tyro3 (tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665)


Basic Information

Item Value
gene id tyro3
gene name tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23454001 ~ 23473086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251896.3
GGGATTTCACACATTCCCCCACAGCGCTGAAACATTTGGAAGTGTGAGGAGCTCCGTCCAGTTTCCTTTACTGAACCAAGACCGCGAAGCCGGGATGTTTGGATACTGCTCGGCTGTGTGTGGAGTATGGAGAGTGTTCAGGCGGGGATGAGGTCTGAGCGgggttctgctgctgctgctggctgcGTTGGAGACTCTGGGGACGGGActgtggagctgctgctgccgctgttcGGCACTTGCTGCTGCGAATACCGAGTAAATTAGCGATTCAGCAACCGCGCCTGTTTAAAGTTGCTGGTCTTGTTGATTCAGCTGAGGTGAAGCGACCGAGTCGCGTTTCAGAGGATGCTAAAATGGGAATTAAGTTTTGGATAATATTTATCCTCGTTCATTATAGTGAAGGAGTTCACGGGCTGAAGTTCACCAAGAACCCAGCCAACCTCACAGTAACCCAAGGTAACATGGCCCGTCTGGGCTGTGCCATTGAGGGCCTGAGCGAGCCGGAGATTGTGTGGATGAAAGATGGAGAAAAGCTGTACAGCACGGATCAGATGTACATCACTCTAGAAGCCCATCACTGGGAGACCTTTCACAGTGTGAAGTCAGTCCAGCAGCAGGATGCTGGGAAGTACTGGTGTGAGGTTGAATATTACGGCACGGTCATCTCCTCCGAGCCAGCTTGGATCACAGTAGAGGGTGTGCCTCATTTTACTAAGGAACCTGAGGATGTAGCCACATTTCCAGGAGCACCATTTAACCTGACGTGTGCTGCTGTTGGACCCCCTGAGCCAGTGGAGGTGCTCTGGTGGCTGGGGGGAGTGCAGGAGGGAGATTTTAGGCCCTCTCCATCCGTTCTCTTTGTCCGGGGTGTGAACGACAGCGTTAAGTTTTACTGTGAAGCAAAGAATGCTCGAGGGATTTCTATCTCTCGGACTGGCACTGTGCACATCAAAGTACTCCCAGATTCTCCTACTCATGTCAACATTGACCAGGTAGCCCATAATGTGACAGTAATGTGGAGGCCTGGGTTCACTGGGCATTCTGACCTGTCAACCTGCACCATTCAGATGTCTAAGAGCCCTGGGAGGAAGGTCAAACTTCCTGAATTGCAAGTTACTGTGCCACCGTTTCAGCACACCATTGACGGACTAAACAGTCATACCAACTACAGTGTGCGAATCCGGTGTGATAATGAAGTTGGCTCCTCCCCTTTTTCTCCCTGGATTGAATTTGAAACACCAGAAGCAGTGCCTGCAGCAGCTCCCAAGAACTTCACCTTTGAACTAACAGAGCAACAGCTCTCTCTGAAGTGGGCAGCGTTGGAGGAAGAGGAGCTGAATGGACGATTGCTGGCATACAAAGTGCAATGGAATCTTGGAGGAGAGAGTCAGGAGCCTCTACTGTTTAAGGAAAATATTGCTCATATGTCTGGAGGAGGCCGTTTCTTTAATGCCACTTTCCAGGTGTCAGCATGCACCATGGCAGGGTGTGGGCCCTGGAGTCAGCCAGTGCTCATTATGCCAGCCTCAGTTATGCAGGCTCAAACTCAGAGAGGGCACATGTGGGTAGGTCTGATCTTAGGTCTGCTGGTGGCTACGATGGTGGGACTGCTGCTGACAGTCTTGGTACACAGAAGAGGCAAAGAGACCCAGTTTGGAACTGTATTCAAGCCTCCAGGCGGAGAGACTGTGGTGTCTTTCACAGCAGCAAGGTCCTTCAACAGGCAGTGCCCTGAGCTCCCAGAATCCAcctTGGACAGTCTTGGCATCAACGATGAATTGAAGGCCAAACTACGGGATGTACTCATCCCAGAAAGGCTCCTCACTCTTGGACACATGCTAGGCAAAGGTGAGTTTGGCTCAGTGAGAGAAGCCTTTCTAAAAACAGAGGATGGCTCAGTGCAGAAGGTGGCAGTAAAAGTACTGAAAACTGATATCAACTCTTCAAGTGATATTGAACAGTGTCTGAAAGAGGCTGCCTACATGAAGGATTTCCACCATCCCAATGTCATCCAGCTCATAGGGGTGAGCCTACATAGAAGACCACAGCAGCGATTACCTATCCCTATGGTCATCCTTCCGTTTATGAAACATGGCGACCTGCACACTTTCCTACTCATGTCCCGGCTTGGGGATGACCCTTTTACCCTCTCTCTTCAAATGCTTGTTCAGTTCATGCTGGATGTTGCTCGGGGGATGGAGTATCTTAGCAGCAAAAACATCATTCACAGGGACCTGGCTGCTCGAAACTGCATGTTGAATGAGAGCATGACCGTCTGCGTAGCAGACTTTGGTCTTTCCAAAAAGATCTACAGTGGGGATTATTACAGACAAGGGTCTGTCTCAAAGCTGCCAGTGAAATGGATTGCACTGGAAAGTTTGGCTGACAATGTCTACACAACACAGAGTGATGTGTGGGCTTTTGGTGTGACCATGTGGGAGATTATGGCTCGGGGACAGACACCTTATCCTGGAGTGGAGAACTCTGAGATTTACGAATACCTCATCAAGGGTGAAAGACTTAAACAGCCACCTGACTGCCCAGATGATATTTATGAGATCATGCACAGCTGCTGGTCTCCAGTCCCTAAGTGTCGTCCCAGTTTCCAGCACCTGATAGCACAGTTGGAGAGTCTGTGGGCCGGGCTGTCTCCAGCACCTGCAAAGGAGCCGTTGCTTTATGTAAACTTGGAGGGTGAGGAGGGCGAGCCAGACTCTGGGCTTGGGGCTGGAGCTGGTAGCGTGACCACTGAGGAGCGTTCATGGGGAGTGCCTTGGCAGTGCGTGGGGATGGAGGAGGATGAAAAAGACTGGCTCATGGTGTCGTCAGGGGCTGCACTGGCTATCGGCGGAGACTACCGCTATATTATTGGCCCTTGTGGTGCCATAGATGGAGAAAGCAGACGGTCTGAGGATGGCCTGTCAGAGGATGCaaaggatgaggaggaggataTCATAAATGTGTGAtgtcttttcttatttttttactggaCTAATCACGTGGACTGCTTATGAAGAGCAGGCAGATGTGTGGAAAAAACAACACGAGAGTTCATAATGGATGAATTATGATGGAAAATCTTGATAGACTAGGGGCATTTGTGAGTTAATGCACAACAACATGCTAGGACATGCTAACTACACTGTCCAAGTGGGGCCACATGAATATACAATCACATGTTTATAATACgaagtagggctgcacaatacatCAATTAAGAATCACCATTGCAATTATGACACTAACACAAAAGGAAATACAAACTGTTCTCAAGTTCTATGAAATGCATGATTGTCTATATATCATTAATTTTACCCCAATTTTGAATACAAAAAGTGCCTTATAAATACCACAACACGGTAGATTTTTGACTTCtgggatttttttctttagtatcGTAAGATAATCTCATCTTCATAAAAAAGTTGCATCCAGAAATCAACCGACAGGAATGAAGCTTAGTGGGTAGTTGTGCCACTTGCATCGGGTCATCTTTAGTAACGAGTCCCACTTTAAGTTTAGTGAGATGACCAATAAATCTGTGAACACCCAGAATGCTTAGTGTCATGCTGTGGGCACAATATTGGACAGTGCCAGATCACCTTAGCCCAACATAATGTTAGGAACAACTCTTCAAAATAGTGGAGCGTAAAATTCAGCATCCTGTCCATCCCTTAATTTCCATGTTCCCCATGGGAGctgatccccccccccccacattccaccttaaatgatgccgTCTCTGCTGTCTGTTGTACCATTGAAGGTAGAATggaaatttagctagctagctaggtacaGAGAtgtaacatttttcttttttttatgctttaaagaaaaaaaatggacataAGACACTGGAACTAAACATTAagctatggtaatatagtgtttattgtaattttgCTTCTGCCACCATCTTGTAATTTCTTGTACTCCTGCGTTTGGTGTGTGCCCTCTGTTTGAAGGGCCATATATCCCTAACAATTCCCCCTCAAGCATAAAAATTCTGCAAGCTGTGTGGTATGGATTTGGAACCTTTACAACTCTGAGTTGtctgttacacatgcattacacccTACTGTATGTGTGACTCActaaatatgaccaagagttgTCTATATCAGTCAGAAATTGTTAGCATTTATTGTTCCTACAACCTTATATTCCTTTCAAATAACACTGAAATTCCTTCtaggtgcaactatttttgcaaccATTTCTTTGATGAGTGTACATCATAGTATCAAAATTGCAATGTAAATTTCCCCTAAATATGGTGCAGCCCTAATATGAAGCGGAAGTgttaatttacaatattaacaaatttaaaaaactgaagcaCTGTCGACATTTTGCAAATTAACTGTAGTTTTATTAACTTAAATGTTACTGGAAGCCGTTAAGGTATGTTTTTCAGAAGTCTGCCTTTAGTTTGTCATGAAGGACGTCTGCCGTATTTGTAAATAACAGACAGGCAACTGCATCCTTTTGTGAGATTATTATAGGTCAGCTTCACAAAACCCCTCAGTTCATGTTTTGTCATAGGCACCATATGAACATCATCATCAAGCCCACACAAGAGCATTCCATGCAACAAGGGATATCAAGGGATGTGAATTCTTAATGTGTACAATGCTTATGTTTCTGTGATgttaaacagatcatttttttgcAACCCATACAGTAGAATTTAAGCTTGGATGATGTTTAGGCTTGTGGTGCTTTTGTGAAAAATCTGATTGCTCCTGCTCTGCAAATGAACTCTACAGTTGTTGTAGGTGTACGGTCACTTCTTGACCCAACAATTTATGGGTGTAGAATAAGCAGTTTAACATTTGTGGTTTTGCACATGTGAacatacacatttaaatatgttttgtaaagtatttaacatttaatgatTGAAGGAGATGAGCATGAGCATGTTACAAGTAAAAGAGCAAGTGTAGCAGTATGGTGACTAATCTAAAGTAcaagatagattttttttttaacgattGCATATTGTTACACAGAAATTATGGCATCTAATCTGCAGTAcatgttagaaatgtttttttttttatttgcacacaTGTATTCAGACTAGTGTCATACACAAATCAAACCTAAACCAATTTAGTGTATGAGTGCTGAACAAAACTTGttcatcaaataataaaaatgcagtaaaaatgtAAGATGACATAACATATTATACCCCAGTGTTTGGGTAACATCAGCAATGTACAAAactgtgaaggatttatttgtTCCTGTTGGAGAGTGTATTAAGAGGAGATACAGTATTTCAATACGGTAATATCAGATCTACAGTCCGTGTCATAAGGGAGCCCATTTCAAGTGCTCTTCACCTAATCTGGTACCTTCTAAAGGCCAAATGAATCAGGATACTGTCAACagtcaataaatacaataaaaattcaTTCTGAAATCA

