LOC103027217 (vsnl1b,LOC103027217,LOC107102224,LOC105895729,LOC103379314)


Basic Information

Item Value
gene id LOC103027217
gene name vsnl1b,LOC103027217,LOC107102224,LOC105895729,LOC103379314
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24643690 ~ 24656092 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251989.3
GAGCCGCGAGAAGGAGACGTGCGTGTACCGTGTGCGCAAACTCCATCGAGCCAGAGCTGCAGCACGAGTccgagaggagaggagaggaggagagccATCTCCGAGGAGCTGGAGAGGAGAGCCATCTCCCAGGAGCTGCCTGAAAAAACGAGAAACCAGGAGAGGAGGCGCACCGACACTCACACACTGCTAAAGCGTTGAGCGAGGGGGCATCTGGGGGCTTTAGCTTTGCGTGCTTTCTGCCAGGCTCCTCCTGACCGTGCTTCTTCTTCATTCAGCACCGACGCTCGCTCACCCTCTCTCTGCTCATCTTCAGCAGCCTCTCCCAAACTCCGGCGAGATCATGGGGAAACAGAACAGCAAGCTTACCCCTGAGGTGATGGAGGACCTGGTGAAGAACACAGAGTTTAATGAACATGAGCTCAAGCAGTGGTACAAGGGGTTTCTGAAAGATTGCCCCAGCGGTAAGCTAAACTTGGACGAATTCCAGCAACTGTATGTCAAGTTCTTCCCTTATGGTGATGCATCAAAGTTTGCACAGCATGCCTTCAGAACCTTTGACAAGAACGGGGACGGCACCATTGACTTCAGGGAGTTCATTTGTGCTCTGTCCATCACATCACGGGGAAGCTTTGAGCAAAAGCTTAACTGGGCCTTCAACATGTATGACCTAGATGGGGATGGAAAAATCACTCGAGTAGAGATGCTGGAAATTATAGAGgcTATCTACAAAATGGTCGGCACTGTGATCATGATGAAGATGAACGAGGACGGGCTGACACCAGAGCAGAGGGTGGATCGGATCTTTAGCAAGATGGATAAGAACAACGACGACCAAATCACGCTGGACGAGTTCAAGGAAGCGGCGAAGAGCGACCCATCTATCGTACTGCTTTTGCAGTGTGACATGCAGAAGTGAGGGTATGCATGCCAGCATGCTCCGGACTGAGTatgttataatgttttattcatgttcAGCCAGTTCCACAAGattaacacaaaatatatttggaCTACTCAGATGAACTTGCTTCTTGTGGTTGAAAAACTAGTATGCATGGAATGTCAAATGCTAAGAGTTAagaatatacatttaatttcaaaCCTGCAACAACGTAAGGTGTGCAAAATAAGTCAGAATTGTTTTCATTCTTCCATCTATTGTTAGTCAGTGAAGTGCTCCACAGTAGGCTATTTCATTTATAGCTACGATACTTAAAGTTCATATTTACCACTATAGCTGCTGTATTTCGTACGGTGGTTCAGGTATTAAAAGCAAAATGTCACACTAAATGTAACGGTTTCTATTAAAACAGTATGTTTCAACTTTGATCTTAAACAGCAAGGAGGGTAGAGGGGTTCATTTAGCCTACCTCCCAAAATGTGCTTGTACTTGATTATAAATGTAAGTTATTTGCATGCATGTCCTAAGTGTAAAGCCTAATCGCTCCTATCTCTTCTTTTGGCAACCTTGGCAAATAATATAAGGAGGCCTTATAAACGATAACAGTAACTACTAAATACTAATGATGTGTGAGATTTACATTTGTGATTCACCCGCCCATTAGATATCTTTCCTTGGGTGCATGTTCTCtcccaaaaaagaaaacaaaaaaggaataaaaaactTACAGTGTGTATTTGTAGAAGCTATCTGTAAGGGACAACAATATGTCGTGGATCTCGTCTCTGGACAAATTTAGCCTTTATTTATTCTCTGCAGTGACAAAGGTAAGAACACCTGGGTCATTGATTTGTTTAGGACTGTTGCAGTTGTAAGCCGAGAAGTCAGACTGGATCACAGGTTTTTCCCAACAAATTACACACTGCCAAACCACTCActccctttttaaaattatttacgTATGAATCATATCACAGCGTGCATGTATGGATGCTTGTAGATTTGGTTAACTCGATTCATTCTGAAAAGGCAATTTATCATGTCCTTGCTTTCCTCGGAGGGCTTTAATAACACCCCTCCACCTCGTAATCAAGAAGCAATCCGCTACAAATGTGTTTGGTATACAACCTCAGTCTAAATGTGATAAGTTTTTATTgaactgttttttgtaaaatcttTCTACACGAGTCCGTGACATTTAAATAACCACTGtttatacagtaatttaatGCATCTTTAATGGCAAATGATGGGGTTTTGGAAGAGCTTTGAGCCACAACTTATTTTAACCACTTGAAGCAAACATGTTGTTACTCACGACATACACTCTTAATAAAGAGCAGGGGGATCCTGGTTAGAGGATTCCATCTCGAAGAACGTGTGCATCCAATCAGGATTTAGAGAACTCTTCAGTAATGGGTATAACTATTCCATCAATTACACATATATGGGATGAATCTATCTTTTTTAAAGGAGGGTTCTCCAACAAGGACAAACTAAAGAACCCCAAAACAGagttctttttgtttgttttattattaagagtgtATAATATAAAGAGATATTCTCTTCATTTTGTGTTCACCCAATTAGAAAAATGCCCTAAATTCTTGTTCTCCACATAAAAACTAATGCATCAAGCCCATGCAAGTTCGATAAGGCTCAGGATGCtgcactttcttttttctccaaaGCCCTCCTTGTAGAAAGTTATCATGTGTTTGTAAAATCCCAAAAACTGCAGATGTATATCTTTGCCATGTAAATATTTGTACCTAACATGGAAATGAAATACCAAATTTAAAGAACAAGTCATTTGATTGTGTAATatgatgtttgtgttttatttgtggCATGTCTTCAACTCAGTATGTAACGTTGCACTGACAACATTGTGATTCAAATCAATAAACTGTCTATGGGCTGTTTTCAGAA

