slc4a1ap


Basic Information

Item Value
gene id slc4a1ap
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33831270 ~ 33849509 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247681.3
AAACAGCAGATCGGAGCGGTTTAGCTGCTACACTAAACAGTCATGGAGGAGACCATGCCTTCAAGCTCGGAGCCGGAGATGTTGGAGGATCCTGAGGTTCCAGAGGAGCCGGGGAACAGCGAGGAGAAGCCCGCTCCAGAGAAGCCCGCAGATCCGTTCAAGAAGCCCGATATCTTTGCGGCGCCGTCCGTGGTGGGGAGGCGGAGCGGAGGAGCGGCGGAGATTGAGAAGGTTAGCCGGGTTGAGAGCTCCTCTCCCGGGCAGGCAGGAGGGTCTGGAGACCGCAGACCTGCTCCAGAAGATCCAGAGGCTTCAGAAGCTCCAAAAGACCTAGATGCTCCAGAAGATCAGGTGCCCACCTCCAAACCACCCGTTCATCCACCACTTCCTGAAGGGTCAGGTCCAGACCAGAGACCTCCAGTGATAGAGAAGAAGCCCCGTGCTGTAGAAGAAAAGCCCACCCACCCCAAACCCAAGCATGAGGTCAAAGGCCCCAAAAAAGCCCCCATCAAAGTGCCCCCCTCTGGTAAATTCCCCCCTCTGCCCTACTCTGAGCCCCCCTGGGCTGGGGTGGCCACTGTACCCTACTCCTTTGAGCTTCTGAAGAATGGAGCCATCCTGGACTCCATCCCTCTGACCCAGCAGAGCTACTTCGTGGTGGGCAGGTTACCTGTGTGTGATGTGTCCCTGGAGCACCCCTCCATATCCCGCTACCATGCTGTGGTCCAGTACCGGGGTCTGGTGGGGGAAGAGGGTTCTGTGGGAGAGGAGGCCGGATTCTACGTCTACGACCTGGGCAGCACTCATGGCACCTTCCTAAACAAGAACAAGATCCCACCCAAGACCTACATCAGACTGAGGGTTGGGCACGTCCTGAAGTTTGGAGGAAGCACCAGGCTCTTCATTCTTCAGGGTCCCGAGTCTGATGAGGAAGCAGAGTCTGAGCTGACGGTAACAGAGCTGAGAGAGCGGGCCAGGATACAGCGAGAAGAGCTGGAGAAGAGAATGATGGGAGATGGAGGttctgatgatgatgacgacgaCGACGACAACAACAGTGATAAAGCTGCAAAGAATGGAGAGCAGGAGTCTTCTAAAAAGAGCTCCCCAGAAGATACCGGCTGTTCTTGGGGAATGGGAGATGAGGCCGCCCCAGAGGAGGATGAGAACGAGGAAAATCCATTCGCCACAGAGTTTCATGAAGACCAGGAGGCAGCCTACTTGAAAGATCCTAAAAAAGCTCTGCAGGGCTTCTATGATCGTGAAGGAGAAGAACTGGAGTTTGAATATGAAGACAAAGGTCATGGCACGTGGCTCTGCAGAatcaaGTTGCCAGTGGATGATGCAGTGGGCAGGCAGCTGGCCGCTGAGGTCACTCACTCGGGGAAGAAGAAGGATGCCACTGTGCAGTGCTGTTTGGAGGCCTGCCGCATGCTGGAGGCTCGAGGACTACTGAGACAGGAAGCAGTCTCCCGCAAGcgtaaaaagaaaaactgggAGGACGATGACTATTACGACAGCGATGACGACTCGTTCCTGGACAGAACAGGTACagtggagaggaagaggaaggagcGCATGAAGAGGGCCGGCAAGACTGAGGATCGGCCTGATACCTACGACTCCCTGGTTTCAAAACTTGCTGAAGTGGAGAAAGAAGTGTCCGAAACAGAGAAGAAACTAAATTCTTCTGGAAAAGGAGGCTCCAGCTCATCCACAGAGGATCCTCTGGATGCGTTTATGAGTGCCGTACGCAGTCAGGCAGCTCTGGACGGCGTGGAGCGGAAGAAGCTACACCTGCACGTGGCCGAGCTGAAGAAGGAAAGTCAGCGGCTGCGTAAACTTATTGAACTGACCAGACCTACGCAGCTGCCCTCCCTGCAGAGCACtcaGTCTTCTGAGTCGGAGAAGCCCAAGAAATTAGTCCTGCCTCAGTTTGGAGCGATGAAAGGTGGCAAAAAATTCAAACTGAAGACAGGAACTATTGGGACTCTGCCTCCAAAGAGACCCAACTTACCCCCTGAGCTCTTCAACATGAAAGAACTGCCCCCTGGtggagaggaggaagaagaagaagaggaggaggaggaggaagagacagagaaaccAGAGGaaatggaggaggaggagagcaaAGATCAGGATAAAGAAAGCACAGCACAGCCAGAGGATGATATGGAGGCTGATCAGTCTGATAAGATGCTCAGTAAAGAGGAATCAAACGCTGGACGGCAGTCAGACGACACCTCGTCTCAGAGCCGTAAAGagATGGGAGAATctcacagacaaacacagaagAAAGCTTCATCACATGATAATAAAGAAAAGGTTAAATCAGGTCATCACTCAGACTCGTCTGCAAAAGGTGAACAACCGCAGCCCCAGaagaagagtggcaagaagatgATTGGCCCCAGCAggCCTCCAAGCACTGTATCCAAGCAATACCCAGAGGATGATCCTGACTACTGTGTGTGGGTTCCTCCAGCAGGTCAGAGTGGTGACGGTCGGACTCATCTCAACGACAAGTACGGCTACTGAGAGGGGGATGGACCAGTTTCTTTTCAAGCAGGGTCCACTTCATCTGAACAACTGAGCACCACATGGCTACATTTCCTTTTAGTAAAGAACTCGCTCGCTCGGACGGGTCAAGAAGACTTCAGCCATTTACGGATGAGAAGGGCATTGTGAGCGAGACCTTTTCCGGCATTCACAGCCTCGGCCAACTGTTTTGCACTTGTATTGCGCTTTTCCACCTTAGTGCACTTAGTGCACTTCCAGAGGAGAGCTGGACTGGAGTTTAAGGACTGGGGAAAGTAGAGGATAGTTAGATTTTGAACATGTAAGCAATGATTAAGGTTAAAAAGGAAATACATTTGGAAATCAGATCAGCTCAGATCAGCTCAGCTTTAAACatagacatgccaaaagtcatggaacaggagtattgtattgtgttgagTAGACTGCTGCACTAAACTGTGGGATATGCTTATTTAGCCTTTTGCATTTAATAATATTGATGTGATGTCTACAAGAGTCTGTTTGcttggacaattttagccagatacCGCCGGTCACGATCACTACCACCCACTGCAAGGTGTCCCTGCAAAACCTCTGAAGTGGAATTTCCCGTCCAAGATCTGCCACCCTCGCTTAATTtcaggctaatgctaacttgtTAAAAGCCAGAGAGAGTGTCCTATTGGGcagcacaggcttctgttagctgatgtatcagagctgggttgctgcactttcctcagagtgctCTGTGATACTACCCAGTGATGCAGTGTCtggctttacatgtatcagacgAGTACTAGCATGTGTTggcttcaatttttttttttagtgtttgggcataactagtgatagagggagttcATATAAATGAggattgtgtatttttttcttccaaattgGGAGACAAATGGGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247681.3 True 3447 mRNA 0.51 15 33831270 33849509

