mrpl35 (mrpl35)


Basic Information

Item Value
gene id mrpl35
gene name mrpl35
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18523754 ~ 18528689 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252517.3
CGTTTTTGATTTTTGCATCTTTGTGCTCTCCGCTCTGTTTGTCCAAACTGCAGACCGTAGTTTAGGGTCGCCGTGCAGTTTGAAGATGGCGGCCACCTTGGCTAGAGGTCTCACAGGTCTGCTGAGACCTCTGACAGTGTTGGGAAGAAGCAGCATTTCCCAAGCAGCTGGACTCACCCAGCTGTCTCCTCGGTTCTCCACCCTCATTCAGAGACAAACTGGCTTTAAAACTCTGCCTGCGATTGAAGGCCCTTGCTCCCAACAGCACAGTGTGCTCCATCGTGTCACACCACTCATCCCATCATTGATGCTTCAGCCCACTAGGAATCTAACATACTATAGTTTGAAAAAAGGCAAGAGGAAGACAGTGAGGTCTGTGGTGAAGAGGTTCCTCCGATTGCACTGTGGTCTGTGGGTGAGGAGAAAGGCTGGATACAAGAAGAAGCTTTGGAAGAAGGGACCAGTCCGAAAAAAACGTTTAAGGGAACATGTGTTCTGCAATAAGACTCAGTgcaaaaaactagacaaaatgaCCACGTCTTTTTGGAAAAGAAGAAACTGGTACCTCAATGACCCATACCAGAAATACCACGATCGAGTCAacttcaaaatgtaaaacctgtattagcatattagcattGTACTGGTATATAGACATAAAGAAAATGCTTGttgttaaaactgtttaaaaataccATCAATGTTTTGGTGTTAACACACAGTAAAAAATGTCCATTTCTTAAGAtcagtgtaaatgtaatttCCAAAATAAACTGTTTCATCTGTTACA

Function

symbol description
mrpl35 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL35 (mitochondrial ribosomal protein L35).

NR:

description
39S ribosomal protein L35, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02916 RP-L35, MRPL35, rpmI; large subunit ribosomal protein L35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252517.3 True 790 mRNA 0.43 4 18523754 18528689

Neighbor

gene id symbol gene type direction distance location
LOC103034157 LOC108425685,LOC108269929,LOC107719399,LOC107664487,LOC107586877,LOC106610886,LOC106580683 coding upstream 13285 18503191 ~ 18510469 (+)
zfyve28 zfyve28 coding upstream 26715 18481679 ~ 18497039 (+)
LOC103032442 LOC108425610 coding upstream 83665 18436289 ~ 18440089 (+)
LOC103046791 NA coding upstream 111932 18349742 ~ 18411822 (+)
ahsa1 ahsa1,ahsa1b,LOC108425677 coding upstream 181471 18335100 ~ 18342283 (+)
hspa4l hspa4l,LOC107561683,LOC107586823 coding downstream 22332 18551021 ~ 18567654 (+)
plk4 plk4,LOC107703461,LOC107561682,LOC107664465,LOC107718857,LOC107586821 coding downstream 39979 18568668 ~ 18579571 (+)
LOC103031945 itpk1,itpk1b,LOC108435758,LOC107664466,LOC107561681,LOC106597151 coding downstream 52180 18580869 ~ 18632555 (+)
eml5 eml5,si:dkey-1f12.3,LOC108435760 coding downstream 105480 18634169 ~ 18704075 (+)
npc2 npc2 coding downstream 179723 18708412 ~ 18712887 (+)
G81539 NA non-coding upstream 23043 18447388 ~ 18500711 (+)
G81540 NA non-coding upstream 24876 18475117 ~ 18498878 (+)
G81547 NA non-coding upstream 52183 18470407 ~ 18471571 (+)
G81537 LOC108425611 non-coding upstream 81043 18441069 ~ 18442711 (+)
G81466 NA non-coding upstream 246564 18276863 ~ 18277190 (+)
G81558 chmp3,LOC107732730,LOC107586824 non-coding downstream 16780 18545469 ~ 18550207 (+)
G81600 isca2 non-coding downstream 176126 18704815 ~ 18706282 (+)
G81602 gskip,LOC107731910,LOC107561679 non-coding downstream 185516 18714205 ~ 18717199 (+)
G81701 NA non-coding downstream 336987 18865676 ~ 18865988 (+)
G81705 NA non-coding downstream 402467 18931156 ~ 18937144 (+)
LOC103033848 LOC108435752 other upstream 2807 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 54119 18460123 ~ 18469635 (+)
cmpk2 cmpk2 other upstream 486680 18027307 ~ 18037074 (+)
G80857 NA other upstream 2940423 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 3319967 15174535 ~ 15203787 (+)
G81704 NA other downstream 401549 18930238 ~ 18930754 (+)
G81761 NA other downstream 1137047 19665736 ~ 19666047 (+)
G81763 NA other downstream 1144438 19673127 ~ 19673638 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 2992218 21520907 ~ 21673438 (+)
G82488 NA other downstream 3828955 22357644 ~ 22358135 (+)

Expression


Co-expression Network