAGAAGCTGAAGGGAATCCACGTCATGAAGAAGCTGAGAGTTCTGTACATGTCCAACAACCTGGTCCGGGAGTGGGCGGAGTTTGTAAAACTGGCAGACATCCCATCCCTGGTAGACatggtgtttgttggaaatCCTCTAGAGGAGAAATATTCTGCTGAGGGCACCTGGATAGACGAGGCCACCAAAAGAGTCCCCAGTCTAAAGAAACTTGATGGGACTCCAGTGATCaaacaggaggaggaggagaaggagggcgAGAGTTAGCTACACCTCCggctttaacactttttttaatggtaCAGTTTTTTatatgagagaaaaaagagtttTTGAAATTAAAGCAAAATGAAGGTT
>XM_015604620.2
CCCAGTCTGCGCATGCGtgtttaaaaccctgacagccCCATAGCAACATAGCAACCGCCGGAGACAACATGGCTAAAGCAACTTCTATTAAAGAGGCTTTGGTGAAATGGGAGGAGAAGTCTGGTGAGAAAGCAGCCGATGCCAAAGCAGTGAAGCTATTCGGTCAAATACCTCCCATCGAAAAGATGGACGCTTCCCTGTCAACCCTCGTCAACTGCGAGAATCTGTCACTGTCAACAAACTGCATTGAAAAAATTGCCAACTTGAATGGGTTAAAGAACTTAAAGATATTGTCCTTGGGCCGTAACAACATCAAGAACCTCAATGGACTTGAGGCAGTAGGGGATACACTGGAGGAACTGTGGATCTCTTACAATCTCATAGAGAAGCTGAAGGGAATCCACGTCATGAAGAAGCTGAGAGTTCTGTACATGTCCAACAACCTGGTCCGGGAGTGGGCGGAGTTTGTAAAACTGGCAGACATCCCATCCCTGGTAGACatggtgtttgttggaaatCCTCTAGAGGAGAAATATTCTGCTGAGGGCACCTGGATAGACGAGGCCACCAAAAGAGTCCCCAGTCTAAAGAAACTTGATGGGACTCCAGTGATCaaacaggaggaggaggagaaggagggcgAGAGTTAGCTACACCTCCggctttaacactttttttaatggtaCAGTTTTTTatatgagagaaaaaagagtttTTGAAATTAAAGCAAAATGAAGGTT

Function

symbol description
dnal1 Predicted to enable alpha-tubulin binding activity and dynein heavy chain binding activity. Predicted to be involved in outer dynein arm assembly. Predicted to be located in cell projection and microtubule. Predicted to be part of dynein complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 16. Orthologous to human DNAL1 (dynein axonemal light chain 1).

NR:

description
dynein light chain 1, axonemal

GO: NA

KEGG:

id description
K10411 DNAL1; dynein light chain 1, axonemal

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244667.3 False 735 mRNA 0.45 8 16464112 16467758
XM_015604620.2 True 740 mRNA 0.46 8 16463901 16467758

Neighbor

gene id symbol gene type direction distance location
LOC111193130 NA coding upstream 23106 16426525 ~ 16440795 (+)
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding upstream 515907 15939403 ~ 15947994 (+)
kcnk18 NA coding upstream 543175 15897524 ~ 15920726 (+)
pla2g4f NA coding upstream 572813 15864483 ~ 15891088 (+)
eno4 NA coding upstream 759783 15682373 ~ 15704118 (+)
tedc1 NA coding downstream 4097 16471855 ~ 16486398 (+)
tmem121 tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding downstream 50458 16518216 ~ 16539460 (+)
ccdc28a ccdc28a coding downstream 118429 16586187 ~ 16593573 (+)
ect2l NA coding downstream 126789 16594547 ~ 16608457 (+)
LOC103021824 efr3b,LOC107697777,LOC107752767,LOC107592778 coding downstream 220160 16687918 ~ 16713041 (+)
G81061 LOC108433921,LOC107733188 non-coding upstream 58933 16403332 ~ 16404968 (+)
G81048 fut8,LOC108433921 non-coding upstream 68198 16392302 ~ 16395703 (+)
G81018 NA non-coding upstream 190702 16269073 ~ 16273199 (+)
G81017 NA non-coding upstream 196293 16267307 ~ 16267608 (+)
G81011 NA non-coding upstream 292925 16164480 ~ 16170976 (+)
G81083 NA non-coding downstream 57726 16525484 ~ 16526004 (+)
G81074 NA non-coding downstream 101245 16569003 ~ 16662616 (+)
G81103 NA non-coding downstream 147444 16615202 ~ 16616148 (+)
G81105 NA non-coding downstream 149929 16617687 ~ 16618124 (+)
G81106 NA non-coding downstream 151825 16619583 ~ 16621422 (+)
G80857 NA other upstream 880570 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 1260114 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1628822 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1660869 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1665297 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 1559549 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 1992365 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 2043864 18511622 ~ 18520947 (+)
G81704 NA other downstream 2462480 18930238 ~ 18930754 (+)
G81761 NA other downstream 3197978 19665736 ~ 19666047 (+)

Expression


Co-expression Network