LOC103034484 (LOC107576683)


Basic Information

Item Value
gene id LOC103034484
gene name LOC107576683
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24799032 ~ 24805385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252013.3
AATGGACCCCCCAACCAGATTATTTTGAGGTCTGCCCATCACAGCTGCTGTTTTTTGCAGGAGCAGCCACACAGAGCCCCTCTTCACTCCTCGTCTGTCTTCTTCAGTAGTGCTGTCgTAGTATTTTCTAAGAATGGAGAGTTGCAGCCAACCTGTAGATCTACAGGCCCCTAAGAGTGACCTCACTGAAGACCTGAGTAAACAATTAGAGGATATCATCAACACCTTTCAGGACACAGAGAAGCCGCCTGAGACTGAAGAGCCAGAGGAGGAGCCACTCACAGAAATAAAAGAGCCTGGCAAGGCCAAGGATCAGAAGCTCGAAAAGAAAATGCTTAAAGGCCTTGGCAAGGAGGCCACACTTCTGATGCAAAGCCTGAACAAGCTTGGTTCCCCAGAGGTGAAACTGGAAGCCCTCATCAAGAAGCATGCAGAGTTGCTGGAAGAGCATCGCTCAGACCACAAACAGTTGAAGATGCTACAGAAGAAACTGCTGCAGGTGATGAAGGAGAAAGACCAGCTTCAGAGTGAGCACAGCAGAGCAGTACTGGCCCGCAGTAAACTCGAGGGGCTTTGCAGGGAACTGCAGAGACACAACAAGACCCTCAAGGAGGAGACCCTTCAAAGATGTCGTGAAGATGACCTGAAAAGGAAGGAGATCACCACTCACTTCCAGAACACCCTTACAGACATCCAGGTCCAGATTGAGGAGCACAGCAATCGCAACAACAAACTGTGCCAGGAGAACAGTGACCTAGCTGAGAAACTCAAAGGCCTCATTTCCAAATATGACCAGCGAGAGGCGAATCTTGAAAAAGTGTTTAAGCACAGAGACCTACAGCAGAAGCTGTTGGAGACAAAACTTGCTCAGGCAAATGTGATAATAAAGGATGCGGAAGAGAAGCACAAGTTGGAGAAAGCGCATTTGCTAAAGGAAGCTGCTGAGGCCAAACTTCAAGTGACACTAATGAAGGAACAAGAGATGGACATGAAGGCCCAGCTTGCTATGTATTCTGAGAAGTTTGACGAATTCAAAGGAACTGTGTCAAAGAGCAGTGGTGTGTATGCCAGCTTCAAGCAAGACATAGATAAAATGtcaaagaagatgaagaagctGGAGAAAGAGGCCAATGGATGGAAATCACGATTTGAAGCATGCAATAAATCTCTTGTTGAAATGGTTGCAGACAAAGTGTTGAAGGAGAAAGAATTTGAGCTCTTCACACTCAAAAACCAAAACCTGGAGAAGCTTTGCAGGGCATTGCAGGACGAGAGGAAAAATCTTTATCAGAAGCTTCAGCAAAACCAGCTGCCTGGAACTGAATCTGACAACCTGGACCTTCAGGAGCCCTTAGGGGGCAGTGATGGAAGTTTGGAGGCCCAGAAACctaaagcagaagaagaaaccAAAAATGTGGGGGCAGAGGAAACAAAAGTGGTCCATTCAGATCCAAACACCCCTAAAGAAGTGCTAAATTACCCTCCTAAAGTTGCAACCCCCCTTACCAAAAAGCTGAATAATCTGAAGGCAGAAAAGGCCAGACTTGAAGAGATAGCGACATCTTTTAACATCTCTAACGTACCTGAACAGCCTGCTCTGCTTGCAGAGGCCTGCAGCGTTTCTGAACACTCTGAGACCACAGACTCTGTGCAGGGGCCTGAGGACCCTACAGAGGCCATCGATGATCTCGCTGATCTGGAGTCTCAGCTCAATGAAGCGCTCAGCCTCTCTACAGAAGCATGGTGTGATGAAAATCAAGAAACCAGAGACAAAGAAATGGAGACAGTTGACTGAATATATTGAAtgtcaataaaatgttttacacaaca
>XM_007252014.3
ACCAGATTATTTTGAGGTCTGCCCATCACAGCTGCTGTTTTTTGCAGGAGCAGCCACACAGAGCCCCTCTTCACTCCTCGTCTGTCTTCTTCAGTAGTGCTGTCgTATTTTCTAAGAATGGAGAGTTGCAGCCAACCTGTAGATCTACAGGCCCCTAAGAGTGACCTCACTGAAGACCTGAGTAAACAATTAGAGGATATCATCAACACCTTTCAGGACACAGAGAAGCCGCCTGAGACTGAAGAGCCAGAGGAGGAGCCACTCACAGAAATAAAAGAGCCTGGCAAGGCCAAGGATCAGAAGCTCGAAAAGAAAATGCTTAAAGGCCTTGGCAAGGAGGCCACACTTCTGATGCAAAGCCTGAACAAGCTTGGTTCCCCAGAGGTGAAACTGGAAGCCCTCATCAAGAAGCATGCAGAGTTGCTGGAAGAGCATCGCTCAGACCACAAACAGTTGAAGATGCTACAGAAGAAACTGCTGCAGGTGATGAAGGAGAAAGACCAGCTTCAGAGTGAGCACAGCAGAGCAGTACTGGCCCGCAGTAAACTCGAGGGGCTTTGCAGGGAACTGCAGAGACACAACAAGACCCTCAAGGAGGAGACCCTTCAAAGATGTCGTGAAGATGACCTGAAAAGGAAGGAGATCACCACTCACTTCCAGAACACCCTTACAGACATCCAGGTCCAGATTGAGGAGCACAGCAATCGCAACAACAAACTGTGCCAGGAGAACAGTGACCTAGCTGAGAAACTCAAAGGCCTCATTTCCAAATATGACCAGCGAGAGGCGAATCTTGAAAAAGTGTTTAAGCACAGAGACCTACAGCAGAAGCTGTTGGAGACAAAACTTGCTCAGGCAAATGTGATAATAAAGGATGCGGAAGAGAAGCACAAGTTGGAGAAAGCGCATTTGCTAAAGGAAGCTGCTGAGGCCAAACTTCAAGTGACACTAATGAAGGAACAAGAGATGGACATGAAGGCCCAGCTTGCTATGTATTCTGAGAAGTTTGACGAATTCAAAGGAACTGTGTCAAAGAGCAGTGGTGTGTATGCCAGCTTCAAGCAAGACATAGATAAAATGtcaaagaagatgaagaagctGGAGAAAGAGGCCAATGGATGGAAATCACGATTTGAAGCATGCAATAAATCTCTTGTTGAAATGGTTGCAGACAAAGTGTTGAAGGAGAAAGAATTTGAGCTCTTCACACTCAAAAACCAAAACCTGGAGAAGCTTTGCAGGGCATTGCAGGACGAGAGGAAAAATCTTTATCAGAAGCTTCAGCAAAACCAGCTGCCTGGAACTGAATCTGACAACCTGGACCTTCAGGAGCCCTTAGGGGGCAGTGATGGAAGTTTGGAGGCCCAGAAACctaaagcagaagaagaaaccAAAAATGTGGGGGCAGAGGAAACAAAAGTGGTCCATTCAGATCCAAACACCCCTAAAGAAGTGCTAAATTACCCTCCTAAAGTTGCAACCCCCCTTACCAAAAAGCTGAATAATCTGAAGGCAGAAAAGGCCAGACTTGAAGAGATAGCGACATCTTTTAACATCTCTAACGTACCTGAACAGCCTGCTCTGCTTGCAGAGGCCTGCAGCGTTTCTGAACACTCTGAGACCACAGACTCTGTGCAGGGGCCTGAGGACCCTACAGAGGCCATCGATGATCTCGCTGATCTGGAGTCTCAGCTCAATGAAGCGCTCAGCCTCTCTACAGAAGCATGGTGTGATGAAAATCAAGAAACCAGAGACAAAGAAATGGAGACAGTTGACTGAATATATTGAAtgtcaataaaatgttttacacaaca

