LOC103035446 (hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851)


Basic Information

Item Value
gene id LOC103035446
gene name hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20161268 ~ 20174309 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252180.3
ATACTGATTCTTCCTCTTGTCAGCATTGACCTCTCAAGATGGCAGGACTGCGGGCTCTCGGTGTTCTGTCCAGAATCACAGTGCGGCACAGATACACACTGTTTTCAGATTCCACCAGAAGAGGCTTCAGTGTCGCTTCTTCCTTAATGGCTCGCACGCATGTAAACTATGAGGTCAAGGGAGATGTGGCTGTTGTTCGGATCAATGACCCGACTTCAAAGGTGAACACACTGTCGGTTCATATGCAAAAGGAGATGGCAGAGGTTTTGGGTGAGGTCTGGTCCAACGATGCAGTCAAAAGTGCTGTACTGATCTCCTCCAAGCCTGGCTGCTTCATTGCAGGAGCTGACATAAACATGATCCAGGCCTGTAAAAGTGCAGAGGAAGTAACATATATCTCTCAGGAGGGGCAGAAGATGTTTGAAAAAATTGAGAAATCCCCTAAACCTATTGTTGCTGCTATCAATGGATCATGTCTTGGTGGTGGATTGGAGTTTGCCATCGCCTGCCAATACCGAGTGGCCACAAAGAGCAAGAAGACTGTTCTCGGAACTCCTGAAGTCCTGCTGGGTCTACTGCCTGCTGCCGGAGGAACACAAAGACTACCAAAAATgGTTGGTCTTCCCAGTGCCTTTGATATGACTCTGACAGGAAGGAACATCCGTGCAGATAAGGCCAAAAAAATGGGTCTAGTGCATCAGTTGGTCGACACTCtggGTCCCGGACTGAAGGGCCCGGAGGAGCGAACTATGGAATACTTGGAGGAAGTAGCTATAGAATGCGCTCGTGGAATTGTTAACAAGAAAATTCCACTTACTAAAGAAAAAGGCATGATGCAaaAAGTACAAGACTACGTTATGAGCTTTCCATTTGTGCGAAATCAAATCTACAATACTGTGCAGAAGAAAGTGATGAAACAGACCAAAGGCTTGTACCCTGCACCACTGAATATCATTGATTGTGTGAAGTCTGGTGTTGAGCAGGGATCAGATGCAGGATACCTAGCAGAGTCACAGAACTTTGGCAAATTGGCAATGACCACTGAATCTAAAGCCCTTATTGGACTGTACCATGGCCAAGTCGCCTGTAAAAAGAACCGATTTGGAGTTCCAGAAAAGGAGGTTAAAACCTTGGCCATCTTGGGAGCAGGGCTGATGGGGGCAGGCATTGCTCAGGTGACCGTGGACAAAGGAATTCACACTATTATGAAGGACACCACACTGGAGGGCCTCAACCGGGGGCATCAACAGGTTTACAAAGGACTGAACGACAAGACCAAGAAGAAGAGCATTACATCATTTGAAAGGGACACCACGCTCTCCAACCTTACAGGACAGCTGGACTACAGTGGATTCCAAAACGCTGACATGGTTATCGAGGCTGTATTTGAGGATATTGCTATCAAACACAAAGTTATAAAAGAGGTTGAAGCTGTCATTCCTCCACACTGTATATTTGCCTCCAACACATCAGCCCTCCCAATCAAAGACATTGCGGCTGCCAGTAAACGACCAGAAAAGgtgatTGGAATGCACTACTTTTCTCCAGTGGACAAAATGCAGCTTCTGGAGATCATTACTACAGACAAAACTTCTAAGGACACCACAGCCTCTGCAGTTGCAGTCGGCCTGAAACAGGGCAAAATCATCATTGTAGTTGGGGACGGACCTGGGTTCTATACCACTAGATGCTTGGCTCCCATGTTAGCTGAAGCTGTCAGGGTTCTGCAGGAAGGAGTGGACCCCAAGAAGCTGGATTCACTGACTACAGGCTTCGGGTTTCCAGTGGGTGCTGCTACTCTGGCAGATGAAGTGGGCATTGATGTGGCTGCTCACGTGGCTGAGGACCTGGGCAAAGCGTTCGGCCCTAGACTTGGTGGAGGAAATCCTGAACTTCTCAAGACAATGGTGGAGAAGGGGTTCAAAGGTCGCAAGACCGGTAAGGGTTGCTATGTCTACCAGCCTGGGCTCAAGAGCAAAGAGGTCAACATGGAGCTTAATGATATTCTGGAGTCTTTTAAGCTGACACCAAACCCTGCAGTGTCGTCGGACTCAGATGTGCAGTATAGGCTGGTGTCTCGCTTTGTAAATGAGGCTGTGATGTGCCTACAAGAGGGCATCCTGGCCAACCCAGTGGAGGGCGACATTGGAGCTGTGTTCGGTCTTGGTTTCCCACCATGCCTTGGAGGTCCTTTCCGATTTGTGGACACCTTTGGTGCAGACAAACTAGTGGAGAAGATGAGGAGGTTTGAGGACGTGTACGGAAACCAGTTCACTCCATGCCCACTTTTGCTTGATCATGCCAAGGATCCGAGCAAAAAATTTCATAAGTGACCTCATCATGTGCCATTAGAACTAGCTGCAGTATGAattctcattttcattttttaaggaTACAATGGCTGACCTAGTGTACTTCAAGCGAGAggtttgaatgtattttaatgtgaaAAGAATGTTATCATGCGAACATAAAGAGAATTACTATGTGCCCAAGTAATATTAAGGTAGCCTTTATACAGAATTCTAATCATGTTTGGgttgtttttgtttaacatATTTGATAGTTTTGTATTTCTAATGTAAATGATGGTTAGACCCAAGTTGTTTGTGTTCATTCTTGTGTATCATGATTATCAGGACAGATTCTAACAAGGAGCACCGTAACCTCTCTGCTGTACATTTCTGCTCATTCATTTATCCGTGAAGCAACTGGTTGTATGGCTGGTGTGAACATTGTCACTTGCTGAGATTTCTGTGGTTGGACCAGCTGTGCAGAGCAGAACAatcaactgaaaaaaataaataaacatgaactgttttaaactgaa

