Item | Value |
---|---|
gene id | LOC103037620 |
gene name | ctbp2a,LOC103037620,LOC108428680,LOC107692786,LOC107589601,LOC107729277,LOC107665110 |
gene type | coding |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035905.1 |
NCBI id | CM008308.1 |
chromosome length | 42966623 |
location | 23939910 ~ 24009312 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
ctbp2a | Predicted to enable NAD binding activity; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; and transcription corepressor activity. Acts upstream of or within camera-type eye development; nervous system development; and regulation of melanocyte differentiation. Predicted to be located in nucleus. Is expressed in nervous system; neural plate; otic vesicle; pectoral fin; and pharyngeal arch. Orthologous to human CTBP2 (C-terminal binding protein 2). |
description |
---|
PREDICTED: ataxin-2 homolog isoform X2 |
id | name | namespace |
---|---|---|
GO:0043010 | camera-type eye development | biological_process |
GO:0060386 | synapse assembly involved in innervation | biological_process |
GO:0070073 | clustering of voltage-gated calcium channels | biological_process |
GO:0055114 | oxidation-reduction process | biological_process |
GO:0045634 | regulation of melanocyte differentiation | biological_process |
GO:0051287 | NAD binding | molecular_function |
GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | molecular_function |
id | description |
---|---|
K04496 | CTBP; C-terminal binding protein |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_007251926.3 | True | 5259 | mRNA | 0.50 | 10 | 23970725 | 24009312 |
XM_007251928.3 | False | 4258 | mRNA | 0.50 | 10 | 23971729 | 24009312 |
XM_007251929.3 | False | 3727 | mRNA | 0.49 | 10 | 23970733 | 24009312 |
XM_007251930.3 | False | 3723 | mRNA | 0.49 | 10 | 23970734 | 24009312 |
XM_007251931.3 | False | 3346 | mRNA | 0.49 | 12 | 23939910 | 24009312 |
XM_007251932.3 | False | 3257 | mRNA | 0.49 | 11 | 23939911 | 24009312 |
XM_007251933.3 | False | 3342 | mRNA | 0.49 | 12 | 23939911 | 24009312 |
XM_007251935.3 | False | 3021 | mRNA | 0.48 | 10 | 23982640 | 24009312 |
XM_007251936.3 | False | 3060 | mRNA | 0.48 | 10 | 23982295 | 24009312 |
XM_007251937.3 | False | 3198 | mRNA | 0.49 | 11 | 23939911 | 24009312 |
XM_022672975.1 | False | 3110 | mRNA | 0.49 | 10 | 23939911 | 24009312 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
atg14 | atg14,zgc:113944,LOC106602264,LOC106611244 | coding | upstream | 369221 | 23564126 ~ 23570689 (+) |
LOC103031726 | tbpl2,LOC107729258,LOC107586674,LOC107693101 | coding | upstream | 376860 | 23559052 ~ 23563050 (+) |
LOC103030470 | mapkbp1 | coding | upstream | 390375 | 23505656 ~ 23549535 (+) |
LOC103028567 | NA | coding | upstream | 441353 | 23475259 ~ 23498557 (+) |
tyro3 | tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 | coding | upstream | 466824 | 23454001 ~ 23473086 (+) |
LOC103037301 | LOC108428614,LOC108269476 | coding | downstream | 3241 | 24012553 ~ 24019511 (+) |
fzd3 | LOC108428681,LOC107729283,LOC108270052,LOC107665105,LOC107589599 | coding | downstream | 14230 | 24023542 ~ 24046622 (+) |
LOC103044752 | LOC108428615 | coding | downstream | 95900 | 24105212 ~ 24110198 (+) |
ahi1 | ahi1 | coding | downstream | 103824 | 24113136 ~ 24125115 (+) |
syne1 | syne1 | coding | downstream | 157807 | 24167119 ~ 24257250 (+) |
G82816 | NA | non-coding | upstream | 24451 | 23913129 ~ 23915459 (+) |
G82814 | NA | non-coding | upstream | 31302 | 23908338 ~ 23908608 (+) |
G82813 | NA | non-coding | upstream | 34515 | 23904860 ~ 23905395 (+) |
G82785 | kiaa0586 | non-coding | upstream | 167793 | 23769525 ~ 23772117 (+) |
G82768 | NA | non-coding | upstream | 343436 | 23596212 ~ 23596474 (+) |
G82838 | NA | non-coding | downstream | 127264 | 24136576 ~ 24138904 (+) |
G83064 | NA | non-coding | downstream | 305403 | 24314715 ~ 24314965 (+) |
G83071 | NA | non-coding | downstream | 340129 | 24349441 ~ 24350535 (+) |
LOC111193226 | NA | non-coding | downstream | 347663 | 24356975 ~ 24367973 (+) |
LOC111193227 | NA | non-coding | downstream | 563016 | 24572328 ~ 24576551 (+) |
timm9 | timm9,LOC107729247,LOC107693171,LOC107689314 | other | upstream | 62140 | 23875439 ~ 23877770 (+) |
G82609 | baz1a | other | upstream | 708592 | 23230430 ~ 23231318 (+) |
G82488 | NA | other | upstream | 1581775 | 22357644 ~ 22358135 (+) |
ralgapa2 | ralgapa2,LOC107687934 | other | upstream | 2266472 | 21520907 ~ 21673438 (+) |
G81763 | NA | other | upstream | 4266272 | 19673127 ~ 19673638 (+) |
G82853 | tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 | other | downstream | 130077 | 24139389 ~ 24142232 (+) |
ephx2 | ephx2,LOC107733988,LOC107692411,LOC107653762 | other | downstream | 886582 | 24895894 ~ 24924815 (+) |
LOC111193228 | NA | other | downstream | 924852 | 24934164 ~ 24936186 (+) |
c9h8orf74 | NA | other | downstream | 1020685 | 25029997 ~ 25034121 (+) |
supt3h | supt3h | other | downstream | 1151606 | 25160918 ~ 25329482 (+) |