LOC103037301 (LOC108428614,LOC108269476)


Basic Information

Item Value
gene id LOC103037301
gene name LOC108428614,LOC108269476
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24012553 ~ 24019511 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251925.3
GACCCCACCCACTTCCGCTGTGCAGGTGAGCCGCTCAAACAGGAAACGGCAGGAgcggattttattttctctcctttATCTGAAGAACGTGGGGATGTGTGGGTTTGACAGACAGAAGGGGCCTGGAAGGCTCATGGCTAAAGGACTGACCCTGATTGTTATTGGTCACATCAATTTCATCCTGGGCGCTATCGTCCACGGTAGCATTTTACGTCACATCTCTAAACCAAGCGGCAAGATTTCCACAGAATACACAGTGTCCAACATCATAGCCGTCACCTCCGGCCTGCTGagcATCGCAAGTGGAATTGTTGCAATATTGGTGTCTAGGAATATTACCAACTGGAAACTACACGTAGGTTTGTTGGTGAGTTCCTTCTTGAACACACTGCTTTCTACAGCCTGTTGCGTGGGATTGCTGCTGGCCATCAGCCTCACTATTAAAGCAGACGGCAGTGCACTTATGCAGGGCTGCAACTCCACAGGCATGCCAATTAACGCCCGCTCTCCCATCAACGCCAACTGCCCATTTGACACCACACGCATTTATGACACGACTCTGAGTCTATGGTTCCCCTGCACATTGCTTTCAGCTATGGAGACAGGCCTGTCTGTGTGGTGTTTTATAATAGGTCTTACACTGAGAGGAATTGGGCCATGCGGTCACACCTACCTCAAAGAGCAGCTGGAAGAGGAGGCATTGGCATCCACATCAAAGAGAGACCCAGATTTTGTAGCTCCAAGCCAACGTCTTATTGGACACCATTCTTCTCATgcataaagaagaaaaacagtCAGAAGTCAAGATGATTTGCTGACGCTCTACAGCTCTGAGGTAAAAATGCTGACTGTAGTCAGTTGAAGTCCAGGTTGCATTTCCATGAGCATGTATTAGGCTAGTCCAAGACTGAATTGCATTTCTAATGGTGATCCATCACTGACAGCCCTTTGGTGTTTGGCTTAATATGGATCCAGGAAACTCCTTTTATGTATTTAAGCTGAGACCcagacaacaacaaaaaaactgaactaGAAACAGTTCTCGATAAGAGCAACATTCCTAAATGACTGTTAAGAGTTTTTCAATTGGATAGCGATTAATTATGCTgatatttttatcatttgagttttatactgtattttttttttctgcaatgcTTTGTACTACACTGtgttatatttgtgtatatctgtgtgctgaaaacacaaacaatggCTGTGACTGAAGTGGATCTCTACTCCTTACtcccaatgaaaaacaagtatctttatttttgttgatttttagtcaACAAAATTCCCTTACACTATGTaacaatttcttgatgaatggactaaTAGAAATTATTCAGaattacct
>XM_015606545.2
GACCCCACCCACTTCCGCTGTGCAGGTGAGCCGCTCAAACAGGAAACGGCAGGAgcggattttattttctctcctttATCTGAAGAACGTGGGGATGTGTGGGTTTGACAGACAGAAGGGGCCTGGAAGGCTCATGGCTAAAGGACTGACCCTGATTGTTATTGGTCACATCAATTTCATCCTGGGCGCTATCGTCCACGGTAGCATTTTACGTCACATCTCTAAACCAAGCGGCAAGATTTCCACAGAATACACAGTGTCCAACATCATAGCCGTCACCTCCGGCCTGCTGCACGTAGGTTTGTTGGTGAGTTCCTTCTTGAACACACTGCTTTCTACAGCCTGTTGCGTGGGATTGCTGCTGGCCATCAGCCTCACTATTAAAGCAGACGGCAGTGCACTTATGCAGGGCTGCAACTCCACAGGCATGCCAATTAACGCCCGCTCTCCCATCAACGCCAACTGCCCATTTGACACCACACGCATTTATGACACGACTCTGAGTCTATGGTTCCCCTGCACATTGCTTTCAGCTATGGAGACAGGCCTGTCTGTGTGGTGTTTTATAATAGGTCTTACACTGAGAGGAATTGGGCCATGCGGTCACACCTACCTCAAAGAGCAGCTGGAAGAGGAGGCATTGGCATCCACATCAAAGAGAGACCCAGATTTTGTAGCTCCAAGCCAACGTCTTATTGGACACCATTCTTCTCATgcataaagaagaaaaacagtCAGAAGTCAAGATGATTTGCTGACGCTCTACAGCTCTGAGGTAAAAATGCTGACTGTAGTCAGTTGAAGTCCAGGTTGCATTTCCATGAGCATGTATTAGGCTAGTCCAAGACTGAATTGCATTTCTAATGGTGATCCATCACTGACAGCCCTTTGGTGTTTGGCTTAATATGGATCCAGGAAACTCCTTTTATGTATTTAAGCTGAGACCcagacaacaacaaaaaaactgaactaGAAACAGTTCTCGATAAGAGCAACATTCCTAAATGACTGTTAAGAGTTTTTCAATTGGATAGCGATTAATTATGCTgatatttttatcatttgagttttatactgtattttttttttctgcaatgcTTTGTACTACACTGtgttatatttgtgtatatctgtgtgctgaaaacacaaacaatggCTGTGACTGAAGTGGATCTCTACTCCTTACtcccaatgaaaaacaagtatctttatttttgttgatttttagtcaACAAAATTCCCTTACACTATGTaacaatttcttgatgaatggactaaTAGAAATTATTCAGaattacct
>XM_022672979.1
AGGAAACGGCAGGAgcggattttattttctctcctttATCTGAAGAACGTGGGGATGTGTGGGTTTGACAGAAGGGGCCTGGAAGGCTCATGGCTAAAGGACTGACCCTGATTGTTATTGGTCACATCAATTTCATCCTGGGCGCTATCGTCCACGGTAGCATTTTACGTCACATCTCTAAACCAAGCGGCAAGATTTCCACAGAATACACAGTGTCCAACATCATAGCCGTCACCTCCGGCCTGCTGagcATCGCAAGTGGAATTGTTGCAATATTGGTGTCTAGGAATATTACCAACTGGAAACTACACGTAGGTTTGTTGGTGAGTTCCTTCTTGAACACACTGCTTTCTACAGCCTGTTGCGTGGGATTGCTGCTGGCCATCAGCCTCACTATTAAAGCAGACGGCAGTGCACTTATGCAGGGCTGCAACTCCACAGGCATGCCAATTAACGCCCGCTCTCCCATCAACGCCAACTGCCCATTTGACACCACACGCATTTATGACACGACTCTGAGTCTATGGTTCCCCTGCACATTGCTTTCAGCTATGGAGACAGGCCTGTCTGTGTGGTGTTTTATAATAGGTCTTACACTGAGAGGAATTGGGCCATGCGGTCACACCTACCTCAAAGAGCAGCTGGAAGAGGAGGCATTGGCATCCACATCAAAGAGAGACCCAGATTTTGTAGCTCCAAGCCAACGTCTTATTGGACACCATTCTTCTCATgcataaagaagaaaaacagtCAGAAGTCAAGATGATTTGCTGACGCTCTACAGCTCTGAGGTAAAAATGCTGACTGTAGTCAGTTGAAGTCCAGGTTGCATTTCCATGAGCATGTATTAGGCTAGTCCAAGACTGAATTGCATTTCTAATGGTGATCCATCACTGACAGCCCTTTGGTGTTTGGCTTAATATGGATCCAGGAAACTCCTTTTATGTATTTAAGCTGAGACCcagacaacaacaaaaaaactgaactaGAAACAGTTCTCGATAAGAGCAACATTCCTAAATGACTGTTAAGAGTTTTTCAATTGGATAGCGATTAATTATGCTgatatttttatcatttgagttttatactgtattttttttttctgcaatgcTTTGTACTACACTGtgttatatttgtgtatatctgtgtgctgaaaacacaaacaatggCTGTGACTGAAGTGGATCTCTACTCCTTACtcccaatgaaaaacaagtatctttatttttgttgatttttagtcaACAAAATTCCCTTACACTATGTaacaatttcttgatgaatggactaaTAGAAATTATTCAGaattacct

