npas3 (npas3)


Basic Information

Item Value
gene id npas3
gene name npas3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22857844 ~ 23154585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253775.3
GAGGAATGGCAGAGCTGCACACCAgggtacacacacatatatacacacacacactctcgctcaCATACACACCCACATATAGGCTACTACTACACACGCGCGCACcagcggcggcagcagcagcaccttTACTGGGAGAATTCatccaacagcagcagcagcagcagtctaTCAATAAACACAGCGCTGTACAGCCCGTCTTTAGCGGCTTTAGAttaaaggaaaacacatttgtgGAGCTCGAGCCCACTACCTACACTatagcagcagcaacagcagcagagcaACACCGCGAGCAGACCgaggagagagagcagagcagagcagagcaggagAAACACctaaacaccagcagcagcagcacatcaTCACTACTGCTACTACAGCTGATCCAGGCGAGCCCAATACGTCATCCTTATTCATTCGGACTTTTCCTCGCGCCCAGGCACATAACTACTTATCTAACCTCAGTTTATAGCCTGTCCTGTGTGTCTCATCTCCACACAGTAGCCTGCACTTACttttaattagctttttaataacttttaactGCTTTTAACGGGTTTATTTAACGATAGCGAGCTTTTGCTGGAGTTGCTAGTTTGTTGCGACGCTAACTTTTTAACGGTTTTATTTAGCTCGTTAGCGTAACtaagcaacaacaaaaaataaattaaataaaagttcttCCACTTCTGCCACATTAgctatttatgtttatatgtatttatttgtgttggACACTGACAGGTAAAAGGTAGATTAGAAAGTTGAACAATAACCTAGAAGCTTCCACGACGCTTTCTGATGCCTCTCATACCTAACTTAGCTTATATGATTGTGTTTTATTAGCtaagcaaaataaaagtcatatGTGCATATACGCttcacactttattttttaatttctgtcgttctcactttttttaaatttttttttaagtaaattaagttAACCTAACATTAACTAACCTATGTTTTGTGAGGTTAGGTgacttaggttagctagttaattatgGCTAAATAACCGATATAACcgtgtttacacacacagacagagagagagagacgaaccGGTTTAAatcttaaagttttaagttttaggaGGTTTAACTCGCGCGCGCACCAGCCGTTTTGAAAAAAGTAAAGTTGaagaaaagcaaaagaaaagaaaagcaacagaagcagcagcatcatcatcatcatcagcagctcGCCTTCATCCTCCTCTCTCCCAGCACTGACCCCCCGCTCAGCATCCCCACTCGTGCTCGTAGCATGGCCGGTGAGCTGGTTGTGAGCGTCACTGATGGGATTGTGTTGTGACTCGCTGTGCCGGACTGCACGCGCttctctcttactcacacacGGACTCGGCTCGCGCTCCACTCCCTCGCGCGGGGATGATCAGGATCTTCCCGGATTTCAGCGTTCAGGTGACGGCGGCGGCAGGTGGCGCGGCCGGGGGGATGCCGGCTGCCTCGGCTGTGGGGAGAGTCCCCGGCGCAGCTAACGGCAACCCGCAGAACGTCCAGGGCTTGGCCACGTACCAACAAAGCGACCCTTACTGGGAGAGGCCAGCTAATGCCAGCTCCTGTTCAGCCACTAGGCCCAAGACACTTCACCTTGGAGGGCAACAACATACCTCATCACCATGGTTGCAGGCTCTAAGGAAGGAGAAGTCTCGTGATGCAGCACGCTCGCGGCGGGGGAAGGAGAACTTTGAGTTCTACGAGCTGGCCAAGATGCTGCCGCTCCCTGGCGCCATCACCAGCCAGCTGGACAAAGCCTCCATCATCCGCCTCACCATCAGCTACCTGAAGATGAGGGACTTCGCCAATCAGGGGGACCCGCCATGGAACCTGCGCATTGAAGGACCACCACCCAACACCTCAGTGAAAGCTATTGGATCCCAGCGGAGGAGGAGTCCGAGCTCAATTGCCTCAGAAATCTTTGAGCCACACCTGGGCAGCCACATCCTGCAGTCCCTGGATGGATTCGTATTTGCACTAAACAAGGAGGGGAGGTTTTTGTACATCTCAGAGACCGTGTCCATAAACCTGGGGCTTTCACAGgtGGAGTTGACGGGCAGCAGCGTGTTTGATTATGTTCACCCGGGTGATCAGGTGGAGCTGGCAGAGCAGCTGGGGATGAAGCTTCCTCCAGGCCGGGGGCTGCTGTCTCAGGGAGGCGGTGCTGAAGATGGTGCcagctccgcctcctcctcctcccactCCGAAACCCCAGAGCCAGTGGAGTCTAGCAGTCCCAGCCACCTCTCTCCAGACAACACTCTTGAGCGCTCCTTCTTCATCCGAATGAAGTCCACACTGACCAAGAGAGGCGTTCACATCAAGTCCTCCGGCTACAAGGTGATCCACATCACAGGCAGGCTGAGGATACGAATGGCTCTAACGCACAATCGCAGTGTGCCCAATCAGATCATGGGCATGGTGGTGGTCGCCCATGCTCTCCCTCCCCCCACTATTAACGAGGTTCGCATAGACTGCCAGATGTTCGTCACACGGGTCAACATGGACCTCAACATTGTCTACTGTGAGAATAGAATTAGTGATTATATGGACCTGACACCTGTGGACATCATAGGAAAGAGATGTTATCATTTCATTCATGCAGAGGATGTGGAAGGCATTCGGCATAGCCATTTAGACTTGATGAACAAGGGCCAGTGTGTGACCAAATACTACCGCTGGATCCAGAAGAATGGTGGCTATATTTGGATCCAGTCCAGCGCTACCATCGCCATCAATGCCAAGAATGCCAACGAGAAGAACATCATCTGGGTCAACTATGTCCTCAGTAATCCAGAATACAAGGACACACCTATGGACATCGCACAGCTTCCAAACCTGCCAGAAAAAGCCTCAGAGTCCTCAGAAACATCTGACTCGGAGTCCGACTCTAAAGAGAACTCTGAAGACAATGAAAATTCTAAATCAGACGGGAAAGGGAATCAATCTTCAGAGCACAGCGAGGACCCAGAGTCAGACAGCAAAAAACATGCAGGTCGGCCATCAGAGCAGGAGATGAGGCGGCAGGAGGAGGGTGACAGCTCCAGTAACCCAGAGAGCCAGGACAGCGAGGACAGCCTGGAGCCATCTGACTGTGAGCCCGAGCGCAAGGAGGGACGGCTGGCCGAGCTGGGTGGCCTGCGCATCAAAGTGGAGCGCTACGGAGATGGAGATGGGACGGAAGTCCAGGATTCCCCCTCATCCTCCTCTGAAGAggaagaagatgaagatgaggaagaagaggatgaagatgagGCTGGAATGAAGGACTGTCATAGTGGAGGGGAGCTGAGCGGACCTGCAGTTAGCAAACACCAGAGACGgaagaagagaaggaaaaagcAGCAGAAATGGGATGCCAGTCGCCAGCGGCTACGACTTTCACCCCCGGTCGTCGCCACCCCAAGCCCCGGTAGTCTGGACCCTGCATTGGGCGAGCAGCCCCCCTTACTTCCACCGCCCTCCCCAGCCACCGCTTCTGTGCTGAAGATTAAGACGGAGATGGCCGAGCCCATTAACTTCGACAACGACAGCAGCATCTGGAACTACCCACCCAACCGGGAGATCTCCCGCAACGAGTCGCCATACAGCATGACCAAGCCCCCAGCCACACACGACAACTTTCCATCCCCCCAGTCCACTGGCCTGCAGGTGGCCATCCCAGACTCGGTCCTCACTCCGCCCGGCACTGAAGGAGGAGCGGGCAGCAGGAAGTCCAACTTCACTAacagcagtagcagtagcagcaacaacagcaacagcacCCCCTCTTCAGCTTCCAGCTCAGCTTCCACAAGCCTGGCTCCACACTCTTCCAACTCTGCGACCTCTGACCCCCTTTCTCCCCCTCTGTCAGCTTCACCGCGGGACAAACAGCAGGGCACGCCCACCTCGCAGGGTTCTCTTCTCTACAGCAGTGACCTGGAGGCCCTGCAGCGGCTGCAGCAGGCAGGGAACATGGTGCTTCCTCTAGTGCACCGGGTCACGGCCACCAGCACAGCAGCCGCCCCACGCGTGTACACCACGGGCACCATCCGCTACGCACCAGCTGACGTCACACTGGCCATGCAGGGCAACCTGCTTCCCAACGCCCACCCCGCTGCAGCAGCCGTCAACTTCGTGGACGTCAACGGGCCCGGCTTCGGCATCGACCCCAAGACACCCATGGAGATGCTGTACCACCACGTGCACCGGCTCAACATGTCTGGGCCGTTCGGAGGCACGGTCAGCGGGGCCGGACTCACGCAGATGCCCGCCGCCAACGTCTTCACCACCGCAGAGGGACTCTTTTCCTCGCTGCCCTTCCCCGTATACAGCAATGGCATCCACACCACACAGACTCTGGAGCGCAAAGAGGACTGAATGCAAAACTCCAAGACCATATTACTGTGTTCAACTGTGTTCAAAAAGACTCTTTTAGAGGCAAAAGACTGTGTTTCGAGTTGGGGGGTAATGAAATGTTCTAGCACTTTGAATTTCAAGCAATCATGCTTGTGTAActgaaacaaatgtttttttctgtctttctatctctcttctttttcttccacATCCTCTTccgctttctctctcctttcctctaGTTGTTAATGGCATTTTCTTTAAACAACTAAACAGACTTCTAGTTCAGAGAGGTCCTTTGAGCCACAGAGAACTCGTCATACCGTGGTGTGGGGTTTCTCTGTGGTAAAACGAGGCATACTTtttgacttaaataagtaaattacaTCCTAACCAGGATGTCTTGTGTATTTAAAGGCAATTCAAAAAGGAGATTGAGATGAAAACTGTTCTTCTTTTTATTAGTATCTGTCTTGATGTGATCAAGGTTGACTCAGACAAAAGGATGTTACCCTGTTTGACATAGTTGAAAGGGTTTTAGGGTTCTTTCTTAACGAGGGAATagtattttaggaataatgctTTTCTTCGTTTTTTTATAGCTCAGATTTTACTTACGAatcatgcatttaaaaaaaaaaagcaattttagcCGGGTATTGACCTGTGAACAGAATGTTACTATAAACTCCCAGGACTTTGGAACAGGTCAGTGTGAGATTCCTCCGGTTCCATCTTCTTTTTGCAGTTCCATGGTGCTAACATCAACTAACCCTCACTCAGCTGGCTGATGTAGGTACTGTTCCAGAGCTCAGCACGAATGAAGGCTTGAGAGATTTTCTACTGAAAAGTCAAACCTATAACAGACAGGTTTATTTTTCACGAGTTCGTCCCCCACAGAGATCGGAGAAGGGTGCTGACGGCGGCTCAATCTAATTGAGTCAGGAAAGAGATTTGGAGCAGGTTGATTCTGTTTGTACTTTTAAGTGAATATCTTCTCTCAGTGTAACTGAGGCTAATTTTTTTGCATCATAGACTTGAAGATGAATGTGAAACTCTAACTCTTCAGTCAGCCCCCCCCCCATATCTCTCCTTCTTCTTACATTGAAAGCCTAGTACATTTTCTTCCCACCAGTCTCCCAAAATCAGTTTCCCCTCACATCCTTCATGAACTCTGGATACCACATATCAAGGAGATTGTAATATGGACATGCATTTTcaatcaaaaatgtgttttgaaaaATCAcattcctatttttttccactgttgccaaaaaatattatcacagtTTAGTGTTAAAACACTGTGAATTGTcgtttgaaaaaaagaaaagtaataaaaaaggaagaaaactgTCACTTCATCTTTTGGCAGCCATCCATCAAGTCATCTATTACCAAGCGTGATAACCGTAAACGTGTACAATGTGTAAGTGTCATTGGCTGTCAGTCTCCATAGCAATTTCAGTGTGTGTTACTATATGCAGTATATGCCGAGCTGATGTAGCTGTTTCGTCCTTTGTCCTCTCTGTGCTAGTGTGGGCTTGGACAGGGAAACGCGAGTTCTCCCTCTCCTCCCCCCCTACAGTCTTAGTGAACCAGTGGAGGTTAGTGGATTTTGTGTGGTGGCCTTCCAATGTAGTGTCACCTTTTTGCTGCTTCCTTTTGTCTGTATTCCTTTTCTGTTCCTGCTATTGCTTTGCTGTCGTGTAGTCTacagacctctctctctctttctctcagagaTAAAAGACTCTTAACTAGCTCAAAGGTTTAAGGAGCCATTCTTTGCCACTGAGGAATTCTGGGATTTCCGTTTCCAGCTGGAAACTGATGAGgataaaaaaactgaagtagCATTTAGACCTAACGTCTACACTGGAAAACCTCAAAGGCCGCAGTTGTGAAACACTCCCAGAGTCCCTTGTGCTTCTCGTGTGCATTGGGTGTATTTCATTGGTTTCCACCAAACCTGTTGACTTCAAGGACCCTGCAACTCacaggaaaataataataatactaataaaaagaTTGTGGTAGTATTTCAGGacaataaacaattttaaagaTTTCTAAGGAGTTGAAGAGAAAAAATTTCGcactataaaatctatttttataggTGTTTTGAAAATGCATGTTTACTAAGTTGATCGTTTGGTTTACTTCATTTTCTTCGGTCCAGCAGCTTTGTCAGcgtttagtgttttttagtcTGTCCAGCAAAGGAAAGGGGGAGCCTTTTGTCTTTTTACTGAATCAGGCGACTCCTGTACATCAGGAAACTCATGTCTGTGGTTTCTGTGCAGATGTGTTGTTACTCAAACCCAGGTCATGATatatcaatgtttttaaaagcgATAGTGGGGGGCTTGCTGTTGGAGCAGTTGCAGGAGAGCTTGGCGTCACCACTGGAGGTCAGCGGGAACCTAGAGTTTAGCGTTTTCTACATTGCAGTGCAAAGTTGTGCTGGGGCGGGGGCAGCTCAAAAAACAGACACTGTGGACCAGGAAATACACCCATATGTTACAAACTGAACAGCCGGGCGAGCTGTCTCaatgtttttctgtgttgtgtCAAAATGATTGCTGGTGATTTAATCTAAAACTAATCTCAGCTGCTGTCAGATAAATAgtgtttaaaaattacaatatgaAAAATCACTTCATTACCTGTGAaaactgtgtctgtgtttttaacTATTTCTTGTACAATTATACAGATTCTTTTATGAGGAACTTGGTGCCAAGTAGATGAAATACGGGAGAAAGGGATTCTCTTAGTATCAATGTTAACAGTGTTATAAattctaaatacaaaaaattaaaatattaaaaagagaaaactatggtacatttttattttcttttttgatcaatttttattttttctttttccaaaaaaagaaacataactAACTGAAGCTAACTGAGTGCctggcttattttttttttttttgaaaaacatctttttttttcatttaccaTGAATAATGCTGCAATTCTGAAATGTACATACTTCATTTTACAACAGGGTTCTTTTATACTTTTGTAGGTTTTCATCAGTTTAAGCAAACATGTCATACATGGTTGTCTTTATGTAACACAGTTTTTTACCATCTTACAGGTGCCATATTCATAATAAACTTCTCTTGGATTTGTTACTATCTGGCATcatttctgttctgttcagTTCATCTCAAGTGAACGCCACACATCAGTGACTTCCTTcccttctttatttctctccttcTTTATTTCCCTGTGTTGTATTTCTCTTCTGTTCAGATAAGCAGTCGATATGTCCTTCGTTGGTGTCATGGTTGGTTTTAAGACTCAGGAGGGAACCCGTTTTTCTCTCATCCTGATGCGCTCATACTTCACACTCATGCAGACACAGAGCATGCAGTCCAAGTGCTTCCAAACACCAGActgcttcctctctctctttatctgtctctcttttttgggAGGGTCTGTGGCAATCCAGCGCACTCGTATGCCTGGCCCTGTCTTGTCAGACATGATGTTTAGTGGTGGTTAAGTGcatttcttgtttcttttgttgttgttttttgttaaacaGGAGCTCACGGGTATATTTGATGCTCTATCATACCTCGCAATATTCTCATACTAGGGTTTTTAATTAGCGGGTAATCTAAACTGTGCTATCCGTGTCATCTGCCATACTGATCTCACTGTAACTCCAACGGCAAAGCTGAATAAACGGGAAAAATCTAAA

