LOC103029186 (cenpo,LOC103029186)


Basic Information

Item Value
gene id LOC103029186
gene name cenpo,LOC103029186
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24726218 ~ 24730018 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251994.3
aggaggagagaaaagcTCCACCATGCTGCAGCTTCACAATCCACACGCTCAGCCTGATGGTCTGATTCACTGTTCTTTATCGCGACCGTCATTCTGACAGACCCCCGGCTCTGTTTCTCTACATGTTTACCGTGGTTCACACGAGCGCAGTGACCTGCAGCTCTGcccaataaatcacatttaaacGCGTTTATACCGCACGCGCTTTCTGCAGCGCCTCTGCGCAAACCGCGCTCAGGGCTGATGTCCTCCGCGGCGATGTTTACATCTGACGTCGCTCTGACCTCACGTCCGTGTTATCGCGAGCTGCGGAGACCGCGGAAAAGACAGAAAGCGCCGGATTTGAACGGAGCGGAGTCACTGATCAGAAACTAAAATGGACATAGTGAGAAAACAAGGTGTCTTTGATCACCTTATGGTGTTAGAGAAGGCCGGAACAACAGGCcaagaaaagcaaaaacaagaCCGTTTGGATGAGCTTCGTTCTACAATAGTAACACTCCGTGCAAAAAGAGACCGACTTAGTGCTGAAACCGCAGCATTAAAGAGTCTACAAAACAAACTTGACCAAGGCCAGCCACTGGAAGTTGATGAGGCTGATGACTTAATGCAACTTGATCAATTTCTGCTTAAGTCCAGGCTAATGCAGCTGAAGGACCTTCAAACGGCCTATCACCTTattggtggtTATAATCTGATTGAGAATAAACAAGGCAAAAGTATATGTGTCTCATTTTGCACTGCTTATGGGGACATGTACTTGGAAACCTTTAATTTGGAAATGGACCTTAGACGTACAGTGCAAATCAGTCGTCATAACATCCCTCCATGTATTCCATTAGACAAACTCGCCAAGGAGAATCTACAGACTGATTTTAAAGCCTTCCTTGAAACGCTAAGCCTGCATCTCAATGCTTTAGCTGGACGCAAGCAGCAGATTTCACTCATTAAGgaaCTTGTTGGGACAGTAGAGGTTATTGAGAAAAATCAACTCTGCAACTTTCTCGTCCTCATGTGCAAAGCACAAGAGAGTGAAGCAGCCATTCTGTGCACGCTGGAGTACAGTGATCTCACCAAGTGTTTGCCGACTCGTGTTACTATCCAGAGCAAAGATACAACCCTTGCTGAATCTCCACAATGGAAGAAAAACCAAGCGTTGCTTATGGAGTCTCCAGTACACATTGCACTTTTGACATTAAGGAAAATGGGAAGCATTGTGTGAATAAAGaagctatatatattttttaaatgcttaagtcttttaaaaaaggttttaaacatATTGATATTTAGCCCCATTTCCTGCAGCATGCCTATTAGTAATACCAGCATAAACTAAACACTTTATGGATTACATACCAGCATTCATGTGTAAAATAGAAGGAGAGCAGACAGATCCTGTATTAAATTCTATACACATATTTTCAAA

Function

symbol description
cenpo Predicted to act upstream of or within centromere complex assembly. Predicted to be located in kinetochore and nucleus. Predicted to be part of Mis6-Sim4 complex. Orthologous to human CENPO (centromere protein O).

NR:

description
centromere protein O-like

GO: NA

KEGG:

id description
K11507 CENPO; centromere protein O

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251994.3 True 1429 mRNA 0.44 6 24726218 24730018

Neighbor

gene id symbol gene type direction distance location
ankrd66 ankrd66 coding upstream 40358 24682186 ~ 24685860 (+)
LOC103027511 NA coding upstream 46978 24673440 ~ 24679240 (+)
LOC111188244 NA coding upstream 52755 24670622 ~ 24673463 (+)
LOC103027217 vsnl1b,LOC103027217,LOC107102224,LOC105895729,LOC103379314 coding upstream 70126 24643690 ~ 24656092 (+)
LOC103025610 zbtb24 coding upstream 135767 24576890 ~ 24590451 (+)
tp53i3 tp53i3 coding downstream 2159 24732177 ~ 24736377 (+)
LOC103030357 LOC108270045 coding downstream 6995 24737013 ~ 24742797 (+)
LOC103045971 NA coding downstream 12951 24742969 ~ 24747805 (+)
fuca2 fuca2 coding downstream 35963 24765981 ~ 24771053 (+)
LOC103032669 NA coding downstream 42788 24772806 ~ 24793331 (+)
G83123 NA non-coding upstream 83563 24642392 ~ 24642655 (+)
G83121 NA non-coding upstream 89336 24636606 ~ 24636882 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding upstream 91020 24630873 ~ 24635198 (+)
G83116 NA non-coding upstream 106281 24619695 ~ 24619937 (+)
LOC111193227 NA non-coding upstream 149667 24572328 ~ 24576551 (+)
G83167 NA non-coding downstream 41864 24771882 ~ 24772793 (+)
G83180 NA non-coding downstream 108512 24838530 ~ 24840128 (+)
G83295 NA non-coding downstream 163225 24893243 ~ 24893639 (+)
G83307 NA non-coding downstream 201901 24931919 ~ 24932539 (+)
G83354 NA non-coding downstream 397942 25127960 ~ 25187909 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 583986 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 752243 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 848448 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1494900 23230430 ~ 23231318 (+)
G82488 NA other upstream 2368083 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 165876 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 204146 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 299979 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 430900 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1189539 25919557 ~ 25975283 (+)

Expression


Co-expression Network