Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC103037751 |
| gene name | arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035905.1 |
| NCBI id | CM008308.1 |
| chromosome length | 42966623 |
| location | 22591569 ~ 22594357 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| arf6a | Predicted to enable GTP binding activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be active in endocytic vesicle; recycling endosome membrane; and ruffle. Is expressed in intestinal bulb; liver; and pancreas. Orthologous to human ARF6 (ADP ribosylation factor 6). |
| arf6 | Enables GDP binding activity; GTP binding activity; and thioesterase binding activity. Involved in several processes, including positive regulation of actin filament polymerization; regulation of Rac protein signal transduction; and ruffle assembly. Located in several cellular components, including Flemming body; cytoplasmic vesicle; and filopodium membrane. |
| description |
|---|
| PREDICTED: ADP-ribosylation factor 6 |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0031529 | ruffle organization | biological_process |
| GO:0035020 | regulation of Rac protein signal transduction | biological_process |
| GO:0051489 | regulation of filopodium assembly | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0060998 | regulation of dendritic spine development | biological_process |
| GO:0030838 | positive regulation of actin filament polymerization | biological_process |
| GO:0055113 | epiboly involved in gastrulation with mouth forming second | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0033028 | myeloid cell apoptotic process | biological_process |
| GO:0090162 | establishment of epithelial cell polarity | biological_process |
| GO:0030866 | cortical actin cytoskeleton organization | biological_process |
| GO:0034394 | protein localization to cell surface | biological_process |
| GO:0097284 | hepatocyte apoptotic process | biological_process |
| GO:0001726 | ruffle | cellular_component |
| GO:0030139 | endocytic vesicle | cellular_component |
| GO:0031527 | filopodium membrane | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005938 | cell cortex | cellular_component |
| GO:0010008 | endosome membrane | cellular_component |
| GO:0005525 | GTP binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0031996 | thioesterase binding | molecular_function |
| id | description |
|---|---|
| K07941 | ARF6; ADP-ribosylation factor 6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_007253788.3 | True | 2557 | mRNA | 0.44 | 2 | 22591569 | 22594357 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tmem179 | tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383 | coding | upstream | 456272 | 22130946 ~ 22135297 (+) |
| LOC103041179 | NA | coding | upstream | 463428 | 22111114 ~ 22128141 (+) |
| ubr1 | ubr1 | coding | upstream | 487918 | 22081687 ~ 22103651 (+) |
| exd2 | exd2 | coding | upstream | 536158 | 22047614 ~ 22055411 (+) |
| numb | numb | coding | upstream | 545139 | 22000613 ~ 22046430 (+) |
| edrf1 | edrf1,LOC107729289 | coding | downstream | 32947 | 22627304 ~ 22637793 (+) |
| tonsl | tonsl | coding | downstream | 44376 | 22638733 ~ 22663127 (+) |
| LOC103036290 | psmc1,LOC108443803 | coding | downstream | 92374 | 22686731 ~ 22692160 (+) |
| akap6 | akap6 | coding | downstream | 116725 | 22711082 ~ 22844378 (+) |
| npas3 | npas3 | coding | downstream | 263487 | 22857844 ~ 23154585 (+) |
| G82515 | NA | non-coding | upstream | 39780 | 22549865 ~ 22551789 (+) |
| LOC111193141 | NA | non-coding | upstream | 182534 | 22393995 ~ 22409035 (+) |
| G82493 | NA | non-coding | upstream | 222613 | 22366240 ~ 22368956 (+) |
| G82487 | NA | non-coding | upstream | 235483 | 22355641 ~ 22356086 (+) |
| G82476 | NA | non-coding | upstream | 306228 | 22285063 ~ 22285341 (+) |
| G82579 | eapp,LOC107733856,LOC107729290 | non-coding | downstream | 533596 | 23127953 ~ 23194290 (+) |
| G82583 | NA | non-coding | downstream | 569656 | 23164013 ~ 23165063 (+) |
| G82588 | NA | non-coding | downstream | 610458 | 23204815 ~ 23205444 (+) |
| G82596 | NA | non-coding | downstream | 614138 | 23208495 ~ 23208799 (+) |
| G82606 | NA | non-coding | downstream | 631408 | 23225765 ~ 23226910 (+) |
| G82488 | NA | other | upstream | 233434 | 22357644 ~ 22358135 (+) |
| ralgapa2 | ralgapa2,LOC107687934 | other | upstream | 918131 | 21520907 ~ 21673438 (+) |
| G81763 | NA | other | upstream | 2917931 | 19673127 ~ 19673638 (+) |
| G81761 | NA | other | upstream | 2925522 | 19665736 ~ 19666047 (+) |
| G81704 | NA | other | upstream | 3660815 | 18930238 ~ 18930754 (+) |
| G82609 | baz1a | other | downstream | 636073 | 23230430 ~ 23231318 (+) |
| timm9 | timm9,LOC107729247,LOC107693171,LOC107689314 | other | downstream | 1281082 | 23875439 ~ 23877770 (+) |
| G82811 | psma3,LOC107729246,LOC107725600 | other | downstream | 1315325 | 23909682 ~ 23973975 (+) |
| G82853 | tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 | other | downstream | 1545032 | 24139389 ~ 24142232 (+) |
| ephx2 | ephx2,LOC107733988,LOC107692411,LOC107653762 | other | downstream | 2301537 | 24895894 ~ 24924815 (+) |