Function

symbol description
npas3 Is expressed in brain; head; and heart.

NR:

description
PREDICTED: neuronal PAS domain-containing protein 3 isoform X1

GO: NA

KEGG:

id description
K09098 NPAS1_3; neuronal PAS domain-containing protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253775.3 True 8117 mRNA 0.47 14 22857844 23154585

Neighbor

gene id symbol gene type direction distance location
akap6 akap6 coding upstream 13466 22711082 ~ 22844378 (+)
LOC103036290 psmc1,LOC108443803 coding upstream 165684 22686731 ~ 22692160 (+)
tonsl tonsl coding upstream 194717 22638733 ~ 22663127 (+)
edrf1 edrf1,LOC107729289 coding upstream 220051 22627304 ~ 22637793 (+)
LOC103037751 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding upstream 263487 22591569 ~ 22594357 (+)
srp54 srp54,LOC107729255,LOC107693187,LOC107733904 coding downstream 87586 23242171 ~ 23248849 (+)
sec23a sec23a,LOC107689296,LOC107589610 coding downstream 96075 23250660 ~ 23267862 (+)
clec14a NA coding downstream 154460 23309045 ~ 23312366 (+)
foxa1 foxa1,LOC106611236 coding downstream 210846 23365431 ~ 23368635 (+)
tyro3 tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 coding downstream 299416 23454001 ~ 23473086 (+)
G82515 NA non-coding upstream 306055 22549865 ~ 22551789 (+)
LOC111193141 NA non-coding upstream 448809 22393995 ~ 22409035 (+)
G82493 NA non-coding upstream 488888 22366240 ~ 22368956 (+)
G82487 NA non-coding upstream 501758 22355641 ~ 22356086 (+)
G82476 NA non-coding upstream 572503 22285063 ~ 22285341 (+)
G82583 NA non-coding downstream 9428 23164013 ~ 23165063 (+)
G82588 NA non-coding downstream 50230 23204815 ~ 23205444 (+)
G82596 NA non-coding downstream 53910 23208495 ~ 23208799 (+)
G82606 NA non-coding downstream 71180 23225765 ~ 23226910 (+)
G82748 NA non-coding downstream 318619 23473204 ~ 23473455 (+)
G82488 NA other upstream 499709 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 1184406 21520907 ~ 21673438 (+)
G81763 NA other upstream 3184206 19673127 ~ 19673638 (+)
G81761 NA other upstream 3191797 19665736 ~ 19666047 (+)
G81704 NA other upstream 3927090 18930238 ~ 18930754 (+)
G82609 baz1a other downstream 75845 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 720854 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 755097 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 984804 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 1741309 24895894 ~ 24924815 (+)

Expression


Co-expression Network