clic5 (clic5,LOC105909474,LOC103355727)


Basic Information

Item Value
gene id clic5
gene name clic5,LOC105909474,LOC103355727
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25098039 ~ 25109750 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252040.3
CCTGAATGTGACAGTGTGAGCGTGCTCCCCCTGACAGCTGCACACTGGGCCCAAATCAAAACAAGCCTGCacctcagacacacacacacttgttgcAGTACTGGATCCATCACTGCTGCCAGCTGGGAGGACAGCAAGGTGGGTGTGGAGGAGCTTATGGGCCAAACAAGATCTTTATATCTATATCAAACAGGAACTCAACTAGAGCATCATCAAAGCCAGAGTGGAGGAAACTTCAGCCCAGTCTGAAACAGAATGGGGGAGGATAAGGATCCAGACATTGAGTTGTTTGTGAAGGCGGGCAGCGATGGGGAGAGCATTGGGAACTGTCCGTTCTCTCAGAGGCTCTTCATGATCCTGTGGCTGAAGGGGGTGGTGTTCAATGTCACTACAGTAGATCTCAAAAGAAAACCAGCTGATCTTCATAATCTGGCTCCTGGAACGCACCCACCTTTCCTCACCTTCAATGGAGAAGTACAGACCGATGTCAACAAGATCGAGGAGTACCTAGAGGAGATGCTAGCACCTCCAAAGTACCCCAAACTCTCTGCAAAAAACAGGGAGTCCAACACAGCAGGAAACGACATCTTCTCTAAGTTCTCTGCATACGTTAAGAACACACAGCCTGAAGCTAACGCCAGTCTTGAGAATGGTCTGCTGAAAGCTCTGAGGAAACTAGACAACTATCTCAACACTCCTCTGCCTGAGGAGATTGATGCAGACAGCATGGAAGAGGAGAAGTGCTCAACCCGCAAATACCTGGACAGCAATGAGTTAACACTGGCAGACTGCAACCTCCTTCCTAAACTACATGTTGTCAAGGTTGTTTCCAAGAAATACCGTAATTTTGACATCCCGTCGGAATACACAGGGGTGAGGCGCTACCTACAGAATGCTTACGCACGAGACGAGTTCATCAACACGTGTGCTGCAGACAAGGAGATAGAACTGGCCTATCAGGACGTAGCCAGGAGACTGACCAAGTGACCCATCAAGTGACCCCAAAATCAACCATCCTGTTTCACGTATGCACTTATTTCCACAGACGAATCTACAGTAAGACTGCTCAGCACTGGAAAGCAGGGGTTCGGTTTATAGATTCACTCTTCTGTCTGGAGGAATTTTAAACGTATCTTCTTTATTGTGTGTGTTGCCTTCAGGACACCATATTGGATTGGTCCTTTAATCGCCCTAGATAGACTGTTGCCTGGTTCTAATGCTGCCTGTGTACACTTTGCATGCTGTTGCCATTTTATTCCCCTGGTGCAAGTGGCATGAATTCGTCTTATCAGCAACTCTGTAATGGGCTTGAGATTACACTGTGCCACTGAAATTGTTTGTTTAAAGTCTTGTGTTTTTTCCTGAACTGCATTTTGTTTCAGAGTATATTTCTTTTTGCTGCTTTTCTACTGTCTGTTCTCCTGTCTGTACACAGTCATATATCACCAGTGTTGAATCATACAGTGTTCTCCAGTGTCCACGTCAGGCATGCACATGTAAACTGGGCTTAactgattgtttgtttgtttttttattattttttcccagttAATTCTGTTCTCAAATCATGTCTTCAAATCACAGATGGATTATAGATTACAGTTCTGCCGCTTGATCCTGCCTTTTTCCAGTTATGGTTTCTTAACCTGGGATATgagaatgtatttaatttaatgtgtatGTAGCCTGAATCTCATCTAATTTCTGCATTAATATGCTTAACTGCAGTTGCTGGACAGTATTGGATTTTTTAAACTGAACTTAACCTGAGATAAACTGTGAAAACCACACAGTGATTAATCCACATTGCCTTTATGGAAATGCCTAAAGAAAGTGTGTACACAACCAAACAGAGCCATCTAGTGGAGAAACATTGCAAAATGTACATCCCAATGTGAATATATAATTATGTAACTTTTCATCAGTCATGTAATATCCAGTCAGATTATTCACTGCACATTCAGTAATAAGTTATCTTTTATTATGGGTATTATAACAGCAATCATTCATGTCTAAACATGTcctacattttctttcaaacaaTTGAAAGAAATGTGGGCACACATGGAACTGTGTTctgatatttataatataatattttgtaacTAGCCCTTTCTGGAATTGGgggaatattttaaatatggaaAGACTCTGTTTTTTGGTAAACCAGTAAAAGAAACTGAGATTTCTGagattttttactattttgtctGAAATGTGaatggacatttttttaaacacgtgtttaaaaaatatatatttgagatTTTAAGATGCAGTCTatatcacaataaaatatttgacCGGTAATTACAGTACAATACTGTAGATcctttaatacaattttaataattagATTAGATGTTTTTTACACATGTCTTCTACATGTCACATGTGCACTGAGTGCACAGactgtatagatttttttaattcaaactgTTTGCAGATTTGCAGAGTTGGCCAAAACATTTGAACggacatataatatatatatatatatataaaaaagaaaatagatgttctATGCAAttaactttatactttatatatgttAATAGAGTAAGCACATAAACCTGAGAATCAgactttaataaagaaaatactaaataaataataataataataatataataataataataataataataataaagaaaatatatgagATTAAAATGTACCCCCAATTCTAGAATGACCTAGAACTGTACATGTACAAACCTGTCCCGAATTCTGGATGGTTCTCAGGTATTTCTGGACCTATGTGAAACCTGTATGTGTTTGAATTGACTCTTCatctaatgtaaaataaatctattttttgaaTGCT

