ccdc28a (ccdc28a)


Basic Information

Item Value
gene id ccdc28a
gene name ccdc28a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16586187 ~ 16593573 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244672.3
AAAAAAAAGCAGGAAGTGTTTTGGGAACTTTTTTGGGCAGTGGGATGTTTTTGGTGGTGTAAGTTTACACTGAGGTAATTCTGCGATGGTGTTAATAAAGGATATCAGCGCGCTGTGACAGAAAGGTTTACAGCtggagATTGTAACACTATGGAGGAGAGGAAGATTAAACGGAAAAGCCCCAGACCGTCGGTCCCCCAATCTGCTCCTCCAGCCACCACCCGAAAGACTGGCATTCCCAGCAGCAGATCCTTAGGATTAGGGATGGGCACCCACTCCAATCAGAAGAGCAGATGCCGCAAaggagtgagagaaaaacagagagctcAGACTCAGGCCAGTAGAAACAGCCAGACTGCTTCCATTCAGCACTCCTTCCTCACAGACGTGTCTGATGTGCAGGAGATGGAGAAAGGTCTGCTGAGCCTCCTTAACGACTTCCACTCCGGAAAGCTCCAAGCTTTTGGGAATGAGTGTTCCATTGATCAGATGGAGCATGTTCGAGAGATGCAGGAGAAGCTGGCCAGACTGCACTTTGACCTGTATGGAGAGGTAGATGAAATGCCTGAAGACCAACGCAAGGTCGCCTGTGATACCAACATGGACAAACTTCTAATGAACCTGGAGGAGTTAAGCTCTTCGATACAGAAGCTGAACCTTGCTGATAGCCAGGAAGCCCCCAGAGCGTCCAGTATTTGAAGCTCTGGATCCGGCATGAAGATCTAGTTGGTGTGGAGGGTGTTCATATCTGAAAGCGTCACCATTAACCACCTGCAGGAAGAGTAGACCTACAGGACTGGCTCACTGCACAGTTTACTACTAAATGCAATATCAAGATCACTCATAACGTTACACATCGCACACCTCACCACCTAACCATCCGTGTAGGAGCTAGCTGTAATGCATCTGTCCATCCACAGGGGTCAGTATATCCATCTTTACTTTCAAGTCCCTGTCCGTTTGAGGCTAagttagaaaacaaaaaaaggctcATTTTGGCCATTTAGTAGTAGTCAGgtgactattttttttgttgtgtccACATGTTTAAGACCTAATTACTGGAATTCtgatgattaataattaataatttagaaTAAACCAGAATAACACCAGAATCTTAACAAACTCAACAGATTAGGTGTTAATAGATATCCTGTGTCAACGTTTGTAACTGTCACAAATTCACACAACTACGTAGCTAACCCATTAGCACCCATTCCATCAGTAGAGAAATTACACATAAAATGTACATACAGCATATaagctttttattaaaacagcttaTTGCACTGGTATTTCATTAGTTTTGCTACCCAGCTAACAAGTTAGCAAACATTCCACCAGTAGATAACTCCTATATAGCATATcagctttttattaaaatagttaGCCATATGATTATTTCTTTGGCTGCAGCTACAGTGTTTATCACTGAGGGGTTGTTATTTACAGGATTAGCAGAGCGCACTGGACTCTACACTGCCCCATAAAACACGAGGGCACTGTATAATTGAACGTTTGAATTTGAAATAGTAAAGCTTCCTACTGAAGGAATGGGTGCTAATTTGTTAGCTGGGTGGTTTCTAAGCTACAATAAGTCTAGAAGGGATTATAGTAACAAAAATCTGATGGCACAATCCAACTTTACAAAATTCTAATGTTTCCTAAATTTATATTGTGGAAAAAAGATGAAAGCCCATGTCTTCTTTACACAtactaaataagaaaaataaaatcatgatgTTTTACCCACAGTTTTCTGTTTTACAATTTAGCCCCAAACAGATAACTGATctgataaatgttacactgaaccccccccccccagtggTGGACtgataatcagtatatttattgCTGAATGCCTTTGAGTTGTGCAATAtgagaacatttgcaatgtcaCTAATTCACTTTATCGaataactattttttaattctcAAGATACGAATATTTTTCATCTTTGGACCCTTTGTTATTTAAtcagtcactgtgtgtgtgtgttgggatttattaagtattttaaacccctTTTAAAACTGAAGATGCCCAAAAACCCCATTAAATCCCATCAATATTTGCCTTATTCTGAAGACTTCTCTGTcttgagtatgcagaaaaacgggtTCTGCACTCGAAAGTACCTGGAGGAATGTTATTTTCTAATATTAAAAGCCTTTGTATATTGCAGATGCacctactttattttaaaatgatttacatttctaatataacTGGTTGAATGTTCATGGTTTCTGTGGCTTGAGTTTGAGAGTGCCATCAATAAAGGTCACATGCTTCCTAATGACCCTGA
