exd2 (exd2)



Basic Information


Item Value
gene id exd2
gene name exd2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22047614 ~ 22055411 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007253811.3
AGGGTTTAATTGGATTTTCTGAGGCTAAATTGCAGGATAGAAAGATTGGTTGTAAAACTTTAGAAATAGACAAATTCTGTAACACTACTTGTATACGCGTGGCACTGGCTGATGGGGGCGCTGTGGGGAGATATAGAGGCGGAAGAAGAAGCGCTGCAGCTGTTCATTATCCTAAAccacagagagtgtgtgtgtttaagtgagagagaagagaagagagtgtgcagttttatttatttaggttatagagtgtgtgtgtggataacAGCGCTCACAGCTGCGGAGAACTGCTGAAAAGTTCAAAGATGTCCAGACAAAGTACCTTCACTGCAGCACTGGCAACCATGTTAGGAGCTACGCTCGGAGGCCTTTTCCTGTGgcacaccatatacacacagAAGAGAAAAGCCCTGAAAACGCCCCAAAAGCCTGACCCATTGCCTGTGGAGCAGCTTAGACCTGTGGAACTTAGTACAGCTCCAGTACAGAATTCACAACAAAAGCCCACACCTCtgccaccaccactaccaccaccaccaaaaaCTACAAGACGTATTTCAATACCAGCTATTGAGAAGTTGCTTAAGGTGCCAGCGGTGGTGGTGAGCTCACCCGAAGAATGGGAGGAACACTGGCCATCGTTCCAAAAAGACCTGGCCATCTTTCCTGTCCTGGGTTTGGACTGTGAATGGGTAAAGAGCATGCGTGTGTCCAACAAAGGGAAAGCATCTGCGGTCTCTTTGCTCCAAATGGCTACATATTCTGGCCGCTGCATGCTGGTCAGACTGCTGGCATTTCGCGATGCCCAGCTGTCTCTGCCCAAAGGCCTGCTACAGGTCCTGCGGGACCCTCATGTGATGAAGGTGGGGGTTGGCTGTTTTGAGGATGGCAAGCGCCTGGCCCATGACCACGGCCTGGCTCTTGTGTGCACGGTTGATTTAAGATACCTGGCCCTGAGACAAAGGCATGCAGTGCTAAATAATGGACTGAGTCTAAAGTCCCTTGCTGCAGACCTACTCAACGTTACCCTGGACAAATCACTGGAGCTGCGATGTAGTAACTGGGAGGCTGAGCACCTAACCCAGCAGCAGATGGTGTACGCAGCACGTGATGCCCAGGTGTCCATTTCCCTATTTCTCTACATGCTGGGCTTCCACTCTGAACCCTGCATCTTAAGCGACAGTGAGACCCCCTACTCAAAGCTGGCTTCGTCCTGCCAGGGTCTCATGGATGTACCTTTCAGGACACGCAGTGAAGGAGACGAGGGTGAGCGCAGGCGCAGGAACCGCAGGTCAACTGTGGACAGTCCCGAGTCTGGAGACCAGCAAGTACCAGACCCTCGCAGAAACAAACGCAAGCCTCTTGGGGTTGGATATTCAGCCAGGAAATCCCCCCTGTATGATAACTGTTTCCTTCATGCACCTGATGGCCAGCCACTCTGTACATGTGACAAGAAAAAGGCGAAGTGGTACCTTGACAAAGGAATAGGAGAGCTGGTCAGCGACGAACCCTTTATTGTGCGTCTGCTGTTTGAGCCATCAGGCCGTCCCGACTCACAGAAGGACTATTATCTTACGGCAAAAGAaaatctgtgtgtggtgtgtggaaaAGCAGAGTCCTACATCAGAAAGAACATTGTTCCACATGAATACAGACGCCACTTTCCAGCCGAGATGAAGGACCACAACTCTCATGACATTCTGCTGCTGTGCACTTCCTGTCATGCAGCGTCCAATGTTTATGATGGCTTCCTGAAACAGCAGCTGGCTGATGAGTTCTCTGCCCCTCAGGGCTGTGAGGAGGGGGTGAGGATGCTGGAAGATTCGGACCGACGGCGGGTTCGCTCTGCTGCCCGTGCCCTCCTTAGCGCTGGAGAGAGCATGCCAGAAACCAGACGAGACGAGCTCCTGTCAGTCATCTGCACTTTCTACTCCGAGAACGAGAAAGACGAGGTCACAGAGGACAAAGACAAGGTCACAGAAGAAATGCTGCAGACCGCTGCCAACCTGGAGACcagGATATTTAATGAGCAGTACATCCCCCACGGGTTGAAGGTGGTGCGGGCGTACGCTGAACACGGGCTGCAGGGTCTGATTGACCTAGAGCGCCGCTGGCGCCAACACTTTCTGTCTAGTATGCAGCCCAGCCACCTGCCCCCTCTATGGTCTGTGGACCACAACCACGAGAAGTACCTGCGCAAGTACGGAAAAGACCTGGTGATCAACCTAAACTGACGGTCCACCCCTCCTCTCTTGTGCTCATCTTTTGCACGCCAGACTTTGCAGTGTCTCCCTGCAGGTAGGAGGGTCACTGCGGTGTGGGTTGGACCCGGGTGGTCTCAGCCACAGACCTGTGatgtcatttcagtgtgttcCAAAGAGAAAAGACTTGGCCACCGTATGAGCTTGAGCCTAGCAGTAGTGCAGATATTGGCTGTAGATGAACTGAAGAGAAAAACAAGAGGCTCTCAGACCTGGACCCAGAAGTCACTGTGGTGAATGACGAATCACTAAGCAAGAAGATggagtaaaaaaatgtaaaaaaggaagATGAGGGTTAAAGACATTTAAGTGCACACTcatttagaaaaagaaaaaaagagaaatatttgTGGTTGGAGAAGAGTTCTCAGCTTTTCAGAAAatgaaatttatatattttaagcagcCCAAACCTGCCCCTAATTTCTTaaatataacttaaaataaaaaatagagtaTACATTTAATGCAGGTTTGTGGccctattaaatattttgaataaGTGTGTGGTGAAATCAGCTGTTTTGCCTTATGAGGTTCTTTGACTGTGGTCCTAATGCACCTTTTTTGCCCCATGTCTGAATTACGGTTACACTATTTGTCAGTCTTTTATAATAGATTTGACAAAACTATAAACTGGACACCCCTTTATGGTTAACTCACATGTATGGTTTTTGGAACCTTCTAGGCTCTCTGGTTTATGAATCTTTTACTAGTTTGAAAGTAAGTATGAAAGGATTTGAccgctccttttttttttttgtatttctcaaCGGTCCCTAGTCAGTCAGGACACCTCTAACCATTTTAAACCCCTGACTTAACCAGAGAAACATACATTATTAGGCCTAATCTGAAACTACAACAGGATCTTGTTGATTTAGTGTGTAACAAACTTAAGGATGTAAAGGTTCAAACGACCAGAGAGATTTGGCTCCATGAGCAATAAAAATGCAGATTATCTGGAAACTTTTGATCCTTTAGGAGGACACTGATTTCCACATTTGAGCACAGAAAATACTTTAGATTTGACTGAAGAAACACTACAGTTTGtcctttttatttacatttatccaGATGTAACCCCACTAAAAGCTGCTGTGTTTCCCTAAACAGTTAATAAAagtgaattatttaatgttaaaa
>XM_007253812.3
ACAGGAGGGTTTAATTGGATTTTCTGAGGCTAAATTGCAGGATAGAAAGATTGGTTGTAAAACTTTAGAAATAGACAAATTCTGTAACACTACTTGTATACGCGTGGCACTGGCTGATGGGGGCGCTGTGGGGAGATATAGAGGCGGAAGAAGAAGCGCTGCAGCTGTTCATTATCCTAAAccacagagagtgtgtgtgtttaagtgagagagaagagaagagagtgtgcagttttatttatttaggttatagagtgtgtgtgtggataacAGCGCTCACAGCTGCGGAGAACTGCTGAAAAGTTCAAAGATGTCCAGACAAAGTACCTTCACTGCAGCACTGGCAACCATGTTAGGAGCTACGCTCGGAGGCCTTTTCCTGTGgcacaccatatacacacagAAGAGAAAAGCCCTGAAAACGCCCCAAAAGCCTGACCCATTGCCTGTGGAGCAGCTTAGACCTGTGGAACTTAGTACAGCTCCAGTACAGAATTCACAACAAAAGCCCACACCTCtgccaccaccactaccaccaccaccaaaaaCTACAAGACGTATTTCAATACCAGCTATTGAGAAGTTGCTTAAGGTGCCAGCGGTGGTGGTGAGCTCACCCGAAGAATGGGAGGAACACTGGCCATCGTTCCAAAAAGACCTGGCCATCTTTCCTGTCCTGGGTTTGGACTGTGAATGGGTGTCCAACAAAGGGAAAGCATCTGCGGTCTCTTTGCTCCAAATGGCTACATATTCTGGCCGCTGCATGCTGGTCAGACTGCTGGCATTTCGCGATGCCCAGCTGTCTCTGCCCAAAGGCCTGCTACAGGTCCTGCGGGACCCTCATGTGATGAAGGTGGGGGTTGGCTGTTTTGAGGATGGCAAGCGCCTGGCCCATGACCACGGCCTGGCTCTTGTGTGCACGGTTGATTTAAGATACCTGGCCCTGAGACAAAGGCATGCAGTGCTAAATAATGGACTGAGTCTAAAGTCCCTTGCTGCAGACCTACTCAACGTTACCCTGGACAAATCACTGGAGCTGCGATGTAGTAACTGGGAGGCTGAGCACCTAACCCAGCAGCAGATGGTGTACGCAGCACGTGATGCCCAGGTGTCCATTTCCCTATTTCTCTACATGCTGGGCTTCCACTCTGAACCCTGCATCTTAAGCGACAGTGAGACCCCCTACTCAAAGCTGGCTTCGTCCTGCCAGGGTCTCATGGATGTACCTTTCAGGACACGCAGTGAAGGAGACGAGGGTGAGCGCAGGCGCAGGAACCGCAGGTCAACTGTGGACAGTCCCGAGTCTGGAGACCAGCAAGTACCAGACCCTCGCAGAAACAAACGCAAGCCTCTTGGGGTTGGATATTCAGCCAGGAAATCCCCCCTGTATGATAACTGTTTCCTTCATGCACCTGATGGCCAGCCACTCTGTACATGTGACAAGAAAAAGGCGAAGTGGTACCTTGACAAAGGAATAGGAGAGCTGGTCAGCGACGAACCCTTTATTGTGCGTCTGCTGTTTGAGCCATCAGGCCGTCCCGACTCACAGAAGGACTATTATCTTACGGCAAAAGAaaatctgtgtgtggtgtgtggaaaAGCAGAGTCCTACATCAGAAAGAACATTGTTCCACATGAATACAGACGCCACTTTCCAGCCGAGATGAAGGACCACAACTCTCATGACATTCTGCTGCTGTGCACTTCCTGTCATGCAGCGTCCAATGTTTATGATGGCTTCCTGAAACAGCAGCTGGCTGATGAGTTCTCTGCCCCTCAGGGCTGTGAGGAGGGGGTGAGGATGCTGGAAGATTCGGACCGACGGCGGGTTCGCTCTGCTGCCCGTGCCCTCCTTAGCGCTGGAGAGAGCATGCCAGAAACCAGACGAGACGAGCTCCTGTCAGTCATCTGCACTTTCTACTCCGAGAACGAGAAAGACGAGGTCACAGAGGACAAAGACAAGGTCACAGAAGAAATGCTGCAGACCGCTGCCAACCTGGAGACcagGATATTTAATGAGCAGTACATCCCCCACGGGTTGAAGGTGGTGCGGGCGTACGCTGAACACGGGCTGCAGGGTCTGATTGACCTAGAGCGCCGCTGGCGCCAACACTTTCTGTCTAGTATGCAGCCCAGCCACCTGCCCCCTCTATGGTCTGTGGACCACAACCACGAGAAGTACCTGCGCAAGTACGGAAAAGACCTGGTGATCAACCTAAACTGACGGTCCACCCCTCCTCTCTTGTGCTCATCTTTTGCACGCCAGACTTTGCAGTGTCTCCCTGCAGGTAGGAGGGTCACTGCGGTGTGGGTTGGACCCGGGTGGTCTCAGCCACAGACCTGTGatgtcatttcagtgtgttcCAAAGAGAAAAGACTTGGCCACCGTATGAGCTTGAGCCTAGCAGTAGTGCAGATATTGGCTGTAGATGAACTGAAGAGAAAAACAAGAGGCTCTCAGACCTGGACCCAGAAGTCACTGTGGTGAATGACGAATCACTAAGCAAGAAGATggagtaaaaaaatgtaaaaaaggaagATGAGGGTTAAAGACATTTAAGTGCACACTcatttagaaaaagaaaaaaagagaaatatttgTGGTTGGAGAAGAGTTCTCAGCTTTTCAGAAAatgaaatttatatattttaagcagcCCAAACCTGCCCCTAATTTCTTaaatataacttaaaataaaaaatagagtaTACATTTAATGCAGGTTTGTGGccctattaaatattttgaataaGTGTGTGGTGAAATCAGCTGTTTTGCCTTATGAGGTTCTTTGACTGTGGTCCTAATGCACCTTTTTTGCCCCATGTCTGAATTACGGTTACACTATTTGTCAGTCTTTTATAATAGATTTGACAAAACTATAAACTGGACACCCCTTTATGGTTAACTCACATGTATGGTTTTTGGAACCTTCTAGGCTCTCTGGTTTATGAATCTTTTACTAGTTTGAAAGTAAGTATGAAAGGATTTGAccgctccttttttttttttgtatttctcaaCGGTCCCTAGTCAGTCAGGACACCTCTAACCATTTTAAACCCCTGACTTAACCAGAGAAACATACATTATTAGGCCTAATCTGAAACTACAACAGGATCTTGTTGATTTAGTGTGTAACAAACTTAAGGATGTAAAGGTTCAAACGACCAGAGAGATTTGGCTCCATGAGCAATAAAAATGCAGATTATCTGGAAACTTTTGATCCTTTAGGAGGACACTGATTTCCACATTTGAGCACAGAAAATACTTTAGATTTGACTGAAGAAACACTACAGTTTGtcctttttatttacatttatccaGATGTAACCCCACTAAAAGCTGCTGTGTTTCCCTAAACAGTTAATAAAagtgaattatttaatgttaaaa

