LOC103036290 (psmc1,LOC108443803)


Basic Information

Item Value
gene id LOC103036290
gene name psmc1,LOC108443803
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22686731 ~ 22692160 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253783.3
CCTGTGTGTGAAAGTATTTGCTCCTCCTGTCCAGTGAGAGGCGCCCGAGCTCTGAACACAGCCGGGCAGAAACAGCAGCGAATAATAAAGCACCATGGGTCAAAACCAGAGTGGAGGACATGGGCCTGGAGGCGGAAAGAAAGACGATAAAGATAAGAAAAAGAAGTATGAGCCTCCAATCCCCACTAGAGttggaaagaagaaaaagaggacaAAGGGGCCTGATGCTGCTAGCAAGCTGCCTTTAGTCACCCCCCACACACAGTGCAGACTAAAGCTACTGAAGCAGGAGAGGATCAAGGATTATCTTCTGATGGAGGAGGAGTTTATCAGAAACCAAGAACAGATGAAGCCACTGGAGGAGAAACAGGAGGAAGAGAGGTCAAAAGTTGATGATCTGAGGGGTACACCGATGTCAGTAGGAACCCTTGAAGAGATCATTGATGACAACCACGCCATAGTGTCTACGTCGGTCGGCTCAGAGCACTACGTTAGCATCCTGTCCTTTGTAGATAAAGACCTTCTTGAACCAGGCTGTTCTGTTTTACTAAACCACAAGGTACATGCAGTGATTGGTGTGCTGATGGATGACACGGATCCTTTGGTCACTGTGATGAAAGTAGAAAAAGCCCCTCAGGAAACGTATGCTGATATTGGAGGACTGGACAACCAGATTCAAGAGATCAAGGAGTCTGTTGAGCTTCCTCTTACACACCCGGAGTATTATGAGGAGATGGGAATAAAACCCCCTAAAGGAGTCATTCTCTATGGACCACCAGGCACAGGAAAGACCCTGTTGGCTAAGGCTGTGGCTAATCAGACATCTGCCACATTCTTGAGGGTGGTGGGCTCAGAGCTGATTCAGAAGTACCTGGGTGATGGTCCCAAACTGGTCCGAGAGCTCTTCAGAGTGGCAGAGGAACATGCTCCTTCCATAGTCTTCATTGATGAGATTGATGCAATAGGAACAAAGAGGTATGACTCAAATTCTggtggagagagggagattCAGAGGACCATGCTGGAACTCTTGAACCAACTGGATGGATTTGATTCCCGTGGAGATGTTAAGGTTATCATGGCTACTAACCGAATAGAGACTCTTGACCCTGCATTAATTCGTCCAGGAAGAATCGATCGCAAGATAGAATTCCCGTTGCCAGATGAAAAGACCAAGCGCAGAATTTTCCAGATCCACACAAGCAGGATGACTGTGGCTGATGACGTAACGCTGGATGACCTTATACTGGCTAAAGATGATCTTTCAGGCGCTGATATAAAGgCCATTTGCACAGAGGCAGGTCTTATGGCCTTGCGTGAGCGGAGGATGAAGGTGACGAATGAGGACTTCAAGAAGTCCAAAGAGAATGTTCTGTACAAGAAACAGGAAGGGACCCCAGAGGGCCTCTATCTTTAACTCCGCATGGCCTGCCAGGCTCCTGCCCTTCCaaactaaaaacacattttttttttatgttacgtTTACTTCTGTTTGAGCCAGCTGTTTTTTCACTCTTgtgcaaataaaagtatttcattTCCAGAGTATCTGTTAAA

Function

symbol description
psmc1 Enables RNA binding activity. Predicted to be involved in negative regulation of neuron death; positive regulation of proteasomal protein catabolic process; and protein catabolic process. Located in cytosol and nucleoplasm. Part of proteasome complex.

NR:

description
PREDICTED: 26S protease regulatory subunit 4

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253783.3 True 1557 mRNA 0.47 11 22686731 22692160

Neighbor

gene id symbol gene type direction distance location
tonsl tonsl coding upstream 23604 22638733 ~ 22663127 (+)
edrf1 edrf1,LOC107729289 coding upstream 48938 22627304 ~ 22637793 (+)
LOC103037751 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding upstream 92374 22591569 ~ 22594357 (+)
tmem179 tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383 coding upstream 551434 22130946 ~ 22135297 (+)
LOC103041179 NA coding upstream 558590 22111114 ~ 22128141 (+)
akap6 akap6 coding downstream 18922 22711082 ~ 22844378 (+)
npas3 npas3 coding downstream 165684 22857844 ~ 23154585 (+)
srp54 srp54,LOC107729255,LOC107693187,LOC107733904 coding downstream 550011 23242171 ~ 23248849 (+)
sec23a sec23a,LOC107689296,LOC107589610 coding downstream 558500 23250660 ~ 23267862 (+)
clec14a NA coding downstream 616885 23309045 ~ 23312366 (+)
G82515 NA non-coding upstream 134942 22549865 ~ 22551789 (+)
LOC111193141 NA non-coding upstream 277696 22393995 ~ 22409035 (+)
G82493 NA non-coding upstream 317775 22366240 ~ 22368956 (+)
G82487 NA non-coding upstream 330645 22355641 ~ 22356086 (+)
G82476 NA non-coding upstream 401390 22285063 ~ 22285341 (+)
G82579 eapp,LOC107733856,LOC107729290 non-coding downstream 435793 23127953 ~ 23194290 (+)
G82583 NA non-coding downstream 471853 23164013 ~ 23165063 (+)
G82588 NA non-coding downstream 512655 23204815 ~ 23205444 (+)
G82596 NA non-coding downstream 516335 23208495 ~ 23208799 (+)
G82606 NA non-coding downstream 533605 23225765 ~ 23226910 (+)
G82488 NA other upstream 328596 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 1013293 21520907 ~ 21673438 (+)
G81763 NA other upstream 3013093 19673127 ~ 19673638 (+)
G81761 NA other upstream 3020684 19665736 ~ 19666047 (+)
G81704 NA other upstream 3755977 18930238 ~ 18930754 (+)
G82609 baz1a other downstream 538270 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1183279 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 1217522 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 1447229 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 2203734 24895894 ~ 24924815 (+)

Expression


Co-expression Network