tmem179 (tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383)


Basic Information

Item Value
gene id tmem179
gene name tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22130946 ~ 22135297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253795.3
GTAGTGCCGCCTGCAGAGCTCCATCGCGCATGCGCACTGCCTGAGCTCCGGGGCTgattagcagcagcagtgcGAAAATGGCTAAAGATAATTTTATTTTCGCGCAGTGCATCCTGTACTTTCTAGCGTTCGTCTTTGGCTTCATCGCGGTAGTGCCTCTGTCGGAGAACACGGAGGACTTTCGGGGGAAATGTCTGCTGTTCACGCGGGGAATGTGGCAGAACGAGAACATCACAGTGTCCAAACAGCGCTTTATCATAGAGGAGTGGGGACCCCAGTCATCCTGCAGCTTCATCACTATCGTGGGCATCGCCTCTCTCGTGCTGTCCGCGGTTCAGGCCTGGAGACTGCTGTTCTTTATATGCAAAGGCCACGATGACTCCATATTCAATGCCTTCCTGAACCTTCTGATCAGCTCTTTCGTGGTGTTTGCCGTGTTTCTGTCCAGCACCATTGTAAGCGTGGGCTTCAACCTGTGGTGTGATGCCATTACTGAGGGGGGCAGCATGCCTAGCAGTTGTGAGGACTTGCAGGACACTGATCTGGAGCTGGGATTGGACAACTCTGCATTCTATGACCAGTTTGCCATTGCACAATTTGGATTATGGGCAGCTTGGTTGACCTGGTTGGGTATCACAGTCATGGCCTTCCTGAAGGTCTACCATAACTACAGGCAGGAGGACATGCTGGACAGCCTGATCAACGAGAAAGAGTTCCTGCTAGGCCGCTCCTCACGCCGCTCCTCTGACGTGGTGGATAAGAAAAGTGGCATGATCTGATCTTCTGTGGGGGAAACCCATGGGCAGTGGAGCAGAAGATCACTGGCTGAAATATGATGATTGAGATGAGACACAACATTCATCCACATGCACTGAAAtccagtggtgcttgaaagtttgtgaatctTTTAGGATTTTCTGTTTCTGCATAAAATTGACCTGAAActttttctggaaaaaaagaaccaaattaagcaaatgagacaaaaatagacgggtattttatttatttatatattttatatgttagtggcaaaagtatgtgaatctttgctTGCAATATCTGATGTGCAGCAATGACTGCAACTAAATGTTTCTGACAACATCCAATAATTAGTCCTGCACATTGGCATTATGTGTCTAATTTTCTACTTTTAGGACCTTTGTGAAATACTGATCAAATTTGAGATCAAATGTATGCTGAAACATAGAAAACTCAAAAAAAGGGGATCCCAAACTCAAGCACCACTGTAAGTGCTAAGATGATATAGCATAGAGGTTACAACAGCTTTTTTCTTAGGACTCAAAAAACTGCAACTTTTGGTAAAGCTGTAGTAACTCTATAGTATTAATCAAttcttaaaaacactgtttctgATACACTAGGTATAAATATTGCTCTTTTTAGACACATTTCCAACTAATATCTAGTTGTAAGTTTACTCTAGTTCTTATTACCTTGTCTTCAGTGACTTTAAAATGTGGATTACAGCTCAGTATACTCTCTATGTTTGTTTTACAGCCTACAATTTACAACCCAATTAGTTTCCCTTTTAGAGTCCTGGTGaataaatctaatctaatagtTAGAAACAGTATTTAAGTTAGATTTCAGTATACACACCATTTAATCCTGTATGGTTTACAGTACTGTACTCTCTTATCTTTCTCCCTGAGTTATATTCTTAGCTCGCTGCTATTATCTGTATGTTTATGCATATATGATAAATAAGATAATTCATGTACAGTTACATATGAGAAGGCAATATGCGATCTGTTatgctctgtccagctgtaTAAGTAGCTTGACATACATACAAGTACTAAACATAAATCCTGCACTTTcctaatgaagaccaaaggtgaagCATTAGGTTAAACTGCACTCTCTTTCAGATGAATTGCGCAGTGCATAGTGTCCATCAGTGTTActctttttattatgttatgtGGTGGTATGACAAACAGAGTATTTGCTGCATGCTGCAATaaaatgtggtgtgtgtgtgttttcagtatGAAACATTTCAAATAGCCAAATAACTCTTTTTAATCCTGtgagaatattttaaatttcatttttaaatgtgtttatgaaTTAATTTAGCAAACGCATGAATAATAATTTCAGTGTATGTTTGCAACACAGCCATATAAACACTTGACATCTCTGTCCTGTATGAAATACAGTCAATCTGTTATACCA

Function

symbol description
tmem179 Predicted to be integral component of membrane.

NR:

description
transmembrane protein 179

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253795.3 True 2205 mRNA 0.40 4 22130946 22135297

Neighbor

gene id symbol gene type direction distance location
LOC103041179 NA coding upstream 2805 22111114 ~ 22128141 (+)
ubr1 ubr1 coding upstream 27295 22081687 ~ 22103651 (+)
exd2 exd2 coding upstream 75535 22047614 ~ 22055411 (+)
numb numb coding upstream 84516 22000613 ~ 22046430 (+)
galnt16 galnt16,LOC107707671 coding upstream 135999 21956008 ~ 21994947 (+)
LOC103037751 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 456272 22591569 ~ 22594357 (+)
edrf1 edrf1,LOC107729289 coding downstream 492007 22627304 ~ 22637793 (+)
tonsl tonsl coding downstream 503436 22638733 ~ 22663127 (+)
LOC103036290 psmc1,LOC108443803 coding downstream 551434 22686731 ~ 22692160 (+)
akap6 akap6 coding downstream 575785 22711082 ~ 22844378 (+)
G82383 erh,ERH non-coding upstream 51896 22074542 ~ 22079050 (+)
G82336 tmem30a,LOC107581488,LOC107714749,LOC107571817,LOC104951461,LOC107687843,LOC107721815 non-coding upstream 249944 21880537 ~ 21881002 (+)
G82349 LOC108428626,LOC106610771,LOC105015763,LOC107687947 non-coding upstream 252205 21878055 ~ 21878741 (+)
G82345 NA non-coding upstream 261052 21868379 ~ 21869894 (+)
G82311 NA non-coding upstream 342006 21787174 ~ 21788940 (+)
G82438 NA non-coding downstream 3199 22138496 ~ 22141716 (+)
G82465 NA non-coding downstream 99206 22234503 ~ 22234891 (+)
G82476 NA non-coding downstream 149766 22285063 ~ 22285341 (+)
G82487 NA non-coding downstream 220344 22355641 ~ 22356086 (+)
G82493 NA non-coding downstream 230943 22366240 ~ 22368956 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 457508 21520907 ~ 21673438 (+)
G81763 NA other upstream 2457308 19673127 ~ 19673638 (+)
G81761 NA other upstream 2464899 19665736 ~ 19666047 (+)
G81704 NA other upstream 3200192 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 3609999 18511622 ~ 18520947 (+)
G82488 NA other downstream 222347 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 1095133 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1740142 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 1774385 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 2004092 24139389 ~ 24142232 (+)

Expression


Co-expression Network