Function

NR:

description
PREDICTED: beta-taxilin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252013.3 True 1830 mRNA 0.47 10 24799032 24805385
XM_007252014.3 False 1814 mRNA 0.47 10 24799045 24805385

Neighbor

gene id symbol gene type direction distance location
LOC103032669 NA coding upstream 5701 24772806 ~ 24793331 (+)
fuca2 fuca2 coding upstream 27979 24765981 ~ 24771053 (+)
LOC103045971 NA coding upstream 51227 24742969 ~ 24747805 (+)
LOC103030357 LOC108270045 coding upstream 56235 24737013 ~ 24742797 (+)
tp53i3 tp53i3 coding upstream 62655 24732177 ~ 24736377 (+)
LOC103033951 LOC108428726 coding downstream 2541 24807926 ~ 24813809 (+)
LOC103046279 NA coding downstream 9525 24814910 ~ 24826100 (+)
trnal-cag_10 NA coding downstream 22289 24827674 ~ 24827756 (+)
ptk2b LOC108428731,LOC108270138 coding downstream 44191 24849576 ~ 24882752 (+)
gckr gckr coding downstream 175991 24981376 ~ 24997874 (+)
G83167 NA non-coding upstream 26239 24771882 ~ 24772793 (+)
G83123 NA non-coding upstream 156377 24642392 ~ 24642655 (+)
G83121 NA non-coding upstream 162150 24636606 ~ 24636882 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding upstream 163834 24630873 ~ 24635198 (+)
G83116 NA non-coding upstream 179095 24619695 ~ 24619937 (+)
G83180 NA non-coding downstream 33145 24838530 ~ 24840128 (+)
G83295 NA non-coding downstream 87858 24893243 ~ 24893639 (+)
G83307 NA non-coding downstream 126534 24931919 ~ 24932539 (+)
G83354 NA non-coding downstream 322575 25127960 ~ 25187909 (+)
G83438 cdc5l,LOC107594083,LOC107552094 non-coding downstream 556342 25361727 ~ 25367281 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 656800 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 825057 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 921262 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1567714 23230430 ~ 23231318 (+)
G82488 NA other upstream 2440897 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 90509 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 128779 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 224612 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 355533 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1114172 25919557 ~ 25975283 (+)

Expression


Co-expression Network