LOC103044752 (LOC108428615)


Basic Information

Item Value
gene id LOC103044752
gene name LOC108428615
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24105212 ~ 24110198 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252050.2
CAACAGAGAGAAAATGTATATTAGAATTTGATGAACAGGCCTTATAGTGCAGTTaacagagaaacacaaaaaGTAATGAGCCACAATTAGTGGCTCTAATGTGTCGTGCCTTTGAAGTGTCTCTCCTCTTTTGGGTTGCCACCCACTTATGGCTGTAGCCTCGTCTAGACGTGATGCAGGGGATACAGCTGTATATAATGGGGAAGGCTCACTCAGCTTCAGTCACTTCCACAGTAGTGAGTGAGCTTGCAGCACTGTCAAACATGGCTCTCCTCATGCACATGTTTCTGTTTGCTGTAGTTATTTCCACAGCACAGGGTTGGGAAACTGATGGCATGAAAGAAGCAATTCTCCAAAAACTTGGTCTAACAGAGTTCCCTAGGATTGAGAAGAGGGATTTGGAAAACCTGGTCATCCCGACTTACGTCAAGAACAAGTATGTATCCATGCTGAAGAAACACAACAAGAGAAGGCGACGATCTCTACCAAGTCTGGCCGGAATTCTCAGAAGCAGCCATGCTGGCATAGacATACCTGGAGAAATGAAGTACTCTGACAGAACCCGCCAGCACTTTGTATTTGACATGGAATCCAGGCTGCAGGAAAACAGCGAGGTCACCATGGCAGAGCTTAGACTTTACCAGACAGCTCCACTACATCAGCTCACAtctgagaaaaagaaacagaggcCTGTCAATAATGCCCGAGTGAGCATTTACTGGGTGGGAGGCAAGAGCGATGGATCCAATCAAACAGCACTGATAGACTCAAGGTTGGTGCCGCTACATGAGGCTGGCTGGAGGAACTTTGACGTGACACAAGCTGTACATTACTGGTCAAAGTCCCAAAAGAAATCTCCAATGCATTTGGAAGTTTGGATTGAGGGAGAGAGGCCTGGCAAACATGCAGCTGAAATGGCAAAAAGAGTGCGCTTCACCACACAACACAATCCGGAAAACACCCTCACCAAAAGTGCTGGGACACCTGAGCTTGTTTTATACACGCTAAATTTGGAAGAATATGGGTCTCCAGGAGACTGCAGACAGGGCGCAGACAATGTGATGTGCTGTCGGGAGGAGCACTACATAGACTTCAGGGAGCTAACCTGGACGCAATACTGGATCATTGAGCCTGCTGGATACCAAGCCTTTCAATGCCAAGGAGGGTGCAAGCAGCCCAAGCGCAGTTACGGCTACGGGCAGAGAACCTGCAGGGTTGCACAGACAGCACCACTGCCAGTCATGTACCTGGTGAAGAAAGGAGAGCACACAGCAATCGAGGTGGCTGAATTCCCAAACATGATTGTTGAAAAGTGTGGATGCTCCATGGACAAACTCTTTACGGCTTAAGATACGGCAACACTCGACAGTTCACCCAAGCACTTAAAAGActttatgtatattataatcTTGAAatgctgttaatttgtttttctctataaaatgttatatgtgTGATTcacttatatttttttaaaaataaagcaatttattttcaaa
>XM_022672493.1
tttaaatgcaataaatgaaTACAGCCAACGTGTATGGAATCAGTCTTCGCGTTATTTCCACAGCACAGGGTTGGGAAACTGATGGCATGAAAGAAGCAATTCTCCAAAAACTTGGTCTAACAGAGTTCCCTAGGATTGAGAAGAGGGATTTGGAAAACCTGGTCATCCCGACTTACGTCAAGAACAAGTATGTATCCATGCTGAAGAAACACAACAAGAGAAGGCGACGATCTCTACCAAGTCTGGCCGGAATTCTCAGAAGCAGCCATGCTGGCATAGacATACCTGGAGAAATGAAGTACTCTGACAGAACCCGCCAGCACTTTGTATTTGACATGGAATCCAGGCTGCAGGAAAACAGCGAGGTCACCATGGCAGAGCTTAGACTTTACCAGACAGCTCCACTACATCAGCTCACAtctgagaaaaagaaacagaggcCTGTCAATAATGCCCGAGTGAGCATTTACTGGGTGGGAGGCAAGAGCGATGGATCCAATCAAACAGCACTGATAGACTCAAGGTTGGTGCCGCTACATGAGGCTGGCTGGAGGAACTTTGACGTGACACAAGCTGTACATTACTGGTCAAAGTCCCAAAAGAAATCTCCAATGCATTTGGAAGTTTGGATTGAGGGAGAGAGGCCTGGCAAACATGCAGCTGAAATGGCAAAAAGAGTGCGCTTCACCACACAACACAATCCGGAAAACACCCTCACCAAAAGTGCTGGGACACCTGAGCTTGTTTTATACACGCTAAATTTGGAAGAATATGGGTCTCCAGGAGACTGCAGACAGGGCGCAGACAATGTGATGTGCTGTCGGGAGGAGCACTACATAGACTTCAGGGAGCTAACCTGGACGCAATACTGGATCATTGAGCCTGCTGGATACCAAGCCTTTCAATGCCAAGGAGGGTGCAAGCAGCCCAAGCGCAGTTACGGCTACGGGCAGAGAACCTGCAGGGTTGCACAGACAGCACCACTGCCAGTCATGTACCTGGTGAAGAAAGGAGAGCACACAGCAATCGAGGTGGCTGAATTCCCAAACATGATTGTTGAAAAGTGTGGATGCTCCATGGACAAACTCTTTACGGCTTAAGATACGGCAACACTCGACAGTTCACCCAAGCACTTAAAAGActttatgtatattataatcTTGAAatgctgttaatttgtttttctctataaaatgttatatgtgTGATTcacttatatttttttaaaaataaagcaatttattttcaaa

