LOC103033209 (LOC105895699,LOC103033209,LOC102290137,LOC103363062,LOC105017734,LOC107377943,LOC108428727,LOC102203632,LOC101464058,LOC101076210,LOC106571413)


Basic Information

Item Value
gene id LOC103033209
gene name LOC105895699,LOC103033209,LOC102290137,LOC103363062,LOC105017734,LOC107377943,LOC108428727,LOC102203632,LOC101464058,LOC101076210,LOC106571413
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24794749 ~ 24797199 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252010.3
GTTGCCATTTTTACCTACACAGCATTAGCTTCAGCGTGAAAAGACCTTTTGATGAAGCATGGTTCAcccctctctctgggtgggatgCTTTCACAGTGTGGATGTGTGCTTGCGTGGTTGTGCCGGTGGCCTCTGAAGCCAGAACAATAGACTTATCTACCACTTCTATACCAGACCACGGATGAGCATGGCAGCTCCACTCATGGAACCTTAAACTTTCACTGAGTGACAGGCGTTGGAAAAAGAACGCATTGTGAACTTTGATTTGGATTATACATTTTTCTGATGTATTATGGAGATCTTAAGCTGAATGGGGCGACCAAATAATTCTCCACCTGGACTCGGGCTGCTCCGGCCGCcgactgtgattggtcagttCCACACCCTGTTCTTTGGGTCCGTGCGTATGTTTTTCCTGGGGGTTCTGGGATTTGCAGTTTACGGCAATGAGGCCCTCCACTTTAGCTGTGATCCTGACAGAAGGGAACTGAACCTATTTTGTTACAACCAGTTTCGACCGATAACACCTCAGGTATTTTGGGCCTTACAGCTTGTGACTGTTCTGGTACCAGGGGCTGTGTTCCATCTCTATGCAGCATGTAAAAACATAGACCAGGAGGATATTCTTGAGAAACCTATCTACACAGTCTTTTACATCATCTCTGTTCTTTTGCGAATCGTCCTGGAGGTGGCAGCATTTTGGCTGCAGAGTCATCTCTTTGGCTTTCTGGTTCACCCTCTGTACTTCTGTGACGCCAGCTCACTGGAAAAGGCCTTCAACTTCACTAAGTGTATGGTCCCAGAGCATTTTGAAAAGACTATCTTTCTCAGTGCCATGTACTTATTCACCATCATCACTGTGGTTTTGTGTATTGCGGAGATTTTCGAAATCCTCGGTAGAAGGTTGGGCTACTTGAGCAACCAATGACACCTTCTGACCATCTTgtaaaatgttatgtaaaatgtCTTAGGGGgttcttttattttcatattttaatgatCGTTAAACATCCATCCAGCTGTTCCTCTGTAATTTCATATAAAGCATATTGAGCATTTAATCTCAGGTAGAATGGAATGTGACTGTGAAATGTACTTAACTTGAGTCTTTATTTAGTTACAAAATATTAACAAGCACTAATATAGTTTTAGCTTCTAATAATTAGTTGCTAATATAGCaactaatatactaatatagtTGCTATTGGTCCTTTGTGTGATGAAGAACCACTTTTTGCTCTAAAACTTTTttatgctaataaaaaaaaaaatctctaaatgCAAACATAATTTACCACGTTTACCAAGTCTCTGTAacataaattgttttttatggaaccaaaagagGTATACTCTTTTGTTCTGACAGACATCTATGTCCTTCTGATCTATAATGTCATGGAATTTTGCTTTTCCATACTGTTACAGGAGCACGTCttcatattaaacatttttaaaccagTGT
>XM_022673017.1
TTTAGCTAATGTGTAGCTGCTGAATTTATGTTTTGGTATcagatgatttatttatttatttattcttatttatgtttgttattatTTAGTATGAACAGAGCTATGTATACAGTATCTGAGTGAagttctgattaaaaaaaattggaaaaggAAATCAaatcttttacagttttacagttattagcctaaaatatattctttccTCAAATGTGTTGTAGATTGGCTGTCTATTTTCAGCCATCGTGCACAGTGTGGTGCAAaggggctgttttttttttctttttgctgacAGTGTTGAATGGGGATTATGTGTAGACCACATGTCCAGCCCTTTTGTTGAACctttttgttgtctttttgtACCTCGTGAGTAAATCGATGTAGGTACTAAAGTTGAAAGGGAAATATGCATTGACAGGGGCTTTTCTCCAAAGCAAAGGTCACCCAGAGCAGCAGAGTTTTAGTCTGGTCTGTACAGAAGCCACAGGTTGGCAATGAGGGCCAAGCACCACAGCGTAGTTGAACCTATAGAGCCAAGCCATGTCATTAAACTACATAAAGAACTTCTATGAGGGATTTCTCCGGCCGCcgactgtgattggtcagttCCACACCCTGTTCTTTGGGTCCGTGCGTATGTTTTTCCTGGGGGTTCTGGGATTTGCAGTTTACGGCAATGAGGCCCTCCACTTTAGCTGTGATCCTGACAGAAGGGAACTGAACCTATTTTGTTACAACCAGTTTCGACCGATAACACCTCAGGTATTTTGGGCCTTACAGCTTGTGACTGTTCTGGTACCAGGGGCTGTGTTCCATCTCTATGCAGCATGTAAAAACATAGACCAGGAGGATATTCTTGAGAAACCTATCTACACAGTCTTTTACATCATCTCTGTTCTTTTGCGAATCGTCCTGGAGGTGGCAGCATTTTGGCTGCAGAGTCATCTCTTTGGCTTTCTGGTTCACCCTCTGTACTTCTGTGACGCCAGCTCACTGGAAAAGGCCTTCAACTTCACTAAGTGTATGGTCCCAGAGCATTTTGAAAAGACTATCTTTCTCAGTGCCATGTACTTATTCACCATCATCACTGTGGTTTTGTGTATTGCGGAGATTTTCGAAATCCTCGGTAGAAGGTTGGGCTACTTGAGCAACCAATGACACCTTCTGACCATCTTgtaaaatgttatgtaaaatgtCTTAGGGGgttcttttattttcatattttaatgatCGTTAAACATCCATCCAGCTGTTCCTCTGTAATTTCATATAAAGCATATTGAGCATTTAATCTCAGGTAGAATGGAATGTGACTGTGAAATGTACTTAACTTGAGTCTTTATTTAGTTACAAAATATTAACAAGCACTAATATAGTTTTAGCTTCTAATAATTAGTTGCTAATATAGCaactaatatactaatatagtTGCTATTGGTCCTTTGTGTGATGAAGAACCACTTTTTGCTCTAAAACTTTTttatgctaataaaaaaaaaaatctctaaatgCAAACATAATTTACCACGTTTACCAAGTCTCTGTAacataaattgttttttatggaaccaaaagagGTATACTCTTTTGTTCTGACAGACATCTATGTCCTTCTGATCTATAATGTCATGGAATTTTGCTTTTCCATACTGTTACAGGAGCACGTCttcatattaaacatttttaaaccagTGT

