LOC103028664 (peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353)


Basic Information

Item Value
gene id LOC103028664
gene name peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18810473 ~ 18829957 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252500.3
ATATTTTCAACTGTTACTCTTTGTTTACATAATTGAAGGTGCCGCCTCAGACCGTGGCGGCCCAGGACTGTTCCACTCAGGGGGAGACTGTACTTTCACTTCCAGATTATTTCCCTGGGAATAGGCTTGTTTTTCGGTACTGTATGTTTGGCTGAGCATTATGGATGTTTACAATGTAGCATTTCACACGTCTAAAGCAGGAAAGGCAGATTCTAATGTTTATAGAAACTGCAGTCCGTCCTCCCCCCGTATAAAGTAGGCGTAAGTGAGTGGTATGTTCCACCCCCTACCGTGTAATGTTTTTCCACTTGGCAGAGAGAACGGTGAAAGCACGAAGTAAGGCGTATTTTTGGGATTGTGAAATGTTTCTCAAACGCGCATTCTTGACTGTACGCCCTGTTTCTGATACTTGAATTCAGCTTATTTATTTTGAGAGAAGAGCAGGGCTTAAGAGGCAGCGGGAACCAGGCGGAAAATGGCTGTTAGTCTCGTCCTTTGAAGTATTTTTTCCCTGTGATCTTTTTTCACTGGACTGGCTCGACCAACTCCATCCTGAGAGACGAGTTCGAGTGGAGAAGTTTGGAGGGTTAGCAGCCTCATGTTTTCACCGGGCCAAGAGGAGCACTGTGGACCCACCAAAGAGCCTGTGAAGTACGGGGAGCTGGTAGTTCTGGGGTACAATGGATCACTCCCCAACGGTGATCGAGGGCGACGGAGGAGCCGTTTTGCCCTGCACAAGCGAGCCAAGGCTAATGGTGTCAAACCCAGCACTGTACACATCCTTAACAACCCCCAGTCCAGCAAGGCTGTAAACTGTAAGGGCCAGCACAGTATCTCCTACACTTTGTCCAGAAACCAGACAGTGGTAGTGGAGTACAGCCATGATAAAGACACTGACATGTTCCAGATCGGCCGATCGACGGAGAACCCCATTGACTTTGTGGTGACGGACACTGTGTCTGGAGGTGGAGACAGCGAAGACGCCCTCATCACCCAGAGCACGATCTCACGTTTTGCCTGTCGAGTTGTGTGTGAACGCAACCCTCCATATACTGCTCGTATCTTTGCTGCAGGATTTGACTCCTCCAAGAACATCTTTCTAGGGGAGAAAGCCGCCAAATGGAAGAATCCAGATGGCCAAATGGATGGACTGACGACCAATGGTGTGCTGGTGATGCACCCGCGGGGTGGGTTCACAGAAGAGTCCAAACCCGGTGTTTGGAGGGAGATATCGGTGTGTGGAGACGTGTACACACTGAGAGAGACTCGTTCTGCACAAACACGAGGCAAATTGGTGGACAGTGAGAGCAATGTGCTGCAGGACGGCTCCTTGGTCGACCTGTGTGGAGCCACGCTTCTGTGGCGTACTGCTGAGGGCCTCTTCCACACCCCCACGCAGAAGCATCTGGAAGCCCTGCGGCAGGAGCTGAACGCAGCCCGACCCCAGTGCCCCGTTGGTCTCAACACTCTGGCCTTTCCCAGCATGCAGCGCTGCAGCCGGGCAATGCCCAGTGTTGCCCCACAGGAGGACAAGCAGCCATGGGTTTACCTGGCCTGTGGCCATGTTCACGGCTACCATGACTGGGGCCATCGTTCAGAAAGAGAGTCTAACGCCCAGAGGGAGTGTCCAATGTGCAGGGCGGTGGGGCCCTATGTGCCATTGTGGCTGGGTTGCGAACCAGCTTTCTACGTGGACACGGGCGCACCGACACATGCTTTTGTACCCTGCGGCCATGTATGCTCCGAGAAGTCTGCTCGCTATTGGTCAGAAATCCCTTTACCGCACGGTACTCACGCTTTCCATGCTGCATGCCCATTTTGTGCCACCCAGCTCAGTCTTACCCAAGGATGCTCCAAACTTATCTTCCAGGGTCCTGTAGACTGACGGGCTGACGACTAAAGAGGCTTGATGTGTCTAAGGCAAGAATGGTGCATGCCTTTATCTGAATGGAGCCTAGGATAGAGCGGTAGATTAAACAGGGGACATGTCGGAGGATTGTTGCACACCGCAAGCTGTGAAGCTCTTCTCATTTACTGAAACACTTTGTAATAACGAAGGATAAGGAAGATTTTAGTCCAGCTGAGCTTGTTGTTATTCTCAATTTTGCGCAGTTATATCCAAGTTGCCTTGGAGATCGATTGAGTTGTTAGCCACGGAATTTCCAGACAACTAGTCTGTGTTATGGACTGGAAGCTGTTGGATTAGCCCACGGAaattacaccccaccaacattGGGAGAACATTCAGACAACACTGCTGAGCCTTGCTTAAAACCAACAATTTCAAAACGTGTTGAAAAGATGTTGAAAAGCTGCAAACCAAGTTAAGTATACATTAGGATATTATCAGAGTATTACAAATTGAAATCAGTTCACCTATGTTACATAACATTTCTGAAACAATTAGCACAAAATTGGCTAATTCCACAACGTTCATTTCGGATATGAAATGCCAAAATAGTAATTGTCCAAAGATGAAATGGCTGCCAAAGCTGATATAATAATGGGCAACCTAGATTAGCATTCATCAGATCAGGGATAAATAAAGACGCTTTATCATGAACAGGATTATGCATCATATAATTCTAGATAAAGAGTGGTTAAtagattctctttttttttttttttttttttttactttcttattTGTCTCAACAGTAAGATTCCACTCTATGCTGTTTCGTCGTACTGTAAATCCTGAAACTGCTTTTATTGCTGAAAGGAACAGTATGCAATCAGGACTGTGAGTAGTAGAGAGCATCATGTCCTGTAATCAACATCCAAACATCTATGAGCTAGAACTTGCTTTGCACCAAAACCAGGTAACTTGTCGACTTTTTGAGGTATGAGATGTTTTAGGTGGCGGTCTGGCAGCTCATATCTCATTTCAGATTTGCCACCAGTGGAAATCAAAATCTTAATGGGatgtaaacatatattataaaggttattttaaaatgaaagaagttTTTATTCTTCTATTTTCTTAACCTTTGTACAGAGATGGATTTTAGTGCCTGCAAATGGGGGAATGTTTTTTACTGAGGTTTGAGTGAGCTATTTTCATCAGAATATGGGGGTTACTACGTTTTAAACAGATTATAAACttatcttattaaaaaaacgCCCTGTTTTTGTCAGCTGTTCTGTATTTTACCACATACATGTACAGTTTTCTAACAGATCatctatttattatttcaaaCATGCTGCCCTTTTCTAAAAAGAGAAGGTTATTTTGAATTCAGTATTCTGTCATGTCCTGACAATACTGTCACCTGGAAGCTGTGACTGCCAGACAAACGTTTGAGGCAGAACTATGTGTGGGAAAGAGGTGTATTTCACTGGCAATAATGCACTGCCTGAAAAATGTTCACTTGTAAAACCAAATACATATTTCTAAAGCA

