LOC103038992


Basic Information

Item Value
gene id LOC103038992
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18308247 ~ 18315290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252537.3
ctctgtTTCTGCGTCAGagctaaagcagcagcagcagcagcagggcggAAGCGGCTCTGTGTTCAGTACTATACTACACACTGGATACACACCTGTGGATCTCATCGACAGAGAAGAAACTCTCCAGATTCTCTACAGGAGATTGTATTCCTGGAAATCCAGCCTCGACACCAGAGGAGGTAATGCAGAGGTTCACCCAGCCAGTGGAAGGAAGTGTTTTTTGTCAGACTCCCAGCTGAAGCACAATGGAAACTTCCTGCTTTTTCTCAGATACAAGAGATACACCAGATACACAGCACTTAATCCACTCCCAGTGTGAACAGAGAAGAGATGAGCAGTAGTTATCTAAATAGGTCAAACAGAAAGAACCAGGCTCTACCAGTCTACTGAGGAGCTTTGGTTGGAAACAGACAGTCTTTCATGAGCAAGATATTGTTTAAACAGTAAAGAAGTATTGGAGGATTAAAACCTGACTTTTCATTAACTCACTAACCATATGATGAGCGAGTGTGCCGTACTGGAAAACCTCAGTGAAGATGGCTTTCACAGCTGTGAGGGCTTTGCAGATTGGTCCTCCTACAGCCCTGTACACTGGAATGGGAATCAGGAGGACAGCAGCAACAGTTTTGGGGACTGGAGTACTTTTAATAGTAATCTCAGCAAAGACAAAGAACCTGCACGCTCAGAATCGCCTCCAGAAGAGGGACGTTCTGGTCACACACACAAGGTGGAGAAAAGTAACAAGCTCAGATCCTCGTCTGTGTTCTATGACTGCTTCCATGCTGAGGAGACCATAAAAGATACGGCTGTAATGGAGATCCCACCACTGTCCCAAATGCTGCTCAACTCAGCATCTACACCTCCTCAACCAGCAGCACTATCAAGTGCGGCTGCCAACCTGTGCCAGCGGCTGCTGTGTGAACCAGACTGTCTGAGCCTCTCGGGTCCCAAACCCAGATTACACTCTTACAAACAGCTGATCAACACACTCCATCTCACAAACTCAGACCCAAACATCTTCCAAAATACAGACTTTTCTGATCAGGATTTTGAAGAGCAGGAAAGTTCTCCGGCTGCTCTCATCCAGACTAAGCTAATGGTGCCCACCCTGTGCCAGAATAAACCAGGATACCTCTACCAGATCTCCCGCCAGTGGCTCAGCCAGAACAGCTTGAATCTCCTACCACATTAGGACAAGCAGGTCCTGCTGTAATCAATAAAACACTGTACTGCACCACGCACTCCGTGTATTAGCTCAGGGAAGCTGTGCTTTCACacaataaaaaagctaaatttgtACTTATATTCTTACTTTTCCTATTGTAATTTTGTTACAAGCTTTTATGAAGCATTTTTGAAGAATTAAACACTGCAGATATGTTACAAGCTACTTACAATGTTACAAGCTACTTGTACAGGCTGTTACAACGATCTGAGAATGTCCTGAATGCACATCAAATGTatccatccactactccattTCAAGAAGAGTCACATAAAGATAAATCTAGTTCAGGCTTCATTTCTATGCACAAAATTCTTGTCTTGCTACCTAAAAGGATGTTACAaaaatttctgtttttattatgttttatttctacACCTAAAATGTGTATGGATATGAAGTGTGCATTATGTAAAATATTGCTTTTGTTTCATAACAAGCACGAATCTATGAATAAGTTTCCAATGTTTTCTTCCATGAGGCTATACTGTATGCAGCTGATTTGCTAAGAACAAGTCAAACAAGTCATATAACTTTTTTTGCAATGCTGCCTGCACTTGTTTCTGTATATGACAAGCTGACATGTTTTGCcattgttaaaaatgtaaatctgaAGATACTGtatttgaatgtttgtttgttttagaaaATTGACTGAGGATTTTTCAGTCGACGATCACTGAGAACTGAAGGAGCAGAAGTATTTCCTTACTTGAAATGATTTGACTGTTATATGTAATATTTCTGCAACACTGATCTGTATTTAAGTATTAAGTTATAACCATTTTAAGTATGGTAGGTCAATATACGTGAGGGTGATGGTTACTGCTGCCTGGAAGTTTTGTGAGGATAAATCTGTGAATAAAACTATGCAATTATGAACTTTTATATCTACTATGGACAAATTAATAATGGGCATCCTTTATTAAAAGAACTGaaggtaaaataaatgtacaaaatctGATGATGTGATCAATTACTTAAACAGGCTTGTTTTTATCTAAGCACTTTGTCTCTTGCAACACCTGCTGGGTAAAACaggcaatggaaatctgtaagcaaaaaaaaaaacactacattgtaTGTTACAAAAATTCTAATAAAACTTTGCATTTGGA