Function

symbol description
vsnl1b Predicted to enable calcium ion binding activity. Is expressed in central nervous system; cranial ganglion; and retinal ganglion cell layer. Orthologous to human VSNL1 (visinin like 1).

NR:

description
visinin-like protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19936 VSNL1; visinin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251989.3 True 2839 mRNA 0.41 4 24643690 24656092

Neighbor

gene id symbol gene type direction distance location
LOC103025610 zbtb24 coding upstream 53239 24576890 ~ 24590451 (+)
LOC103024245 LOC108428599,LOC107594136,LOC107693148,LOC107552018 coding upstream 82991 24551942 ~ 24560699 (+)
LOC103022677 LOC108428699 coding upstream 92206 24460574 ~ 24551484 (+)
LOC103021971 stxbp5,LOC108428698 coding upstream 184791 24418009 ~ 24458899 (+)
LOC111193225 NA coding upstream 236657 24403690 ~ 24407033 (+)
LOC111188244 NA coding downstream 14530 24670622 ~ 24673463 (+)
LOC103027511 NA coding downstream 17348 24673440 ~ 24679240 (+)
ankrd66 ankrd66 coding downstream 26094 24682186 ~ 24685860 (+)
LOC103029186 cenpo,LOC103029186 coding downstream 70126 24726218 ~ 24730018 (+)
tp53i3 tp53i3 coding downstream 76085 24732177 ~ 24736377 (+)
G83123 NA non-coding upstream 1035 24642392 ~ 24642655 (+)
G83121 NA non-coding upstream 6808 24636606 ~ 24636882 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding upstream 8492 24630873 ~ 24635198 (+)
G83116 NA non-coding upstream 23753 24619695 ~ 24619937 (+)
LOC111193227 NA non-coding upstream 67139 24572328 ~ 24576551 (+)
G83167 NA non-coding downstream 115790 24771882 ~ 24772793 (+)
G83180 NA non-coding downstream 182438 24838530 ~ 24840128 (+)
G83295 NA non-coding downstream 237151 24893243 ~ 24893639 (+)
G83307 NA non-coding downstream 275827 24931919 ~ 24932539 (+)
G83354 NA non-coding downstream 471868 25127960 ~ 25187909 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 501458 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 669715 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 765920 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1412372 23230430 ~ 23231318 (+)
G82488 NA other upstream 2285555 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 239802 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 278072 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 373905 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 504826 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1263465 25919557 ~ 25975283 (+)

Expression


Co-expression Network