ubr1 (ubr1)


Basic Information

Item Value
gene id ubr1
gene name ubr1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22081687 ~ 22103651 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253796.3
ACCAGCAGGCCCTCCTCCACTgtgccagcagcagcagcagcaggattcAGCTGAGGTCGCGTGCGTTACCGTGGTCACATCGCGCGCCGTAGTGAAACATGGCGGAGGGGGAGAAGTCGGTGGACGGGCTGCAGTTGAGCACGaAATGGTGGGAGGCCCCAGACCGCGGGGCTGCAATACTCAATTATATTGTGGAGCAGGTCCCCCATATTTATTGCCTGGAGGCTGAGCCACAACCAGCAGAAGAGGAACAACGAGTACAGGAACGCATCCTGCACCCACTGGAGTGCTTCCTGTTCGGAGAGGATCCGAGGGTTGGCTTGGAGAAACTGGAACATCGGAATAGTGGTTCATCCTCTCAGCTATGTGGACGTGTTTTTAAGGAGGGCGAGACAGTCTACTCTTGCAGgGACTGTGCCATTGATCCAACCTGTGTACTGTGCATGGACTGCTTTCAGAACAGTGTACACAAAGGACATCGCTACAAGATGCATGGTTCCTCAGGAGGAGGCTTCTGTGACTGTGGGGACTTGGAGGCGTGGAAGACCGGCCCCTGCTGCTCCCAACACGACCCCGGGACTTCTGTGGCCATGGAGACAgaCGACTGTGTCTTGGAGGCAGAACTGCTGGAGCGGGCCCAGATTCTGTTCCAGGTGTTACTGCAGTACTTCACTGACCTGATGGTTTGGGAAGAAGAAGATGAGCTCCCAGAAGAGATGAAGAATGGAATGGAGGAGGACACATACTATTGTGTCCTTTACAATGATGAGCAACATTCGTATGATCATGTGATCTACACGCTTCAGAGGGCCATCAGCTGTGACCACAAtgaagctcacacacacacagctctcatcGATAAGGAGGGGCGCAGAGCAGTGAGAAGAGGAACCCAGAGATCCTGTCAACAAGCTAAAGATCTTATCAGGTCAACTGCAGAGCAAATTACTCAGCAGCCTTTGCGAGTGGAGATTCTTCACTCAGCTCTGATGGCCCGTCAGACCTTTGCCCTCAGACTGGGACCTTGGTTTCAGCAGATCATTGGGTATTCAGtgggtttCAGGCAGGTGTTTTGCCAGGTGGCCCTGGAGGCCAGTGCTGACGGTGATAAACCCTGTTTGATTAGCACACTTATGCTCCATGACTCAAGACTCTACAAAGgAGCCCGTAAAGTTATCCATGAGATGATTTTCTGTAGTCTGCTGATGGAGACAGAATATAAGAGGCAGTTTGCCATGAAATTTACTGAGCACTATAAGCAGTTGCAGAAGGATTTCATCAGTGATGACCATGAAAGGAACATCTCAGTCACGGCCCTTTCTGTACAGATCTTCACTGTTCCCACTCTGGCTAGACAACTGATTGAAGAGGGTAGTGTGATAAAGGTGATCATAGACACAGTCATGGAGATGCTGAGGGAACATTTGGACAGCAACCAACGCTTCCATTTTCAGGGCTACAATTCTGACAAGTTCTTCCGTGTTCAAGTCATCTTCCATGACCTCAGGTACATCCTGATCAGTAGACCTGCCGTATGGACTGAGCAGTTGCGGGGAAAGTTCCTAGAAGGTTTCAGTGTCTTTCTGGGACTGCTTAACTGCATGCAGGGAATGGAGGAAGTGAAGAGGCAGTTTGGTCAGCACATTGAGGTGGAGCCAGAATGGGAGGCGGGTTTTTCCATACAAATTCAACTTCGCCACATTCTCTCGATGTTTCAGGACTGGTGCTCTTCTGATGAAAGAGTTTTGCTGCTAGCCTTCCAGGAGTGTCACAGGGCCCTGCTTCGCTGCACTAACCAGCCCTTCCACAGTGAGCCCACTGACAGCTACATGTGCAAACATATCCTCCATTCACGCCCATACAAAGTCTCCCAGGAGCCTGTCTCCATTCACTTGCCCATCTCCAGACTGCTGGCTGGTCTTTACGTGCTCTTGTGTCAGACAGGAGCTGTCACTTACCTCCCTGACTTTGTGGATCCTGAGCACTTGGACTTTTGTGCATTTGCAGAGCATTCTCTGCGCTGCGTGGTATTGGTTGCACAGGTGGCTGCTGAAATGTGGCGTCGAAATGGCCTCTCCCTTGTCAGCCAGGTGTACTACTATCAGGATGTGAAATGCAGGGATGAAATGTTTGATAAGGATGCCATCATGCTTCAGattGCTGCTTCCAAAATGGACCCAAATCACTTCATCATGCTTGTTCTTCTAAGATTTGAGCTCTTTGAGGTTTTTAATGGAAATTGCTCAAGTAAAGATCAGGACCTCTTGAAACAGTGGAACAGACTGACAGAAGAAATGCTGTACTTGTTGATCATCATCATAGGTGAGCGGTATGTTCCCGGAATCAGTATTGTGACTAAAGAGGATGTGACGATGAGGGAAGTGATTCATCTGCTGTGCATAGAACCCATGGCACACAGTAGTCTGGTCAAAGGGCTGCCTGAAAATGAAAGTCATGAAACTGGGCTTGAATCTGTTATCTCAAAAGTTGCCACTTTCAAgaaaccAGGAGTTTCCGGTCATGGTTTATATGAACTGAAGAAGGAATGTCTTAAGGAGTTTAATCCCTTCTTTTACCACTATACCAAATCGCAGCATAGCAAGGCTGAAGATGCACAGAAGAAGAGAAGGGCCCAAGAAGGGCTCGACAAAGCTCTTCGGCCCCCGGTACCACCTCCTTTTTGCCCCGCCTTCTCCAACATAGTTTGGCTGCTGTCCTGTGATGTGTTCATCCACGTGCTGAGGAGAGTACTGCAGAGAGCTGTGGAGGAGCGCTCCAGTCTGTGGAGTGAAGCCATGATTCAAAGAGCCTTGCATCTTTTAGGACAGGCATTGATTGAGGAGAAAACTCAGTTGGAAGCCAGTAATGTTGAAGAAGTGACATTTGATTTTAGTCACAAGGCTCGAAcaattGGCTCAGATCATAACAAGTCATTGTTCCATTTCCTGTCCAAAATGAAGACGTTGCCTTCTCTTGAAGCTCAGAAGGACATGATTAATTGGTTACTACAGATGTTTGAGATTGTGAAGTGCCTTCGTGAGAAATCTAGCCCTACTGCTTTGTGTGAAGTGGACCATGCTAAGCCTGAGGAGAGCGTTCAGGACAGAAAGAGGAAGGCTGAGGCTGCTAAGCTGCACAGGCAGAAGATTATGGCTCAGATGTCTGCAATGCAGAAAAACTTCATTGAGACTCACAAGATGCTGTATGACAATGTGCCTGAGAGCGGAGGCCAGGGAGAATCATCGACTTCAATGGAGAGCAATGCAATGGAGCTGGGGGAGAGACGTGTGGCGGTGGGCCCTCAGCAGGGAGTGTGTCCGGCAGACTGGGAAGCTCTTACCTGTATTCTGTGTCAAGAGGAGCAGGAGGTTCAGGCTCAGGCTCCAGCCATGGTCCTCACTGCCTGTGTACAGAGATCTACTGTCCTCACCCAGTACAGAGGCAGAACCCTGTCAACAAAAGAGAGCTCCTACCCTCTGTTCATGCCTCCTGATCTAGCTGTGGGCACACACACTGGGAGCTGTGGACACGTCATGCATGCCACCTGCTGGCAGAAatattttgAGGCCGTGCAGAACACCACTCGTAACAGGCTGCATGCTGAGATGATCATAGACCTGGAGAATGGAGAGTACATGTGCCCGCTCTGCAAGTCTCTCTGCAACACTGTGGTCCCACTGATACCCATGCAGCTCAACAAACTCAACTATGAGAGTGCAGAGTTGGTTGGCCAGGTCCTCACTCTTCCTCGTTGGATACAGATAGTGCTGGCTCGGATCAAAGGACTCAGAGCAGCACAAGAAGCTGACAGTGGTAGTGAAACAGCAAAGGAAGAAACTGGGTTCTTCGAGGATGGCCAAACTGACTTCAGGTCAATTCTCAGTTTTGGAGTTCAGCCACCGCCAAAGTATTCAAGCAGTATAACGGATATGCTGGTAGTGTGCGCCACTACGGTGCACAGGGTCGGTCTGCAGACTGCACCCAATGAAGTTTGCCCTCACGTGCCTGTCATGACCTGGAACACTTGTGCCTACACCATCCAGGCTACTGACAACATGTTGCAGGAGGAGGGAAAAGCTCTTTTTGGTTCTCTGCAGAACAGACAGCTGGCTGGTCTGAAAGCAGTGGTACAGTTCTCAGCAGTCCAGAGACTAAAGAGCTCACAAACTATCATACAGAAGCATTTTAGAGACATGCTGGCAGCCTTGCTACCTCTCCCTAATGCAGAAGAGACACCGTCAATATTAGAAATAGACTACTTTCATTTTTTGGTCGGACTCGTTCTGTCTATACCTGCTCTGTATCAAGAGGAGAATGTTGACCTGCAGCCTTCAGCAATCAGTACAGCTTACAATCATCTTCATCTAGTGCACTTAGTCACCATGGCCCATATACTGCAGGTCCTGCTGTCCTCACAAgATTCCAGTGCAATGATGGCAGTGATGGCAGGgggagaagaagaggaggaggccagagcagcagcagcactgtacTCTACTTTATCGCAGCACATAGAGGGtCTCAGGGCCAGTGTGACTGGTTCCATGATTgcagagagagtaaagagaggtGTTTTACCCTTTCTTCGCTGCGCTGCACTTTTCTTCAATTGCCTTACAGGAGTGCCCCCTCCAGAGGAGCTCTCCAGTACTGCAGAGTCCTCTGAGAGTCTGCTGCCCTATCTGTGTAGTTACCTCGCTTTGCCCTGCAACCTTTTCCAGCTCTTCCAGGATCACAGAGATACTGTAACTCCTCTAATACAGAGGTGGTGTGGAAATGGAGCCATATCAAAAGTCCTGAAGGGGGAAATGAGCACAGTCAGGTATCCAAGGAATAGAAACAGGCTGATCAATCTTCCTGAAGACTACAGCATACTGCTCAATCAGGCCAGTCATTTTAAGTGTCCAAAGTCTTCGGACGATGAGAGGAAGCACCCGACGCTCTGTCTGTTCTGTGGCACCATGCTTTGCTCTCAAAGCCCTTGCTGTCAAGTGCAGCTGGACGGGGAGGAGGTGGGCGCTTGCACAGCCCATGCTGCCACCTGCGGGGCTGGGGTGGGCATGTTCCTCAGggtgagagagtgtgagattgTTTTGATGGCCAGTAGGACACGTGGAAGTACATATCCGGCTCCTTATCTTGATGACTATGGAGAGACAGATCCTCAACTAGGACGTGGGAACCCCCTGCACCTCTGTCCTGAGCGCTACAGGAAGCTGCACCAGCTGTGGCAGCAGCACTGCATTCTTGAGGAGATTGCCCGCAGCTTGGAGGTGCATAACGTCATGTTCGCCTTCGAGTGGCAGATGCTCTGATGCTCTGAGCTCAGGTTTGGTCAGAGTGGGCCTGCAGAAAGATGGCTAATGGACTCCAGGAGGGACCGCCCTTTCCCACAATCTCTGTTCAGTTCTTTCACGCAGTCCGATTTCCTCTGTTCCAGTAAAGAGTAGATGAACTGAAGGGTAGTGACCCAGGATATGTAGGAGGGTGGGATGTACTTTTGGTCTTCTGTTCATTTAATTTTGGCTTAGagttctttttgttttcttttatactttttaaggATTCACTTGGCCTGCGTAAGCCAGTTATTGTAAAACAAGGAAAAGACATTGCACATGTAGCTTTTATTTTCCTTCTCTTGAGCTTGAAGTGTTTCCATGAGTAAGTAATGAAGTCTTCATGCATTGTTTTTGAAAACTGGAGTAAGGCCATGTTGTATTGTCTTACTTGTGTACGCACCTTCTGCGGAAaatgttttctgttctttttgcaCTTGTGCTTAAATGCTATTATACATATCCTGTCCTCCTCTTTGGACTTGTCACCCCTACTCTCTACTGTGTGGAAAAACTGTATCAGTGTTAATATATCATAccaatatatgaatatattatacagaGAACCTCTATATAAAA

