tmem229b (tmem229b,LOC107752730,LOC107578043,LOC107708331,LOC107679790,LOC107666241)


Basic Information

Item Value
gene id tmem229b
gene name tmem229b,LOC107752730,LOC107578043,LOC107708331,LOC107679790,LOC107666241
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20447910 ~ 20464852 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252559.3
TAGATGAGTTATTTTATAAGTGTCTATATGCGGACTTTGGACAGGCTCTGTTACAGTGTGAGGCTGGGCAgaagagcagcagcagtgaagGGGTTAACTCGCTCGAgctgagagcgagagagggagctGTGGGTGCTGGATGCCCGAGCTCGTCTCTGAGCATGTGCTGATGGTACTGCTGCAGTGAAGTAAAATGTGTCAGTTAGCagaggagagggggagagagaggctAGCCGGGGGAAATGCAGTGTGAGAAGGAACCGGCACGGGGATTTTCCTGTTTTGTAGCCTCTCTTTCCACACACTACGATGCGCTTCCAGAGGCCTGATCCCAGCCGCTCTACGCCCGAAGAGTAAACAGACGCTGAACTCCCTCAAAGTTTGGAACAAAACAGTCAAGATGGTCACCATGGCAACAACGATGACCCCAGAGCCACTGACGGCCTTGTCGCGGTGGTACCTGTACGCCATCCATGGCTACTTCTGCGAGGTCATGTTCACGGCAGCTTGGGAGTTTGTAGTCAACTGCAACTGGAAGTTCCCCGGTGTGACAAGCGTCTGGGCACTCTTCATCTACGGTACGTGCATCCTCATCGTGGAGCGCATGTACCTGTGCCTGCGGGGCCGCTGTAACGTGCTTCTCCGCTGTATCATCTACACGCTGTGGACCTACCTGTGGGAGTTTGGGACTGGCCTGCTGCTGCGGCAGTTCAACGCCTGCCCCTGGGACTACTCCGAATTTAAGTATAACTTCATGGGGCTGATCACGGCGGAATACGCTGTGCCTTGGTTCTGCGCATCCTTCATCGTGGAGCGCCTGGTCATCCGCAACACGCTGCGGCTACGTTTCGACGAAGGGTCTGAGGCTGGCCGGACTGGAGGACAGCCTGACTGTGGTGGAGATGGTGGGGCAAGAGCAGGAAGTGAaggaaggagaggaagaggagccAGAGGAGCGGCAAGCAGTGCCAACGGCTACGTGAAGGTGGACTAAATCGAGATTGCAAGGGTAGTCAAGGATGCAGCTGTTCCCTAGCCCATTTCAAGGGTTTCCTTTCCTTGTGCCCTCAATCTGTCCCCTTTGCCCCTCTGCTGTTATATCCATCCACATATCCGTCCGGCTCTTTTCCCTGCACTACCCCCCCCCCTATATGAACAATCTTTGGGCACAGTTGGTGTGGaaccatggaaaaaaaaaacacaaagcttGGACAGATATCTTCCACAACTATAAAGCACTATTGTGGATGTATCTGTCTAATTATTTGTCTTTCTCTGTTTACACAGAAAAGAGTGTCTCCCCAGTCTCTCCACTAATGCCCAATGCCAACTCCTCATGCCCCTCATCTTCCAGCAGCTATTTTAGACCAGGGATGACCCAAAAGAGGAGCATGCTAGAGCAAGCGTAGATTTTATCCACTTACTGTCACTGTCCGAAACCTCCAAGGCCAGTCCATCCACCTCTAaaacagagagggagaaagaaaacaaacaaccaaacaaaaaaaaaacatgaggacATGTGTACTACTGATAAAATGGCATCttgaattaaatataaagaaaagaaacatgTTTGCAGAAAATATCAAAAGAACACTACTCAGAATATTTTTTAGCATATTAAAAAGTCTACAGTGTGTAGTAGCAAAAGTAAATAACTGTTAGTATAAATACTTACCTTCTGaggtttatttgttaatatttatcTGATGATAGTTAAGAAGTAACTAAACTATATAACATAGGCCTATAGTAAATGGTATACTGTGCCCTAAAGCAATGCATTGTACTTGAATCTATGGTTTTTAtactataagaaaaaaaatcccaggGCTTGAACATGCATGAAGAGTGTCTTCCAGAATTTTTCATACAGAGTCAGATCTGCAATGtattctgtatataaaaaagaactgagtgatttatttttacttaaccACATGGACTAACACAGAGGAACACTGTATTGTTTTCACTTGTATCTCTTGTAATGAAGCCTGCTGCTGATTGTTAGTATTGTAGAATGAGTTAGATCAAAATATCCTGTGAACAACACACTGGAGAGCGAGTGAGCGTTTTTAAATAGGTGCGAAAATCTTGATCTGGTGCTATGTTCTCACTCCGACCACACAAAATATCTCTGTATGAATATTAAAGGGTCCAGACTTAATGCACCATAGTACCTGtgggaaaatgggaaaaaaaaagaagcaaagcaGAACAGATGTTAAGAAAAATGGCTTGGCTCTAGAATGAAAAGTGCGCAAGAACAAGTGTCAAGAACACCTTGTTAACAAGTCACTTTTCTGTCCATCGATTAAAGACTTGCTATCTGCATGGTAAATTATGGTTGATGATAATGTCACAAAGCTTCAAACATCTGTTTTTGATTCTGTTGAAAGTGGCTGATGatgttttgtattaaaaacCTAAATATCCCATCTGTTCATTAATTAAAGCCATTATTGCACCGTTTTGA

