LOC103026430 (LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185)


Basic Information

Item Value
gene id LOC103026430
gene name LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24630879 ~ 24635881 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251986.3
TCCTGAATACCAAGATGGCGGCCGGCAGGGCGTCCTTGGTGTCTGTGAGCGTTCGCtttctgtttaataataatattcagataGCAAAGATAGTATCAGCCCCTCAGACTGCCCTCAGCGCTGCCAGGCGAGGATTTGCATCAAGTGTACTGTCTCAGCCCATTGAAGACAGTGTTCCAACAAACATTCCTAGCCGTTCTTTTAGCGGCCCTTTAGAACATTACAACAATCTAATCCAGAGTGGATTATTACAAGAGGACCAGCAACAAAGAGCTGTTCTGCAAGAATTAGATCTTATGCAGAAGAAACTCAAAGGATACAACAACCATCCCgagtcttttttttccaaaCTATTTTCTAAACAGAAACCACCAAAAGGCGTCTATATTTATGGGGATGTAGGCACTGGTAAAACTATGGTGATGGACATGTTTTACAGTCATGTGGAGATGTCGAATAAAAAGAGGGTCCACTTTCATGGATTTATGATAGATGTACACAAAAGGATTCATCGCCTAAAACAGAGCTTGCCCAAGAGAAAGGCAGGGAAAATGGCAAAAGCCTATGATCCTATTGCACCAGTTGCAGAGGAAATCAGCGAGGAGGCTTCCTTGCTATGCTTTGATGAATTTCAGGTCACAGACATTGCAGATGCCATGATTCTCAAGCAGCTCTTCGAAAACCTCTTTCTCCATGGTGTTGTAGTTGTCGCCACATCCAACAGACCTCCAGATGATTTGTACAAGAATGGATTACAGAGGGTGAACTTTGTGCCGTTCATAGCTGTGCTTAAGaaCTATTGCCGAACACTTCGTCTAGACTCTGGAATAGATTATCGCAAAAGAAATCGGCCTGCAGCGGGGAAACTCTTCTACCATTCCAGTGAGGATAATGTACAGGCAACACTGGACAAGCTCTTTGACGAATTGGCATTCAAACAGAATGATATAACCCGACCCAGACCTCTGAAGGTGCATGGTAGGACACTAACACTGAACAAAGCATGTGGGACCATTGCAGACTGCACTTTTGAGGAGCTGTGTGATAGGCCTTTAGGAGCCAGCGACTACTTAGAAATGTCCACAGTGTTTGACACAGTGTTTATTCGAAACATACCTCTACTGACTTTGAATAAGAAGACCCAGGCCAGGCGCTTCATCACACTTATTGATGCATTTTATGATCATAAGGTGCGCGTGGTGTTGGAGGCTGAGGCACCACTAGAGGAGCTGTTTGTAAATGAGGGACACCACGAGGATGAGAGCCACATCTTAATCGATGACCTGGGCTTAAAAAGGGATTCGGCAAGTTCACTATCAATCTTCACAGGAGAGGAAGAAGTGTTTGCTTTTCAGAGGACAGTGTCTCGCCTCACAGAGATGCAGACAGAAGAGTACTGGGTGGAAGGTGATCGGAGCTCTTCATAGCACACTCCAATACAGACTGAATATTTCAGTGGATGCCTCTTATCAGAACACTATGAACAATATTTTAATCAAAACTTTACACTGCTCTGCTGCACTTTATATTTTGGACATCTTTCTTAAAAGGAATGTGGGCTATAAACATGAGTATATTAATGGACTGTATTTCATTAATGGAACTAAAGAAGGGTCTTGCCAGAGACTTGCctttaagaatatatttattactttatcaTCTCTACTTACTCTAGTATATTCCATATACAGTGTTAAGTCAAGGTACAGGTGCAGAAaaggtttaaattatttttactcaTTGCTTGACTTTTTATCCACaggttataatttattttattacataaatgGGACAAAACTCCTTTCTGTAGCTGTTTAGCAGACAtgaattttctgtatttaaatgACGCACAAATGCAGAAGAggtattttaagcatttaatattttaagcatcCAGCATTTGTCTTGGATTTTGATTTGATCATTTTGTGGCTTTATGTGCCAAATTGGTTAATTTCCGTTTTATCTTATGACCATTTCCAGACTGAAGGCTGGTTTTCTGATGGTGCCTTTTAGACTGATGTATGCAAATGACCTTTGTTATGTTTGGCTGCCCTGTGTTGTGTCTTATTTTGAAAAAACAATTAGAGCTGGAAAGGTGTTAAACAAGTGGTTATGTTTTGTCGGAAATAAACTTAAGCCACTTGTCTCTTGA