Function


symbol description
exd2 Predicted to enable 3'-5' exonuclease activity. Predicted to act upstream of or within nucleobase-containing compound metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human EXD2 (exonuclease 3'-5' domain containing 2).

NR:

description
exonuclease 3'-5' domain-containing protein 2

GO: NA

KEGG:

id description
K20777 EXD2; exonuclease 3'-5' domain-containing protein 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007253811.3 True 3407 mRNA 0.47 9 22047619 22055411
XM_007253812.3 False 3397 mRNA 0.47 9 22047614 22055411
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Neighbor


gene id symbol gene type direction distance location
numb numb coding upstream 1184 22000613 ~ 22046430 (+)
galnt16 galnt16,LOC107707671 coding upstream 52667 21956008 ~ 21994947 (+)
vps39 vps39 coding upstream 99423 21927566 ~ 21948191 (+)
tmem87a tmem87a coding upstream 121241 21914226 ~ 21926373 (+)
gpr68 LOC108425668 coding upstream 751358 21282603 ~ 21296256 (+)
ubr1 ubr1 coding downstream 26276 22081687 ~ 22103651 (+)
LOC103041179 NA coding downstream 55703 22111114 ~ 22128141 (+)
tmem179 tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383 coding downstream 75535 22130946 ~ 22135297 (+)
LOC103037751 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 536158 22591569 ~ 22594357 (+)
edrf1 edrf1,LOC107729289 coding downstream 571893 22627304 ~ 22637793 (+)
G82336 tmem30a,LOC107581488,LOC107714749,LOC107571817,LOC104951461,LOC107687843,LOC107721815 non-coding upstream 166612 21880537 ~ 21881002 (+)
G82349 LOC108428626,LOC106610771,LOC105015763,LOC107687947 non-coding upstream 168873 21878055 ~ 21878741 (+)
G82345 NA non-coding upstream 177720 21868379 ~ 21869894 (+)
G82311 NA non-coding upstream 258674 21787174 ~ 21788940 (+)
G82270 NA non-coding upstream 326236 21720629 ~ 21721378 (+)
G82383 erh,ERH non-coding downstream 19131 22074542 ~ 22079050 (+)
G82438 NA non-coding downstream 83085 22138496 ~ 22141716 (+)
G82465 NA non-coding downstream 179092 22234503 ~ 22234891 (+)
G82476 NA non-coding downstream 229652 22285063 ~ 22285341 (+)
G82487 NA non-coding downstream 300230 22355641 ~ 22356086 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 374176 21520907 ~ 21673438 (+)
G81763 NA other upstream 2373976 19673127 ~ 19673638 (+)
G81761 NA other upstream 2381567 19665736 ~ 19666047 (+)
G81704 NA other upstream 3116860 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 3526667 18511622 ~ 18520947 (+)
G82488 NA other downstream 302233 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 1175019 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1820028 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 1854271 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 2083978 24139389 ~ 24142232 (+)

Expression


exd2(exd2) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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exd2(exd2) Expression in each Bioproject

Bar chart with 7 bars.
exd2(exd2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 175.
End of interactive chart.

Co-expression Network