LOC103033951 (LOC108428726)


Basic Information

Item Value
gene id LOC103033951
gene name LOC108428726
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24807926 ~ 24813809 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252011.3
CTTTCAACTCACCCGCTTCCTTCAGACATGCCCACGACTCAGAGACCCCAGTTCACCGAGCGCCACTTCAGTGTAGACCCAGCGGCTTTCAGCAGAGCTGTGAGAGCGCCACACCTGCCATGGAGCTTTGCCATACTCTTTTCATATAAGGCGCCCCCGTCCTGCCGTGACTTAAATGGACTTTGAATCAATCTCTAACTTCAAGTGTTAACACCTGACACTGCAAACAGTATCCTCTGTCTCTTCATTAACGAAATGGTAAACTTTGATGAGCTTCTTCATTATGTTGGGGACTTTGGGCCCTACCAGAAAAGGATAGCTTTTTTAGGATCTTTACccattttattatttgcatatGTGCTAGTTGGAGTTGTGTTTATTGGAAATACACCAGATCACTGGTGCAAAATTGCGGGCGCTGCACGTGTTCGAGAGGATTGTGGAACCTCTGTGGAGGAGATCTGGAACCTCACTGTTCCTTACACTGGTCCACATGGCTCTCACAGTAGGTGTGATAGGTTTGATTTGGTCTGGAACTTTAGCACGGCGAACTGCAGTGACCTGGGACTGGGGTCCATACCCACCAATACCACACCACTGACTTCCTGTGATGAGGGATGGACGTTTGATCTGACTTGGACTACCGTTGTAACAGAGtttgtgttggtgtgtgatCGTTCCTGGCTTGCTGATTTGAACCAGGCAACCTTAGCTGCTGGGTTTTTCATAGGAGCCTTTGTCTCTGGATACATAGCTGACAGGTTTGGAAGAAAGTTATGCTTCATTGGCTCAATGCTCGGCCTCGGAGTGTCAGGGATATGCCTCATCATTTCGCCTAATTATCCCTTGTTCCTGGTCTTTAGATGTTTGCAGGGTTTTTTTGCAAAAGGAGCATGGACAACCACATATGTGCTGGTTATTGAATTCTTTGGATCAAACAACAGGAAATTTGTTTCAGTCATGACCCGTACCCTGTACTCTACTGGTATGGTTCTCATTCCTGGCCTAGCTTATTACATCCATTCTTGGAAATATCTCCAACTGACCATGACGCTCCCGATCTTTATCTTTCTGGTCTATTACTGGGCTATTCCTGAATCTCCCAGATGGCTGCTGTCACAAAAGAGGACGAAAGAGGCCATGATTGTTATCCAGAACATTGCAAAGTGCAATAAAAGATCCGTTCCTGCAGACTTTCAAGAGATGGATCTACTTGTGGAACAACAGCAGGAAATTGTTCATCCATCTTTTAAAGATTTGTTCAGAACACCTAAAATGAGGAAACACACCATCATCTTGATTTATGCATGGTTTACAAGTACAGTAGTATTTCAAGGATTATTACTACGTCTAGGGATCACAGGCGATAATCTGTTTTTGGATTTCTTCATCTCAGCCGTGGTGGAACTGCCTACTGGTCTCATATTTTATCTGTTGGTGGACAGAGTGGGCAGGCGTCCTCTTATAGCAACTGCAAATTTAGTTGCAGGACTTGCTTGCTTGATTGTGCCTTTTGTTACACAGaACATCTCCTGGCTGAGGAGAATCATCGCAATAATAGGAAGACTTGCTGTTGCCATTGGATTTGAAACAGTCAATTTTGCCAACTCAGAGCTTTATCCCACTCCCTTAAGAAATCTGGGTGTGTCCGTCTGCTCCTCAGCCAGTGATATCGGAGCAGTGGCAGCACCGTTTCTTCTCTACAGATTAGCCAGTATTTGGCAAGAGCTGCCCCTCTTTCTGTATGGTGTTATGTCTCTGGTATATAGTGGACTGGTTACAATGTTGCCAGAAATGAAAGGTGTTGATCTTCCTGAGACCATAGATGATGTGGAGAACAGAGGaaaagaagacactaaaaagaaaaaCCTAGCAATGAAATATAATCCTGGTGATGGAAGTATGTGAGAATCTGTGAAAGCTGGTATTGTGTGATTATTACATCACATAGTACGCAAAAATGTGCTATACGattatatatttcataattCATTAGAATTATAGAGCTTTGGAGCTACAGGTACCTTTTTTTACAAACCATCTGATTGcaagcctaaaaaaaaa

Function

NR:

description
PREDICTED: solute carrier family 22 member 3-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K08368 yaaU; MFS transporter, putative metabolite transport protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252011.3 True 2064 mRNA 0.44 12 24807926 24813809

Neighbor

gene id symbol gene type direction distance location
LOC103034484 LOC107576683 coding upstream 2541 24799032 ~ 24805385 (+)
LOC103032669 NA coding upstream 14595 24772806 ~ 24793331 (+)
fuca2 fuca2 coding upstream 36873 24765981 ~ 24771053 (+)
LOC103045971 NA coding upstream 60121 24742969 ~ 24747805 (+)
LOC103030357 LOC108270045 coding upstream 65129 24737013 ~ 24742797 (+)
LOC103046279 NA coding downstream 1101 24814910 ~ 24826100 (+)
trnal-cag_10 NA coding downstream 13865 24827674 ~ 24827756 (+)
ptk2b LOC108428731,LOC108270138 coding downstream 35767 24849576 ~ 24882752 (+)
gckr gckr coding downstream 167567 24981376 ~ 24997874 (+)
LOC103039108 NA coding downstream 184526 24998335 ~ 25008777 (+)
G83167 NA non-coding upstream 35133 24771882 ~ 24772793 (+)
G83123 NA non-coding upstream 165271 24642392 ~ 24642655 (+)
G83121 NA non-coding upstream 171044 24636606 ~ 24636882 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding upstream 172728 24630873 ~ 24635198 (+)
G83116 NA non-coding upstream 187989 24619695 ~ 24619937 (+)
G83180 NA non-coding downstream 24721 24838530 ~ 24840128 (+)
G83295 NA non-coding downstream 79434 24893243 ~ 24893639 (+)
G83307 NA non-coding downstream 118110 24931919 ~ 24932539 (+)
G83354 NA non-coding downstream 314151 25127960 ~ 25187909 (+)
G83438 cdc5l,LOC107594083,LOC107552094 non-coding downstream 547918 25361727 ~ 25367281 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 665694 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 833951 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 930156 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1576608 23230430 ~ 23231318 (+)
G82488 NA other upstream 2449791 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 82085 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 120355 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 216188 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 347109 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1105748 25919557 ~ 25975283 (+)

Expression


Co-expression Network