>XR_002650359.1
TCCTGAATACCAAGATGGCGGCCGGCAGGGCGTCCTTGGTGTCTGTGAGCGTTCGCtttctgtttaataataatattcagataGCAAAGATAGTATCAGCCCCTCAGACTGCCCTCAGCGCTGCCAGGCGAGGATTTGCATCAAGTGTACTGTCTCAGCCCATTGAAGACAGTGTTCCAACAAACATTCCTAGCCGTTCTTTTAGCGGCCCTTTAGAACATTACAACAATCTAATCCAGAGTGGATTATTACAAGAGGACCAGCAACAAAGAGCTGTTCTGCAAGAATTAGATCTTATGCAGAAGAAACTCAAAGGATACAACAACCATCCCgagtcttttttttccaaaCTATTTTCTAAACAGAAACCACCAAAAGGCGTCTATATTTATGGGGATGTAGGCACTGGTAAAACTATGGTGATGGACATGTTTTACAGTCATGTGGAGATGTCGAATAAAAAGAGGGTCCACTTTCATGGATTTATGATAGATGTACACAAAAGGATTCATCGCCTAAAACAGAGCTTGCCCAAGAGAAAGGCAGGGAAAATGGCAAAAGCCTATGATCCTATTGCACCAGTTGCAGAGGAAATCAGCGAGGAGGCTTCCTTGCTATGCTTTGATGAATTTCAGGTCACAGACATTGCAGATGCCATGATTCTCAAGCAGCTCTTCGAAAACCTCTTTCTCCATGGTGTTGTAGTTGTCGCCACATCCAACAGACCTCCAGATGATTTGTACAAGAATGGATTACAGAGGGTGAACTTTGTGCCGTTCATAGCTGTGCTTAAGaaCTATTGCCGAACACTTCGTCTAGACTCTGGAATAGATTATCGCAAAAGAAATCGGCCTGCAGCGGGGAAACTCTTCTACCATTCCAGTGAGGATAATGTACAGGCAACACTGGACAAGCTCTTTGACGAATTGGCATTCAAACAGAATGATATAACCCGACCCAGACCTCTGAAGGTGCATGGTAGGACACTAACACTGAACAAAGCATGTGGGACCATTGCAGACTGCACTTTTGAGGAGCTGTGTGATAGGCCTTTAGGAGCCAGCGACTACTTAGAAATGTCCACAGTGTTTGACACAGTGTTTATTCGAAACATACCTCTACTGACTTTGAATAAGAAGACCCAGGCCAGGCGCTTCATCACACTTATTGATGCATTTTATGATCATAAGGTGCGCGTGGTGTTGGAGGCTGAGGCACCACTAGAGGAGCTGTTTGTAAATGAGGGACACCACGAGGATGAGAGCCACATCTTAATCGATGACCTGGGCTTAAAAAGGGATTCGGCAAGTTCACTATCAATCTTCACAGGAGAGGAAGAAGTGTTTGCTTTTCAGAGGACAGTGTCTCGCCTCACAGAGATGCAGACAGAAGAGTACTGGGTGGAAGGTGATCGGAGCTCTTCATAGCACACTCCAATACAGACTGAATATTTCAGTGGATGCCTCTTATCAGAACACTATGAACAATATTTTAATCAAAACTTTACACTGCTCTGCTGCACTTTATATTTTGGACATCTTTCTTAAAAGGAATGAAAGAAGGGTCTTGCCAGAGACTTGCctttaagaatatatttattactttatcaTCTCTACTTACTCTAGTATATTCCATATACAGTGTTAAGTCAAGGTACAGGTGCAGAAaaggtttaaattatttttactcaTTGCTTGACTTTTTATCCACaggttataatttattttattacataaatgGGACAAAACTCCTTTCTGTAGCTGTTTAGCAGACAtgaattttctgtatttaaatgACGCACAAATGCAGAAGAggtattttaagcatttaatattttaagcatcCAGCATTTGTCTTGGATTTTGATTTGATCATTTTGTGGCTTTATGTGCCAAATTGGTTAATTTCCGTTTTATCTTATGACCATTTCCAGACTGAAGGCTGGTTTTCTGATGGTGCCTTTTAGACTGATGTATGCAAATGACCTTTGTTATGTTTGGCTGCCCTGTGTTGTGTCTTATTTTGAAAAAACAATTAGAGCTGGAAAGGTGTTAAACAAGTGGTTATGTTTTGTCGGAAATAAACTTAAGCCACTTGTCTCTTGA