Function

GO:

id name namespace
GO:0038024 cargo receptor activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252537.3 True 2343 mRNA 0.40 6 18308247 18315290

Neighbor

gene id symbol gene type direction distance location
eprs eprs,LOC107662594,LOC107679779 coding upstream 2153 18284577 ~ 18306094 (+)
iah1 iah1 coding upstream 405409 17897957 ~ 17902838 (+)
asap2 asap2,LOC107707693 coding upstream 432165 17754553 ~ 17876082 (+)
LOC103043735 id2,id2a,LOC107579075,LOC107707685,LOC106566577,LOC107655320 coding upstream 788706 17516972 ~ 17519541 (+)
sh3yl1 sh3yl1,LOC107733179,LOC107594817,LOC107674108 coding upstream 1469543 16782537 ~ 16838704 (+)
ahsa1 ahsa1,ahsa1b,LOC108425677 coding downstream 19810 18335100 ~ 18342283 (+)
LOC103046791 NA coding downstream 34452 18349742 ~ 18411822 (+)
LOC103032442 LOC108425610 coding downstream 120999 18436289 ~ 18440089 (+)
zfyve28 zfyve28 coding downstream 166389 18481679 ~ 18497039 (+)
LOC103034157 LOC108425685,LOC108269929,LOC107719399,LOC107664487,LOC107586877,LOC106610886,LOC106580683 coding downstream 187901 18503191 ~ 18510469 (+)
G81466 NA non-coding upstream 31057 18276863 ~ 18277190 (+)
G81465 NA non-coding upstream 41763 18266219 ~ 18266484 (+)
G81460 NA non-coding upstream 97906 18209785 ~ 18210341 (+)
G81452 NA non-coding upstream 171041 18136612 ~ 18137206 (+)
G81446 NA non-coding upstream 213149 18076372 ~ 18095098 (+)
G81537 LOC108425611 non-coding downstream 125779 18441069 ~ 18442711 (+)
G81539 NA non-coding downstream 132098 18447388 ~ 18500711 (+)
G81547 NA non-coding downstream 155117 18470407 ~ 18471571 (+)
G81540 NA non-coding downstream 159827 18475117 ~ 18498878 (+)
G81558 chmp3,LOC107732730,LOC107586824 non-coding downstream 230179 18545469 ~ 18550207 (+)
cmpk2 cmpk2 other upstream 271173 18027307 ~ 18037074 (+)
G80857 NA other upstream 2724916 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 3104460 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 3473168 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 3505215 14788602 ~ 14803032 (+)
LOC103035760 rtkn2,rtkn2a other downstream 144833 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 196332 18511622 ~ 18520947 (+)
G81704 NA other downstream 614948 18930238 ~ 18930754 (+)
G81761 NA other downstream 1350446 19665736 ~ 19666047 (+)
G81763 NA other downstream 1357837 19673127 ~ 19673638 (+)

Expression


Co-expression Network