Function

NR:

description
PREDICTED: gap junction epsilon-1 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22039 GJE1, CX23; gap junction epsilon-1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252010.3 False 1465 mRNA 0.40 3 24794749 24797199
XM_022673017.1 True 1695 mRNA 0.38 3 24794749 24796831

Neighbor

gene id symbol gene type direction distance location
LOC103031209 tatdn3,LOC108428722,LOC107733563 coding downstream 32000 24759382 ~ 24762749 (-)
LOC103030890 si:dkey-36g24.3,LOC108428718,LOC108270043,LOC106607835 coding downstream 36529 24748054 ~ 24758220 (-)
LOC103029498 LOC108428715,LOC108270176 coding downstream 68351 24715124 ~ 24726398 (-)
LOC103028045 NA coding downstream 82324 24699912 ~ 24712425 (-)
LOC103028568 NA coding downstream 95786 24684330 ~ 24698963 (-)
LOC103035756 dus23,dusp23,LOC103035756,LOC108428728 coding upstream 28966 24826165 ~ 24828725 (-)
LOC103035024 NA coding upstream 33761 24830960 ~ 24846017 (-)
LOC103037621 LOC103037621,LOC108428732,LOC108270140,LOC107734000,LOC107717228,LOC107692934,LOC107552030,LOC107594120 coding upstream 85706 24882905 ~ 24891194 (-)
LOC107197685 LOC108441730,LOC108270472,LOC107653800,LOC107717246,LOC107594140,LOC107552087,LOC107734306 coding upstream 142839 24940038 ~ 24954966 (-)
LOC103038485 LOC108441717 coding upstream 163535 24960734 ~ 24966932 (-)
G83260 NA non-coding downstream 22007 24771882 ~ 24772742 (-)
G83259 fuca2 non-coding downstream 23706 24765935 ~ 24771043 (-)
G83236 NA non-coding downstream 30428 24763896 ~ 24764321 (-)
G83254 dnajc5gb,LOC108428719,LOC108270045 non-coding downstream 53750 24736704 ~ 24740999 (-)
G83059 LOC103045657,LOC108428691 non-coding downstream 519659 24271440 ~ 24275090 (-)
G83271 NA non-coding upstream 4128 24801327 ~ 24857856 (-)
G83279 NA non-coding upstream 16148 24813347 ~ 24813809 (-)
G83291 NA non-coding upstream 77057 24874256 ~ 24875186 (-)
G83294 NA non-coding upstream 85508 24882707 ~ 24882844 (-)
G83300 NA non-coding upstream 98697 24895896 ~ 24896616 (-)
LOC103026430 LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185 other downstream 158868 24630879 ~ 24635881 (-)
cunh6orf183 zbtb24 other downstream 178133 24588941 ~ 24616616 (-)
G82991 LOC108428614,LOC108269476,LOC107734364,LOC107693224,LOC107589682 other downstream 777093 24012634 ~ 24017656 (-)
kiaa0586 NA other downstream 920348 23713376 ~ 23874401 (-)
sptssa sptssa other downstream 1605660 23110883 ~ 23189089 (-)
LOC103040243 tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441 other upstream 236805 25034004 ~ 25041054 (-)
G83612 NA other upstream 1195300 25992499 ~ 26003685 (-)
cga cga other upstream 1637273 26434472 ~ 26470163 (-)
LOC103043566 LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757 other upstream 3033429 27830628 ~ 27848444 (-)
G84215 NA other upstream 3547390 28344589 ~ 28356545 (-)

Expression


Co-expression Network