LOC103028446 (LOC108423447,LOC108269492)


Basic Information

Item Value
gene id LOC103028446
gene name LOC108423447,LOC108269492
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34787350 ~ 34792462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248452.3
TCGACTCTTATCAAAGAACCGAGTCAAGTGATCCGACTCACTGAACAGAGCTCCATCAGTATCTGGCACAATGGCGCTTTGAGCACGTAAACACCGTTCAAAATCGGTGAAATCAGCTTCTTCTCGCACAGTTACACACGTTTACCAGATGTCCGTGGCGAATGCGAGGCAGACGGTCTTTAATCCGGTAGTTCCTTACACAGGAACCATAGCAAGTGGGCTCCATCCAGGAGAGATGGTTGTTATTCAAGGCTGTGTCCTCAATGAAGCTGACAGGTTCCAGTTTGACCTGGGCTGTGGCAGCAGCACCAAACCTCGGGCAGACATCGCCTTCCACTTCAACCCTCGCTTCAGGAACCCTCCCAGCATCGTGTGCAACTCTCTGCAGCAGGGCAGCTGGGGCCGGGAGGAGAAACTCGATCAGATGCCCTTCAGACAAGGAGCATCCTTTGAGACAATCATTCTGATCCATGAAGATGTCTTCAAGGTTGCAGTAAACGGTGCCCATATACTGGAGTATAAGCACAGAATCCCTCTGGACAGGGTGGACACATTCTGCATATCAGGAAAAGTCAAAATACATGCCATTGGTTATGTCCCCAACTCAGCAATATTTTCAGAATCAGGTGATTTGAGTATACCCTACAAAGGCAGTATACTTAAAGGGCTCAGATCAGGACAGCACATCACAATAAAGGGGCATATCAGCTTATTCCCTCACAGTTTTACCATAAATTTGAggtgcagccaatcagaaaatgTCGCCCTGCACCTTAATGCTCGGATGAAATCGAGCATGTTCATCCGCAACTCTTTCTTAAGCGAGTCGTGGGGCCCGGAGGAGCTTGAGCTGCCGTTCTTCCCTTTCTCTGCTGAAAAATACTTTGAGATAATCATCCTGTGCCAGGCCCATCAGTTTAAAATTGCTGTAAATGGAGCCCATCTGCTGGACTACAGGCACAGAGTGCAGGACCTGAGCACCATTAACCAGCTGGAGGTCCTGGGGGATCTGGAGTTACAGGACATTAAGCTGTGGTGACTTCACATCATCAGCAACAGgacattgtgttttcttttctgtttcagcctctttctccctctttcagTTAGGAGTATCCCTGCGAGGTCACCTGTAGTTCCTGTGCACTGACCTGGTGAGAACAAGAGAGGTTCTGAAACATGGTATACAGAGATTACCCTAAACTGGTATCTGGTATAGTTTCTTTTAGGAAAAGAAAGTGGTGACAAATTAAGTTTTTTAGCGTATAATAATGTGATTAAAATTTGGCACAAAGCACTgctacatatttaaatattaaatattatctaCAGTATAAGTAGATAGCCAGTGGCAACACCTATATGCCTTATATGCTACAACTTGAGGAACAATTAGCATTTTTTATGCTTAAAattcagttaaaatatataaatataaaccacCTCTAGCAATTGCCAGCTGttaaagaaaattataatacaggcatgtgtgcattttttatttaaagtcctAAATTGGACATTGCCACGTGTTTAACATAaccaatataatataataaactgctATAATGAATATCCAAAACTGATTGGACTACGGTGGACTGTAATACATATAGTTTAAAGGCCATCTTTAGACTCTTGGTGAAAAAGGAGGACTGGGGGCAAATAATGGACTGTTACAGAGTAATTGTATTCCTGTTATAAATGTACTTTATAGATAAatgaagataaatataaatattaaagcatgtaataaataaattgttttcaataaatatatatatggtgaaAAGTACTGTGTTA

Function

NR:

description
PREDICTED: galectin-8-like

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248452.3 True 1803 mRNA 0.42 8 34787350 34792462

Neighbor

gene id symbol gene type direction distance location
LOC103028138 gnmt,LOC107748599,LOC107566124,LOC107706413,LOC107553737 coding upstream 1235 34767062 ~ 34786115 (+)
kcnk5 kcnk5 coding upstream 51775 34705038 ~ 34735575 (+)
LOC103040842 LOC103040842,LOC108423400 coding upstream 126570 34648064 ~ 34660780 (+)
LOC103040539 LOC103040539,LOC108423401,LOC108270190 coding upstream 144127 34637839 ~ 34643223 (+)
kif6 kif6 coding upstream 153404 34493825 ~ 34633946 (+)
LOC103041454 NA coding downstream 472471 35264933 ~ 35269468 (+)
LOC103042380 LOC108437745 coding downstream 875238 35667700 ~ 35686642 (+)
LOC103042687 kif13b,LOC107751739,LOC107583481,LOC107755780 coding downstream 1003688 35796150 ~ 35873071 (+)
efcab11 efcab11,LOC107755768,LOC107680765,LOC107588272,LOC107693110 coding downstream 1267388 36059850 ~ 36139729 (+)
foxn3 foxn3,LOC107751738,LOC107680774,LOC107583483,LOC107755777,LOC107693108 coding downstream 1278850 36071312 ~ 36379111 (+)
G85709 NA non-coding upstream 150150 34636506 ~ 34637200 (+)
G85710 NA non-coding upstream 211132 34575847 ~ 34576218 (+)
G85700 NA non-coding upstream 269907 34483579 ~ 34517443 (+)
LOC111193252 NA non-coding upstream 467934 34271932 ~ 34319416 (+)
G85602 NA non-coding upstream 838084 33946197 ~ 33949266 (+)
G85834 NA non-coding downstream 403454 35195916 ~ 35196276 (+)
G85835 NA non-coding downstream 419145 35211607 ~ 35218417 (+)
G85845 NA non-coding downstream 538772 35331234 ~ 35331537 (+)
G85842 NA non-coding downstream 549895 35342357 ~ 35349126 (+)
LOC111193253 NA non-coding downstream 558365 35350827 ~ 35364586 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 2346032 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 2568588 32199183 ~ 32218762 (+)
G85189 NA other upstream 2962962 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2981947 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 3317794 31454984 ~ 31469556 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 495753 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 844348 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 2691559 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3037293 37829755 ~ 37933289 (+)
G86497 vrk1,LOC106602366 other downstream 3872705 38665167 ~ 38698313 (+)

Expression


Co-expression Network