Function

symbol description
peli2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in Toll signaling pathway and protein polyubiquitination. Predicted to act upstream of or within regulation of Toll signaling pathway. Orthologous to human PELI2 (pellino E3 ubiquitin protein ligase family member 2).

NR:

description
E3 ubiquitin-protein ligase pellino homolog 2

GO:

id name namespace
GO:0008063 Toll signaling pathway biological_process

KEGG:

id description
K11964 PELI; pellino

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252500.3 True 3407 mRNA 0.45 6 18810473 18829957

Neighbor

gene id symbol gene type direction distance location
ktn1 ktn1 coding upstream 10255 18765653 ~ 18800218 (+)
msh4 msh4 coding upstream 45893 18750693 ~ 18764580 (+)
atg2b atg2b,LOC107738272,LOC107664023 coding upstream 61344 18716538 ~ 18749129 (+)
npc2 npc2 coding upstream 97586 18708412 ~ 18712887 (+)
eml5 eml5,si:dkey-1f12.3,LOC108435760 coding upstream 106398 18634169 ~ 18704075 (+)
LOC103039716 LOC108425599 coding downstream 935379 19765336 ~ 19767308 (+)
LOC103040036 NA coding downstream 970240 19800197 ~ 19828205 (+)
LOC103037509 LOC108425602 coding downstream 1320461 20150418 ~ 20154682 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding downstream 1331311 20161268 ~ 20174309 (+)
tmem62 tmem62,LOC103132791 coding downstream 1354953 20184910 ~ 20199839 (+)
G81602 gskip,LOC107731910,LOC107561679 non-coding upstream 93274 18714205 ~ 18717199 (+)
G81600 isca2 non-coding upstream 104191 18704815 ~ 18706282 (+)
G81558 chmp3,LOC107732730,LOC107586824 non-coding upstream 260266 18545469 ~ 18550207 (+)
G81540 NA non-coding upstream 311595 18475117 ~ 18498878 (+)
G81547 NA non-coding upstream 338902 18470407 ~ 18471571 (+)
G81701 NA non-coding downstream 35719 18865676 ~ 18865988 (+)
G81705 NA non-coding downstream 101199 18931156 ~ 18937144 (+)
G81708 NA non-coding downstream 111451 18941408 ~ 18941814 (+)
G81725 NA non-coding downstream 470401 19300358 ~ 19324568 (+)
G81742 NA non-coding downstream 699470 19529427 ~ 19531587 (+)
LOC103033848 LOC108435752 other upstream 289526 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 340838 18460123 ~ 18469635 (+)
cmpk2 cmpk2 other upstream 773399 18027307 ~ 18037074 (+)
G80857 NA other upstream 3227142 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 3606686 15174535 ~ 15203787 (+)
G81704 NA other downstream 100281 18930238 ~ 18930754 (+)
G81761 NA other downstream 835779 19665736 ~ 19666047 (+)
G81763 NA other downstream 843170 19673127 ~ 19673638 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 2690950 21520907 ~ 21673438 (+)
G82488 NA other downstream 3527687 22357644 ~ 22358135 (+)

Expression


Co-expression Network