Function

NR:

description
PREDICTED: lactation elevated protein 1-like

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K18798 AFG1, LACE1; peroxisome-assembly ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251986.3 True 2155 mRNA 0.41 13 24630879 24635881
XR_002650359.1 False 2105 misc_RNA 0.41 14 24630879 24635881

Neighbor

gene id symbol gene type direction distance location
LOC103026113 LOC108428705 coding downstream 1324 24620659 ~ 24629555 (-)
LOC103045658 NA coding downstream 48028 24576207 ~ 24582851 (-)
LOC103024550 LOC108428701 coding downstream 56104 24560563 ~ 24574775 (-)
shprh shprh coding downstream 249274 24364845 ~ 24381605 (-)
LOC103047192 LOC103047192,LOC107586623,LOC108270369,LOC107734133,LOC108428697,LOC105418861 coding downstream 266908 24356570 ~ 24363971 (-)
LOC103026721 smc6,LOC108428709 coding upstream 18840 24654721 ~ 24669978 (-)
LOC103028568 NA coding upstream 48449 24684330 ~ 24698963 (-)
LOC103028045 NA coding upstream 64031 24699912 ~ 24712425 (-)
LOC103029498 LOC108428715,LOC108270176 coding upstream 79243 24715124 ~ 24726398 (-)
LOC103030890 si:dkey-36g24.3,LOC108428718,LOC108270043,LOC106607835 coding upstream 112173 24748054 ~ 24758220 (-)
G83059 LOC103045657,LOC108428691 non-coding downstream 355789 24271440 ~ 24275090 (-)
G82971 ctbp2a,LOC103037620,LOC103387658 non-coding downstream 624053 23939918 ~ 24006826 (-)
G82935 NA non-coding downstream 920474 23642620 ~ 23710405 (-)
LOC111193220 NA non-coding downstream 961987 23608681 ~ 23668892 (-)
G82929 NA non-coding downstream 1034061 23596212 ~ 23596818 (-)
G83254 dnajc5gb,LOC108428719,LOC108270045 non-coding upstream 100823 24736704 ~ 24740999 (-)
G83236 NA non-coding upstream 128015 24763896 ~ 24764321 (-)
G83259 fuca2 non-coding upstream 130054 24765935 ~ 24771043 (-)
G83260 NA non-coding upstream 136001 24771882 ~ 24772742 (-)
G83271 NA non-coding upstream 165446 24801327 ~ 24857856 (-)
cunh6orf183 zbtb24 other downstream 14263 24588941 ~ 24616616 (-)
G82991 LOC108428614,LOC108269476,LOC107734364,LOC107693224,LOC107589682 other downstream 613223 24012634 ~ 24017656 (-)
kiaa0586 NA other downstream 756478 23713376 ~ 23874401 (-)
sptssa sptssa other downstream 1441790 23110883 ~ 23189089 (-)
tex36 NA other downstream 2006170 22622354 ~ 22624709 (-)
LOC103040243 tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441 other upstream 398123 25034004 ~ 25041054 (-)
G83612 NA other upstream 1356618 25992499 ~ 26003685 (-)
cga cga other upstream 1798591 26434472 ~ 26470163 (-)
LOC103043566 LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757 other upstream 3194747 27830628 ~ 27848444 (-)
G84215 NA other upstream 3708708 28344589 ~ 28356545 (-)

Expression


Co-expression Network