Function

symbol description
ubr1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process via the N-end rule pathway. Predicted to act upstream of or within protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Johanson-Blizzard syndrome. Orthologous to human UBR1 (ubiquitin protein ligase E3 component n-recognin 1).

NR:

description
E3 ubiquitin-protein ligase UBR1

GO: NA

KEGG:

id description
K10625 UBR1; E3 ubiquitin-protein ligase UBR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253796.3 True 5918 mRNA 0.49 47 22081687 22103651

Neighbor

gene id symbol gene type direction distance location
exd2 exd2 coding upstream 26276 22047614 ~ 22055411 (+)
numb numb coding upstream 35257 22000613 ~ 22046430 (+)
galnt16 galnt16,LOC107707671 coding upstream 86740 21956008 ~ 21994947 (+)
vps39 vps39 coding upstream 133496 21927566 ~ 21948191 (+)
tmem87a tmem87a coding upstream 155314 21914226 ~ 21926373 (+)
LOC103041179 NA coding downstream 7463 22111114 ~ 22128141 (+)
tmem179 tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383 coding downstream 27295 22130946 ~ 22135297 (+)
LOC103037751 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 487918 22591569 ~ 22594357 (+)
edrf1 edrf1,LOC107729289 coding downstream 523653 22627304 ~ 22637793 (+)
tonsl tonsl coding downstream 535082 22638733 ~ 22663127 (+)
G82383 erh,ERH non-coding upstream 2637 22074542 ~ 22079050 (+)
G82336 tmem30a,LOC107581488,LOC107714749,LOC107571817,LOC104951461,LOC107687843,LOC107721815 non-coding upstream 200685 21880537 ~ 21881002 (+)
G82349 LOC108428626,LOC106610771,LOC105015763,LOC107687947 non-coding upstream 202946 21878055 ~ 21878741 (+)
G82345 NA non-coding upstream 211793 21868379 ~ 21869894 (+)
G82311 NA non-coding upstream 292747 21787174 ~ 21788940 (+)
G82438 NA non-coding downstream 34845 22138496 ~ 22141716 (+)
G82465 NA non-coding downstream 130852 22234503 ~ 22234891 (+)
G82476 NA non-coding downstream 181412 22285063 ~ 22285341 (+)
G82487 NA non-coding downstream 251990 22355641 ~ 22356086 (+)
G82493 NA non-coding downstream 262589 22366240 ~ 22368956 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 408249 21520907 ~ 21673438 (+)
G81763 NA other upstream 2408049 19673127 ~ 19673638 (+)
G81761 NA other upstream 2415640 19665736 ~ 19666047 (+)
G81704 NA other upstream 3150933 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 3560740 18511622 ~ 18520947 (+)
G82488 NA other downstream 253993 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 1126779 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1771788 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 1806031 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 2035738 24139389 ~ 24142232 (+)

Expression


Co-expression Network