Neighbor

gene id symbol gene type direction distance location
c9h2orf71 NA coding upstream 759304 33061183 ~ 33071966 (+)
LOC103035281 NA coding upstream 773573 33042845 ~ 33057697 (+)
LOC103035585 LOC108423467 coding upstream 908270 32729119 ~ 32923000 (+)
LOC103038371 NA coding upstream 1401005 32427026 ~ 32430265 (+)
LOC103038892 NA coding upstream 1405958 32420132 ~ 32425312 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 163248 34012757 ~ 34183355 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 362908 34212417 ~ 34226780 (+)
mocs1 mocs1,LOC107656745 coding downstream 393610 34243119 ~ 34264685 (+)
LOC111193251 NA coding downstream 449214 34298723 ~ 34301134 (+)
kif6 kif6 coding downstream 644316 34493825 ~ 34633946 (+)
G85576 NA non-coding upstream 72510 33758533 ~ 33758760 (+)
G85573 NA non-coding upstream 85799 33744952 ~ 33745471 (+)
G85569 NA non-coding upstream 110310 33720723 ~ 33720960 (+)
G85566 NA non-coding upstream 113891 33711598 ~ 33717379 (+)
G85565 NA non-coding upstream 151253 33679773 ~ 33680017 (+)
G85588 NA non-coding downstream 2679 33852188 ~ 33852388 (+)
G85591 NA non-coding downstream 4808 33854317 ~ 33953373 (+)
G85596 NA non-coding downstream 41503 33891012 ~ 33891582 (+)
LOC111193250 NA non-coding downstream 76653 33926162 ~ 33929125 (+)
G85602 NA non-coding downstream 96688 33946197 ~ 33949266 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 1389952 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 1612508 32199183 ~ 32218762 (+)
G85189 NA other upstream 2006882 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2025867 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 2361714 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 897305 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 1438706 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 1787301 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 3634512 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3980246 37829755 ~ 37933289 (+)

Expression


Co-expression Network