Function

NR:

description
PREDICTED: keratinocyte-associated protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251925.3 True 1360 mRNA 0.43 7 24012553 24019511
XM_015606545.2 False 1300 mRNA 0.43 6 24012553 24019511
XM_022672979.1 False 1316 mRNA 0.42 7 24012593 24019511

Neighbor

gene id symbol gene type direction distance location
LOC103037620 ctbp2a,LOC103037620,LOC108428680,LOC107692786,LOC107589601,LOC107729277,LOC107665110 coding upstream 3241 23939910 ~ 24009312 (+)
atg14 atg14,zgc:113944,LOC106602264,LOC106611244 coding upstream 441864 23564126 ~ 23570689 (+)
LOC103031726 tbpl2,LOC107729258,LOC107586674,LOC107693101 coding upstream 449503 23559052 ~ 23563050 (+)
LOC103030470 mapkbp1 coding upstream 463018 23505656 ~ 23549535 (+)
LOC103028567 NA coding upstream 513996 23475259 ~ 23498557 (+)
fzd3 LOC108428681,LOC107729283,LOC108270052,LOC107665105,LOC107589599 coding downstream 4031 24023542 ~ 24046622 (+)
LOC103044752 LOC108428615 coding downstream 85701 24105212 ~ 24110198 (+)
ahi1 ahi1 coding downstream 93625 24113136 ~ 24125115 (+)
syne1 syne1 coding downstream 147608 24167119 ~ 24257250 (+)
rmnd1 rmnd1,LOC107586664,LOC107692687 coding downstream 244934 24264445 ~ 24269866 (+)
G82816 NA non-coding upstream 97094 23913129 ~ 23915459 (+)
G82814 NA non-coding upstream 103945 23908338 ~ 23908608 (+)
G82813 NA non-coding upstream 107158 23904860 ~ 23905395 (+)
G82785 kiaa0586 non-coding upstream 240436 23769525 ~ 23772117 (+)
G82768 NA non-coding upstream 416079 23596212 ~ 23596474 (+)
G82838 NA non-coding downstream 117065 24136576 ~ 24138904 (+)
G83064 NA non-coding downstream 295204 24314715 ~ 24314965 (+)
G83071 NA non-coding downstream 329930 24349441 ~ 24350535 (+)
LOC111193226 NA non-coding downstream 337464 24356975 ~ 24367973 (+)
LOC111193227 NA non-coding downstream 552817 24572328 ~ 24576551 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 38578 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 134783 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 781235 23230430 ~ 23231318 (+)
G82488 NA other upstream 1654418 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 2339115 21520907 ~ 21673438 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 119878 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 876383 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 914653 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 1010486 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 1141407 25160918 ~ 25329482 (+)

Expression


Co-expression Network