Function

symbol description
tyro3 Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within glomerular filtration and glomerular visceral epithelial cell development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human TYRO3 (TYRO3 protein tyrosine kinase).

NR:

description
PREDICTED: tyrosine-protein kinase receptor TYRO3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
K05116 TYRO3, RSE; TYRO3 protein tyrosine kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251896.3 True 5443 mRNA 0.44 19 23454001 23473086

Neighbor

gene id symbol gene type direction distance location
foxa1 foxa1,LOC106611236 coding upstream 85366 23365431 ~ 23368635 (+)
clec14a NA coding upstream 141635 23309045 ~ 23312366 (+)
sec23a sec23a,LOC107689296,LOC107589610 coding upstream 186139 23250660 ~ 23267862 (+)
srp54 srp54,LOC107729255,LOC107693187,LOC107733904 coding upstream 205152 23242171 ~ 23248849 (+)
npas3 npas3 coding upstream 299416 22857844 ~ 23154585 (+)
LOC103028567 NA coding downstream 2173 23475259 ~ 23498557 (+)
LOC103030470 mapkbp1 coding downstream 32570 23505656 ~ 23549535 (+)
LOC103031726 tbpl2,LOC107729258,LOC107586674,LOC107693101 coding downstream 85966 23559052 ~ 23563050 (+)
atg14 atg14,zgc:113944,LOC106602264,LOC106611244 coding downstream 91040 23564126 ~ 23570689 (+)
LOC103037620 ctbp2a,LOC103037620,LOC108428680,LOC107692786,LOC107589601,LOC107729277,LOC107665110 coding downstream 466824 23939910 ~ 24009312 (+)
G82606 NA non-coding upstream 227091 23225765 ~ 23226910 (+)
G82596 NA non-coding upstream 245202 23208495 ~ 23208799 (+)
G82588 NA non-coding upstream 248557 23204815 ~ 23205444 (+)
G82579 eapp,LOC107733856,LOC107729290 non-coding upstream 259711 23127953 ~ 23194290 (+)
G82748 NA non-coding downstream 118 23473204 ~ 23473455 (+)
G82754 NA non-coding downstream 25633 23498719 ~ 23499013 (+)
G82753 NA non-coding downstream 25950 23499036 ~ 23552919 (+)
G82763 NA non-coding downstream 108062 23581148 ~ 23581751 (+)
G82766 NA non-coding downstream 117414 23590500 ~ 23590893 (+)
G82609 baz1a other upstream 222683 23230430 ~ 23231318 (+)
G82488 NA other upstream 1095866 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 1780563 21520907 ~ 21673438 (+)
G81763 NA other upstream 3780363 19673127 ~ 19673638 (+)
G81761 NA other upstream 3787954 19665736 ~ 19666047 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 402353 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 436596 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 666303 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 1422808 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 1461078 24934164 ~ 24936186 (+)

Expression


Co-expression Network