LOC103031726 (tbpl2,LOC107729258,LOC107586674,LOC107693101)


Basic Information

Item Value
gene id LOC103031726
gene name tbpl2,LOC107729258,LOC107586674,LOC107693101
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23559052 ~ 23563050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251904.3
CCTCTATATACTGGAATAATTGGCCGTAGCTTGTTTAATAGCTGATATTTTTTACCGAGTATAAAATATCAGAATACAATGATGCTAATAGCTAATGAGGGAGCTGGCACGTCTTCTCACGTCACCCCTCTTCACTCCTCACACTTTGCTGCTAATTAATTAGTGAGTCTGCCAAACAGAAGGCCTGTTTCATGGAACTAAAGCCACTAGACCCTAGCTAGTTAGGTCTGACAACGTATTTCCTAGTACTTCTTGGTGTATTCCACAGTATTGTGACAGACTCTGTGGAATATGGACGATGAGGCTTCACTTGAGAGTTATTTTGACCAGTCAATTGCTGGTACATCTGAGTACATGTTTGAAGGGGACCTGGGATTGCAAGGCCCTCCACAGCTGCAGGATCCCTCCTTCCTGGCCTCCTCCATTTCTTCCCAGCAGAAAGATCTTTCAGAGGATCTGGACCTGAGCTTCCTGCCTGATGAGCTCAGTGCCCAGGAGGAGCCACCAGAGAATGTGGGTGTCAGTTCCAACGATGACAGTGGTATATACCAAGACTGTCCACCCTCACAGTTACCAGATGCAGACACAGACCCTAATAAGACCCAGCCTGTGGCCTCCCCCTTTTGCTCCCTCCCAATGACCCCCATGACACCTATGACCCCTGTTGCCCCAGTCACAGAAAGTTCAGGAATCATCCCACAGTTACAGAACATTGTGTCCACAGTAAACCTGGCTTGTCCTCTAGACTTAAAGTCCATTGCTCTTCAGGCTCGAAATGCTGAGTACAATCCCAAGCGTTTTGCTGCTGTTATAATGCGCATCCGTGAGCCCAGAACAACTGCCCTCATCTTCAGCTCTGGAAAGATGGTCTGCACTGGTGCAAAAAGTGAAGAGCAGTCTCGTCTTGCTGCCAGGAAATATGCCAGAGTGGTGCAGAAACTCGGCTTTCCAGCCAAGTTTCTTGACTTCAAGATCCAGAACATGGTGGGCAGTTGTGACGTGTGTTTCCCCATACGGCTGGAGGGCCTAGTTCTGACTCACCAGCAGTTCAGCAGCTATGAACCAGAGTTGTTTCCTGGTTTAATTTACCGCATGGTGAAACCACGTATTGTCTTGCTGATCTTTGTGTCTGGAAAAGTTGTTCTTACAGGTGCAAAAGATCGCTCTGAAATCTATGAAGCTTTTGAGAATATCTACCCAATTCTAAAAGGATTCAGGAAACAGTGAAAAGGAAAGTGTCAAGCAAGGAAAATGTCAAATGTATTGCTTGCCTTGAAAGTAATACTTTGAAACAAGAGAATTTCAAtcaaacattgtgttgaaaattaacattttgttgCTTGTATATGTTTATCAGTGTTGTCAGTTGAGTGCAAATGTTTTTGTTAACATGTATTAGAAAAACTATGAGAAATAACTATAAAGTTGATATTCTGCTATTGAGCTCTGcacattattttatacataaataaaacaaaataaaaaaaaatacatgggaATCCTTTAATAAAGAGCTTAATCCACtggtgtttctgtttgtttgcgTTTTTTGAAACAtagtttaaatctgtttttaaaaaagattcTTAAAATCCATTCaaaccaacaaaacaaacaccagattgaaagtgtgtgtatagtgtagtaatacAGGGCATTCCCAGCTCTGGCGTCCAGCACATGGGATTCAGCATTTTCCATGAGGGTTATAACCTAGGGAAGTCAGAATGGGtgtacacactcattctgacataCTATTGCATCTAAAAAtaacatcactgattgtggaaatgtcacactagacctcaagcagcttggactgtgctTGGAAACTCTGgttccttgatttccaaatgaaatgcaaaatttacggATGGTCAATTATGGTTTGGAGAGCAGtgtaatctgctggtgttggtccactgtcttacatcaagtccaaagtcagtgcagtgttttcctggaaaatcttacagcaaaaga