Function

symbol description
clic5 Predicted to enable chloride channel activity and voltage-gated ion channel activity. Involved in chloride transport and sensory perception of sound. Located in Golgi apparatus and actin cytoskeleton. Implicated in autosomal recessive nonsyndromic deafness 103.

NR:

description
PREDICTED: chloride intracellular channel protein 5

GO:

id name namespace
GO:0006821 chloride transport biological_process
GO:0016020 membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05025 CLIC5; chloride intracellular channel protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252040.3 True 2830 mRNA 0.38 6 25098039 25109750

Neighbor

gene id symbol gene type direction distance location
enpp4 enpp4 coding upstream 2896 25087603 ~ 25095143 (+)
xkr6 xkr6,xkr6a,LOC108269486,LOC107693112 coding upstream 26934 25045713 ~ 25071105 (+)
LOC103039108 NA coding upstream 89262 24998335 ~ 25008777 (+)
gckr gckr coding upstream 100165 24981376 ~ 24997874 (+)
ptk2b LOC108428731,LOC108270138 coding upstream 215287 24849576 ~ 24882752 (+)
mcm8 mcm8,LOC107594086,LOC107678783 coding downstream 557949 25667699 ~ 25683838 (+)
crls1 crls1,LOC107663140,LOC107738554,LOC107678734,LOC103476593 coding downstream 575055 25684805 ~ 25690894 (+)
gdf3 gdf3 coding downstream 605308 25715058 ~ 25717446 (+)
LOC103021856 bmp2,LOC108414145,LOC108270435 coding downstream 608724 25718474 ~ 25724909 (+)
LOC103033987 plcb1,LOC103033987,LOC108423552,LOC107663155,LOC107678738 coding downstream 725390 25835140 ~ 25916844 (+)
G83307 NA non-coding upstream 165500 24931919 ~ 24932539 (+)
G83295 NA non-coding upstream 204400 24893243 ~ 24893639 (+)
G83180 NA non-coding upstream 257911 24838530 ~ 24840128 (+)
G83167 NA non-coding upstream 325246 24771882 ~ 24772793 (+)
G83123 NA non-coding upstream 455384 24642392 ~ 24642655 (+)
G83354 NA non-coding downstream 18210 25127960 ~ 25187909 (+)
G83438 cdc5l,LOC107594083,LOC107552094 non-coding downstream 251977 25361727 ~ 25367281 (+)
G83440 cdc5l,LOC106599718 non-coding downstream 260501 25370251 ~ 25387590 (+)
G83441 NA non-coding downstream 268821 25378571 ~ 25379291 (+)
G83446 NA non-coding downstream 354150 25463900 ~ 25464253 (+)
c9h8orf74 NA other upstream 63918 25029997 ~ 25034121 (+)
LOC111193228 NA other upstream 161853 24934164 ~ 24936186 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other upstream 173224 24895894 ~ 24924815 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 955807 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 1124064 23909682 ~ 23973975 (+)
supt3h supt3h other downstream 51168 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 809807 25919557 ~ 25975283 (+)
G83602 NA other downstream 1125748 26235498 ~ 26253602 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other downstream 1165251 26275001 ~ 26305383 (+)
LOC103031022 LOC103031022,LOC108423548 other downstream 1211435 26321185 ~ 26327338 (+)

Expression


Co-expression Network