Function

NR:

description
PREDICTED: left-right determination factor 2-like

GO:

id name namespace
GO:0003128 heart field specification biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0016049 cell growth biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005576 extracellular region cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04668 LEFTY; left-right determination factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252050.2 True 1499 mRNA 0.45 4 24107909 24110198
XM_022672493.1 False 1250 mRNA 0.45 5 24105212 24110198

Neighbor

gene id symbol gene type direction distance location
fzd3 LOC108428681,LOC107729283,LOC108270052,LOC107665105,LOC107589599 coding upstream 58590 24023542 ~ 24046622 (+)
LOC103037301 LOC108428614,LOC108269476 coding upstream 85701 24012553 ~ 24019511 (+)
LOC103037620 ctbp2a,LOC103037620,LOC108428680,LOC107692786,LOC107589601,LOC107729277,LOC107665110 coding upstream 95900 23939910 ~ 24009312 (+)
atg14 atg14,zgc:113944,LOC106602264,LOC106611244 coding upstream 534523 23564126 ~ 23570689 (+)
LOC103031726 tbpl2,LOC107729258,LOC107586674,LOC107693101 coding upstream 542162 23559052 ~ 23563050 (+)
ahi1 ahi1 coding downstream 2938 24113136 ~ 24125115 (+)
syne1 syne1 coding downstream 56921 24167119 ~ 24257250 (+)
rmnd1 rmnd1,LOC107586664,LOC107692687 coding downstream 154247 24264445 ~ 24269866 (+)
LOC103045657 LOC103045657,LOC108428691 coding downstream 161144 24271342 ~ 24275108 (+)
stx11 stx11 coding downstream 188973 24299171 ~ 24302766 (+)
G82816 NA non-coding upstream 189753 23913129 ~ 23915459 (+)
G82814 NA non-coding upstream 196604 23908338 ~ 23908608 (+)
G82813 NA non-coding upstream 199817 23904860 ~ 23905395 (+)
G82785 kiaa0586 non-coding upstream 333095 23769525 ~ 23772117 (+)
G82768 NA non-coding upstream 508738 23596212 ~ 23596474 (+)
G82838 NA non-coding downstream 26378 24136576 ~ 24138904 (+)
G83064 NA non-coding downstream 204517 24314715 ~ 24314965 (+)
G83071 NA non-coding downstream 239243 24349441 ~ 24350535 (+)
LOC111193226 NA non-coding downstream 246777 24356975 ~ 24367973 (+)
LOC111193227 NA non-coding downstream 462130 24572328 ~ 24576551 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 131237 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 227442 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 873894 23230430 ~ 23231318 (+)
G82488 NA other upstream 1747077 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 2431774 21520907 ~ 21673438 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 29191 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 785696 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 823966 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 919799 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 1050720 25160918 ~ 25329482 (+)

Expression


Co-expression Network