Function

symbol description
tmem229b Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cranial ganglion; epiphysis; hatching gland; hindbrain; and neurons. Orthologous to human TMEM229B (transmembrane protein 229B).

NR:

description
transmembrane protein 229B-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252559.3 True 2482 mRNA 0.45 2 20447910 20464852

Neighbor

gene id symbol gene type direction distance location
mta1 mta1,LOC107679789,LOC107666257 coding upstream 1104 20391370 ~ 20446806 (+)
elmsan1 elmsan1 coding upstream 201600 20213109 ~ 20246310 (+)
tmem62 tmem62,LOC103132791 coding upstream 248071 20184910 ~ 20199839 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding upstream 273601 20161268 ~ 20174309 (+)
LOC103037509 LOC108425602 coding upstream 293228 20150418 ~ 20154682 (+)
LOC103044638 LOC108425659,LOC108270359,LOC107679799,LOC107752725,LOC107666266 coding downstream 249571 20714423 ~ 20771645 (+)
slc25a21 slc25a21,LOC107679800 coding downstream 312586 20777438 ~ 20888798 (+)
LOC103021743 nkx2-8,LOC108421114 coding downstream 450414 20915266 ~ 20917239 (+)
LOC103043023 nkx2-1,nkx2.1,LOC107578306,LOC107582966,LOC107679765,LOC107666245 coding downstream 456685 20921537 ~ 20925668 (+)
mbip NA coding downstream 476856 20941708 ~ 20959391 (+)
G81955 NA non-coding upstream 75518 20372114 ~ 20372392 (+)
G81920 NA non-coding upstream 146178 20301278 ~ 20301732 (+)
G81919 crip1,LOC103034058,LOC106611282,LOC107600860 non-coding upstream 175187 20261599 ~ 20272723 (+)
G81917 NA non-coding upstream 224242 20222482 ~ 20223668 (+)
G81913 NA non-coding upstream 260757 20185814 ~ 20187153 (+)
G81983 NA non-coding downstream 78859 20543711 ~ 20543911 (+)
G82014 NA non-coding downstream 307904 20772756 ~ 20776477 (+)
G82073 NA non-coding downstream 482744 20947596 ~ 20948442 (+)
G82089 NA non-coding downstream 554240 21019092 ~ 21019862 (+)
G82088 NA non-coding downstream 557218 21022070 ~ 21022572 (+)
G81763 NA other upstream 774272 19673127 ~ 19673638 (+)
G81761 NA other upstream 781863 19665736 ~ 19666047 (+)
G81704 NA other upstream 1517156 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1926963 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1978275 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1056055 21520907 ~ 21673438 (+)
G82488 NA other downstream 1892792 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 2765578 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 3410587 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 3444830 23909682 ~ 23973975 (+)

Expression


Co-expression Network