>XM_022672817.1
AAAAAAAAGCAGGAAGTGTTTTGGGAACTTTTTTGGGCAGTGGGATGTTTTTGGTGGTGTAAGTTTACACTGAGGTAATTCTGCGATGGTGTTAATAAAGGATATCAGCGCGCTGTGACAGAAAGGTTTACAGCtggaggtaaagagagagaATTGTAACACTATGGAGGAGAGGAAGATTAAACGGAAAAGCCCCAGACCGTCGGTCCCCCAATCTGCTCCTCCAGCCACCACCCGAAAGACTGGCATTCCCAGCAGCAGATCCTTAGGATTAGGGATGGGCACCCACTCCAATCAGAAGAGCAGATGCCGCAAaggagtgagagaaaaacagagagctcAGACTCAGGCCAGTAGAAACAGCCAGACTGCTTCCATTCAGCACTCCTTCCTCACAGACGTGTCTGATGTGCAGGAGATGGAGAAAGGTCTGCTGAGCCTCCTTAACGACTTCCACTCCGGAAAGCTCCAAGCTTTTGGGAATGAGTGTTCCATTGATCAGATGGAGCATGTTCGAGAGATGCAGGAGAAGCTGGCCAGACTGCACTTTGACCTGTATGGAGAGGTAGATGAAATGCCTGAAGACCAACGCAAGGTCGCCTGTGATACCAACATGGACAAACTTCTAATGAACCTGGAGGAGTTAAGCTCTTCGATACAGAAGCTGAACCTTGCTGATAGCCAGGAAGCCCCCAGAGCGTCCAGTATTTGAAGCTCTGGATCCGGCATGAAGATCTAGTTGGTGTGGAGGGTGTTCATATCTGAAAGCGTCACCATTAACCACCTGCAGGAAGAGTAGACCTACAGGACTGGCTCACTGCACAGTTTACTACTAAATGCAATATCAAGATCACTCATAACGTTACACATCGCACACCTCACCACCTAACCATCCGTGTAGGAGCTAGCTGTAATGCATCTGTCCATCCACAGGGGTCAGTATATCCATCTTTACTTTCAAGTCCCTGTCCGTTTGAGGCTAagttagaaaacaaaaaaaggctcATTTTGGCCATTTAGTAGTAGTCAGgtgactattttttttgttgtgtccACATGTTTAAGACCTAATTACTGGAATTCtgatgattaataattaataatttagaaTAAACCAGAATAACACCAGAATCTTAACAAACTCAACAGATTAGGTGTTAATAGATATCCTGTGTCAACGTTTGTAACTGTCACAAATTCACACAACTACGTAGCTAACCCATTAGCACCCATTCCATCAGTAGAGAAATTACACATAAAATGTACATACAGCATATaagctttttattaaaacagcttaTTGCACTGGTATTTCATTAGTTTTGCTACCCAGCTAACAAGTTAGCAAACATTCCACCAGTAGATAACTCCTATATAGCATATcagctttttattaaaatagttaGCCATATGATTATTTCTTTGGCTGCAGCTACAGTGTTTATCACTGAGGGGTTGTTATTTACAGGATTAGCAGAGCGCACTGGACTCTACACTGCCCCATAAAACACGAGGGCACTGTATAATTGAACGTTTGAATTTGAAATAGTAAAGCTTCCTACTGAAGGAATGGGTGCTAATTTGTTAGCTGGGTGGTTTCTAAGCTACAATAAGTCTAGAAGGGATTATAGTAACAAAAATCTGATGGCACAATCCAACTTTACAAAATTCTAATGTTTCCTAAATTTATATTGTGGAAAAAAGATGAAAGCCCATGTCTTCTTTACACAtactaaataagaaaaataaaatcatgatgTTTTACCCACAGTTTTCTGTTTTACAATTTAGCCCCAAACAGATAACTGATctgataaatgttacactgaaccccccccccccagtggTGGACtgataatcagtatatttattgCTGAATGCCTTTGAGTTGTGCAATAtgagaacatttgcaatgtcaCTAATTCACTTTATCGaataactattttttaattctcAAGATACGAATATTTTTCATCTTTGGACCCTTTGTTATTTAAtcagtcactgtgtgtgtgtgttgggatttattaagtattttaaacccctTTTAAAACTGAAGATGCCCAAAAACCCCATTAAATCCCATCAATATTTGCCTTATTCTGAAGACTTCTCTGTcttgagtatgcagaaaaacgggtTCTGCACTCGAAAGTACCTGGAGGAATGTTATTTTCTAATATTAAAAGCCTTTGTATATTGCAGATGCacctactttattttaaaatgatttacatttctaatataacTGGTTGAATGTTCATGGTTTCTGTGGCTTGAGTTTGAGAGTGCCATCAATAAAGGTCACATGCTTCCTAATGACCCTGA