>XM_022672969.1
CCTCTATATACTGGAATAATTGGCCGTAGCTTGTTTAATAGCTGATATTTTTTACCGAGTATAAAATATCAGAATACAATGATGCTAATAGCTAATGAGGGAGCTGGCACGTCTTCTCACGTCACCCCTCTTCACTCCTCACACTTTGCTGCTAATTAATTAGTGAGTCTGCCAAACAGAAGGCCTGTTTCATGGAACTAAAGCCACTAGACCCTAGCTAGTTAGGTCTGACAACGTATTTCCTAGTACTTCTTGGTGTATTCCACAGTATTGTGACAGACTCTGTGGAATATGGACGATGAGGCTTCACTTGAGAGTTATTTTGACCAGTCAATTGCTGGTACATCTGAGTACATGTTTGAAGGGGACCTGGGATTGCAAGGCCCTCCACAGCTGCAGGATCCCTCCTTCCTGGCCTCCTCCATTTCTTCCCAGCAGAAAGATCTTTCAGAGGATCTGGACCTGAGCTTCCTGCCTGATGAGCTCAGTGCCCAGGAGGAGCCACCAGAGAATGTGGGTGTCAGTTCCAACGATGACAGTGGTATATACCAAGACTGTCCACCCTCACAGTTACCAGATGCAGACACAGACCCTAATAAGACCCAGCCTGTGGCCTCCCCCTTTTGCTCCCTCCCAATGACCCCCATGACACCTATGACCCCTGTTGCCCCAGTCACAGAAAGTTCAGGAATCATCCCACAGTTACAGAACATTGTGTCCACAGTAAACCTGGCTTGTCCTCTAGACTTAAAGTCCATTGCTCTTCAGGCTCGAAATGCTGAGTACAATCCCAAGCGTTTTGCTGCTGTTATAATGCGCATCCGTGAGCCCAGAACAACTGCCCTCATCTTCAGCTCTGGAAAGATGGTCTGCACTGGTGCAAAAAGTGAAGAGCAGTCTCGTCTTGCTGCCAGGAAATATGCCAGAGTGGTGCAGAAACTCGGCTTTCCAGCCAAGTTTCTTGACTTCAAGATCCAGAACATGGTGGGCAGTTGTGACGTGTGTTTCCCCATACGGCTGGAGGGCCTAGTTCTGACTCACCAGCAGTTCAGCAGGTGCAAAAGATCGCTCTGAAATCTATGAAGCTTTTGAGAATATCTACCCAATTCTAAAAGGATTCAGGAAACAGTGAAAAGGAAAGTGTCAAGCAAGGAAAATGTCAAATGTATTGCTTGCCTTGAAAGTAATACTTTGAAACAAGAGAATTTCAAtcaaacattgtgttgaaaattaacattttgttgCTTGTATATGTTTATCAGTGTTGTCAGTTGAGTGCAAATGTTTTTGTTAACATGTATTAGAAAAACTATGAGAAATAACTATAAAGTTGATATTCTGCTATTGAGCTCTGcacattattttatacataaataaaacaaaataaaaaaaaatacatgggaATCCTTTAATAAAGAGCTTAATCCACtggtgtttctgtttgtttgcgTTTTTTGAAACAtagtttaaatctgtttttaaaaaagattcTTAAAATCCATTCaaaccaacaaaacaaacaccagattgaaagtgtgtgtatagtgtagtaatacAGGGCATTCCCAGCTCTGGCGTCCAGCACATGGGATTCAGCATTTTCCATGAGGGTTATAACCTAGGGAAGTCAGAATGGGtgtacacactcattctgacataCTATTGCATCTAAAAAtaacatcactgattgtggaaatgtcacactagacctcaagcagcttggactgtgctTGGAAACTCTGgttccttgatttccaaatgaaatgcaaaatttacggATGGTCAATTATGGTTTGGAGAGCAGtgtaatctgctggtgttggtccactgtcttacatcaagtccaaagtcagtgcagtgttttcctggaaaatcttacagcaaaagacactga

