LOC103040842 (LOC103040842,LOC108423400)


Basic Information

Item Value
gene id LOC103040842
gene name LOC103040842,LOC108423400
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34648064 ~ 34660780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248491.2
AAAGGACTGAAACAGGGAGCACTGCGTGCGCACTCTGATTTGCCTGTAACACAAACATGGGTAAATCCACACCCAACACCTTCCCAATCTGCAGGAGCCACAAACTGGGAAACCTGGGGAGCAAGAGTCTGGGGCCAATATGGTCTCCATACATACTGGGAAGTTTTTTACGCGGCTGAATTTGATCAGattcctctctctcctgctgctgGGAACGGTGTACCTGTCCTACGTCCTGATTGGAGGGGTGGTCTTCTGGAAGCTGGAAGGAGAACAGGTCGAGAGCCAGATAACTATTCTAAAGGAGAAGAGGAATACTCTGTTCCAGGTTTACCCATGTCTCAGTCAACAAGGTCTGGAGGAACTGGCAGAGTTAATCCAGGCGGCCACTAAGAACGGACTCAGCCTGAAAGGAAACCACACAACCGGAGGCTTCTTTAAATACACCAGCTCTGCTGTGTTCGCCGCCACCGTCGTTACAACCATCGGTTATGGAAATATGAGTCCCAGTACAACACCCGGTCAGATCTTCTGTGTGATCTTCGCCATCTTTGGAATTCCTCTAAACATGGTGGTCTTGAATCGAGTGGGAAAGTACATGCTGGCTATCGAGAGAAAATTCTGCAATTTCATTGCAACAAAGACCAACTGCCAGAAATTTATGAGGGTTTCCATCCACTTCCTGTTCTTCCTCATCTCGTCAGTGCTGTATTTCATGGTTCccatgctgctgtttaaacagtATGAGGGCTGGACGTACGCTCAGGCCATCTACTACTGCTTCATCACCCTCAGCACCATCGGCTTCGGAGACTACGTCGCAGACTATAACCCTGATAAGGAATATCCAGACTGGTACGGCTGTATTATGGGAGTTTGGATATTCTTTGGTCTGGCTTGGCTCGCTTTAGTCATCAATCACTCCATCGATCTGCTGGAGGGCTTTAATACTTACATTAAATCAGAGAGAATCGCTGGAAACAGAAATCCTCTATCagagggggagaaagagaaggagctGCCAGAGACGCAAGAGAAACCGGAGAAAGAAACTGGACATTAGAGTCGCAGATTAGTCTGATTGAGTTTATAAATGTacatacattaataaatgttttattttattttattttattttattttcatctgGTCACAAAGATCAGACTGAATATCAGACCATAAAACAACACGACTACAGAACAAACAGCAACACCACTAGGTCAGTCTTGTATCCTTTATTAATGaactgtaaatatatactgtatgtatgttgtgtttttctctcataTGTTCATCATTTGAGGGAAAGTGGTTTGTATAGACCTGTACAGCTGTTTCAAACCTTATTTATTTAAGACTCTGATTCCCAGGTATGACAGCTAAAAAAActgctgttacagtagttcacttaaagtacaatgtatcaagttaaaa

Function

NR:

description
potassium channel subfamily K member 17

GO: NA

KEGG:

id description
K04925 KCNK17, K2P17.1; potassium channel subfamily K member 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248491.2 True 1434 mRNA 0.44 5 34648064 34660780

Neighbor

gene id symbol gene type direction distance location
LOC103040539 LOC103040539,LOC108423401,LOC108270190 coding upstream 4841 34637839 ~ 34643223 (+)
kif6 kif6 coding upstream 14118 34493825 ~ 34633946 (+)
LOC111193251 NA coding upstream 346930 34298723 ~ 34301134 (+)
mocs1 mocs1,LOC107656745 coding upstream 383379 34243119 ~ 34264685 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding upstream 421284 34212417 ~ 34226780 (+)
kcnk5 kcnk5 coding downstream 44258 34705038 ~ 34735575 (+)
LOC103028138 gnmt,LOC107748599,LOC107566124,LOC107706413,LOC107553737 coding downstream 106282 34767062 ~ 34786115 (+)
LOC103028446 LOC108423447,LOC108269492 coding downstream 126570 34787350 ~ 34792462 (+)
LOC103041454 NA coding downstream 604153 35264933 ~ 35269468 (+)
LOC103042380 LOC108437745 coding downstream 1006920 35667700 ~ 35686642 (+)
G85709 NA non-coding upstream 10864 34636506 ~ 34637200 (+)
G85710 NA non-coding upstream 71846 34575847 ~ 34576218 (+)
G85700 NA non-coding upstream 130621 34483579 ~ 34517443 (+)
LOC111193252 NA non-coding upstream 328648 34271932 ~ 34319416 (+)
G85602 NA non-coding upstream 698798 33946197 ~ 33949266 (+)
G85834 NA non-coding downstream 535136 35195916 ~ 35196276 (+)
G85835 NA non-coding downstream 550827 35211607 ~ 35218417 (+)
G85845 NA non-coding downstream 670454 35331234 ~ 35331537 (+)
G85842 NA non-coding downstream 681577 35342357 ~ 35349126 (+)
LOC111193253 NA non-coding downstream 690047 35350827 ~ 35364586 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 2206746 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 2429302 32199183 ~ 32218762 (+)
G85189 NA other upstream 2823676 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2842661 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 3178508 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 86034 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 627435 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 976030 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 2823241 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3168975 37829755 ~ 37933289 (+)

Expression


Co-expression Network