Function

symbol description
ccdc28a Predicted to enable guanyl-nucleotide exchange factor activity. Orthologous to human CCDC28A (coiled-coil domain containing 28A).

NR:

description
coiled-coil domain-containing protein 28A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244672.3 False 2315 mRNA 0.40 6 16586187 16593573
XM_022672817.1 True 2328 mRNA 0.40 6 16586187 16593573

Neighbor

gene id symbol gene type direction distance location
tmem121 tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding upstream 46727 16518216 ~ 16539460 (+)
tedc1 NA coding upstream 99789 16471855 ~ 16486398 (+)
dnal1 dnal1 coding upstream 118429 16463901 ~ 16467758 (+)
LOC111193130 NA coding upstream 145392 16426525 ~ 16440795 (+)
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding upstream 638193 15939403 ~ 15947994 (+)
ect2l NA coding downstream 974 16594547 ~ 16608457 (+)
LOC103021824 efr3b,LOC107697777,LOC107752767,LOC107592778 coding downstream 94345 16687918 ~ 16713041 (+)
LOC103022442 LOC108433935,LOC100537549,LOC107592775,LOC107752809,LOC105908160 coding downstream 127652 16721225 ~ 16729066 (+)
LOC103031040 fam150b,LOC108425626 coding downstream 167250 16760823 ~ 16767006 (+)
sh3yl1 sh3yl1,LOC107733179,LOC107594817,LOC107674108 coding downstream 188964 16782537 ~ 16838704 (+)
G81083 NA non-coding upstream 60183 16525484 ~ 16526004 (+)
G81062 NA non-coding upstream 111533 16406264 ~ 16474654 (+)
G81061 LOC108433921,LOC107733188 non-coding upstream 181219 16403332 ~ 16404968 (+)
G81048 fut8,LOC108433921 non-coding upstream 190484 16392302 ~ 16395703 (+)
G81018 NA non-coding upstream 312988 16269073 ~ 16273199 (+)
G81103 NA non-coding downstream 21629 16615202 ~ 16616148 (+)
G81105 NA non-coding downstream 24114 16617687 ~ 16618124 (+)
G81106 NA non-coding downstream 26010 16619583 ~ 16621422 (+)
G81124 NA non-coding downstream 85075 16678648 ~ 16681932 (+)
G81190 NA non-coding downstream 123422 16716995 ~ 16719435 (+)
G80857 NA other upstream 1002856 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 1382400 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1751108 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1783155 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1787583 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 1433734 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 1866550 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 1918049 18511622 ~ 18520947 (+)
G81704 NA other downstream 2336665 18930238 ~ 18930754 (+)
G81761 NA other downstream 3072163 19665736 ~ 19666047 (+)

Expression


Co-expression Network