Function

symbol description
tbpl2 Enables DNA binding activity. Contributes to transcription cis-regulatory region binding activity. Involved in embryo development and embryonic pattern specification. Acts upstream of or within DNA-templated transcription, initiation and hemopoiesis. Predicted to be located in nucleus. Is expressed in margin. Orthologous to human TBPL2 (TATA-box binding protein like 2).

NR:

description
TATA box-binding protein-like protein 2 isoform X1

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0010508 positive regulation of autophagy biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251904.3 True 1983 mRNA 0.42 7 23559052 23563044
XM_022672969.1 False 1894 mRNA 0.42 6 23559052 23563050

Neighbor

gene id symbol gene type direction distance location
LOC103030470 mapkbp1 coding upstream 9517 23505656 ~ 23549535 (+)
LOC103028567 NA coding upstream 60495 23475259 ~ 23498557 (+)
tyro3 tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 coding upstream 85966 23454001 ~ 23473086 (+)
foxa1 foxa1,LOC106611236 coding upstream 190417 23365431 ~ 23368635 (+)
clec14a NA coding upstream 246686 23309045 ~ 23312366 (+)
atg14 atg14,zgc:113944,LOC106602264,LOC106611244 coding downstream 1076 23564126 ~ 23570689 (+)
LOC103037620 ctbp2a,LOC103037620,LOC108428680,LOC107692786,LOC107589601,LOC107729277,LOC107665110 coding downstream 376860 23939910 ~ 24009312 (+)
LOC103037301 LOC108428614,LOC108269476 coding downstream 449503 24012553 ~ 24019511 (+)
fzd3 LOC108428681,LOC107729283,LOC108270052,LOC107665105,LOC107589599 coding downstream 460492 24023542 ~ 24046622 (+)
LOC103044752 LOC108428615 coding downstream 542162 24105212 ~ 24110198 (+)
G82753 NA non-coding upstream 6133 23499036 ~ 23552919 (+)
G82754 NA non-coding upstream 60039 23498719 ~ 23499013 (+)
G82748 NA non-coding upstream 85597 23473204 ~ 23473455 (+)
G82606 NA non-coding upstream 332142 23225765 ~ 23226910 (+)
G82596 NA non-coding upstream 350253 23208495 ~ 23208799 (+)
G82763 NA non-coding downstream 18098 23581148 ~ 23581751 (+)
G82766 NA non-coding downstream 27450 23590500 ~ 23590893 (+)
G82768 NA non-coding downstream 33162 23596212 ~ 23596474 (+)
G82785 kiaa0586 non-coding downstream 206475 23769525 ~ 23772117 (+)
G82813 NA non-coding downstream 341810 23904860 ~ 23905395 (+)
G82609 baz1a other upstream 327734 23230430 ~ 23231318 (+)
G82488 NA other upstream 1200917 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 1885614 21520907 ~ 21673438 (+)
G81763 NA other upstream 3885414 19673127 ~ 19673638 (+)
G81761 NA other upstream 3893005 19665736 ~ 19666047 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 312389 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 346632 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 576339 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 1332844 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 1371114 24934164 ~ 24936186 (+)

Expression


Co-expression Network