Function

symbol description
hadhab Predicted to enable enoyl-CoA hydratase activity and long-chain-3-hydroxyacyl-CoA dehydrogenase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial fatty acid beta-oxidation multienzyme complex. Human ortholog(s) of this gene implicated in fatty liver disease and mitochondrial trifunctional protein deficiency. Orthologous to human HADHA (hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha).

NR:

description
trifunctional enzyme subunit alpha, mitochondrial-like

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252180.3 True 2830 mRNA 0.46 20 20161268 20174309

Neighbor

gene id symbol gene type direction distance location
LOC103037509 LOC108425602 coding upstream 6586 20150418 ~ 20154682 (+)
LOC103040036 NA coding upstream 333063 19800197 ~ 19828205 (+)
LOC103039716 LOC108425599 coding upstream 393960 19765336 ~ 19767308 (+)
LOC103028664 peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353 coding upstream 1331311 18810473 ~ 18829957 (+)
ktn1 ktn1 coding upstream 1361050 18765653 ~ 18800218 (+)
tmem62 tmem62,LOC103132791 coding downstream 10601 20184910 ~ 20199839 (+)
elmsan1 elmsan1 coding downstream 38800 20213109 ~ 20246310 (+)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 217061 20391370 ~ 20446806 (+)
tmem229b tmem229b,LOC107752730,LOC107578043,LOC107708331,LOC107679790,LOC107666241 coding downstream 273601 20447910 ~ 20464852 (+)
LOC103044638 LOC108425659,LOC108270359,LOC107679799,LOC107752725,LOC107666266 coding downstream 540114 20714423 ~ 20771645 (+)
G81856 NA non-coding upstream 169539 19990539 ~ 19991729 (+)
G81830 dpysl5,LOC103380375 non-coding upstream 212851 19945135 ~ 19948417 (+)
G81827 NA non-coding upstream 236592 19921069 ~ 19924676 (+)
G81822 NA non-coding upstream 253170 19901163 ~ 19908098 (+)
LOC111193210 NA non-coding upstream 416840 19722199 ~ 19744428 (+)
G81913 NA non-coding downstream 11505 20185814 ~ 20187153 (+)
G81917 NA non-coding downstream 48173 20222482 ~ 20223668 (+)
G81919 crip1,LOC103034058,LOC106611282,LOC107600860 non-coding downstream 87290 20261599 ~ 20272723 (+)
G81920 NA non-coding downstream 126969 20301278 ~ 20301732 (+)
G81955 NA non-coding downstream 197805 20372114 ~ 20372392 (+)
G81763 NA other upstream 487630 19673127 ~ 19673638 (+)
G81761 NA other upstream 495221 19665736 ~ 19666047 (+)
G81704 NA other upstream 1230514 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1640321 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1691633 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1346598 21520907 ~ 21673438 (+)
G82488 NA other downstream 2183335 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 3056121 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 3701130 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 3735373 23909682 ~ 23973975 (+)

Expression


Co-expression Network