c9h2orf71


Basic Information

Item Value
gene id c9h2orf71
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33061183 ~ 33071966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257287.2
GTCCACGCTCAAATCCACTCTAATCCTTTCAGCTGCTCATCCTCCACAAGGACACTACCTTGTTGCACAAACTGCGCAATACTGCTGCTTCAAGAAGgctcaaaattatttttttctggattaTAAAATAAGTGACTTTTCTTTGGGGACACTTCTCAGAATGTACCTTTCTTTTTATGCCTAACAGTCCGCGTGATTGCCAAGGACAAGTACAAACTGTCAAATGCAGAGTGATACTGGGCTTAGTGACAAGTGCAGCTGTCGGGTAAGGCTCTGAGACCTTCTCATTTCAGATGGAGCTCCTCATCAATTTGTCCCTGTTGGattctttattttctgtttgaaAAACTATAAATAGAGGCTGCTTTTGAAATGGGCTGTTCCCCGTCTAGGGGAACTACCTATAGTGGAGCGTATGGACCATTCAGGAAAGGAAAAACATTGCTGCCTGGAACCAAAGAAAGCCCAGGAGACTCGCAATCTGATGACGGTGGAAGTGGAAGCTCTATTGGTGGTGAGACAGATGACGGTGCCTGTAAAAGGACAGGAGAACAAAAGAAACTAAACAATTATGGAGATACAAATACACCTTCTTCAGCAAAGAAACTTTCCACTGCTGAACCTGGGGTGGCAACAGTTGCCTCAGAGAAATTGGGCACCCAAGagattacaattagtttattatccCAGACCAAAGAGAAACAAGATGAAAAGAAGGATGAGAAGAAGGGCACAAAGAAGCCGAAGAAGAGTCTGAAAGGTGTAAAACCAAacaagaagaaggagaaggacAAAAAAGCTGCTGTCGAGGAAAAGGTGGACTTTCCAGAGCCTCTTGTGAAAGCCCATCAAGCAGCTTATGGATATCTCAATCCTAGTATTGCCAAATATGAAATTCTGTTGAGTTTACTAGATCATGCAGCTCAGACCCAAATTTCTTTACAACCCATGGTTTCGTTCATGGCACTGTGCTATGAAGAGATCAACCGAGGGCTGGAGGAAATGGTTGAAGAGGGGGAAAAGCTTTTAAAGGAGAATGGGGAACATTTGGCTTGGCCTTGCAAGATGAAAAATCTGTCTTCATCCAGCTCCTCCACTGAACCCCCACCAGACCTGCTGCAACAATTACTTCAGTACACTGTTCAGAGGATGCGTGTTGTTGGGCAGTCGGTAAGTGGAATCAGCGACACAGCCCTTGAAGAGGCGGTAGATTATTTTTCGTCTATATGTgaagttctggaaaaaaaactgaggGCTAAACGTGCCTGTGAGGCTAAGCTAATGCAGTTGCTAACTAAGATTGAGGTTGCATCCTTACGAAGACCAGGACCAGAGGACTCAGCCTTGTTTAGTGAAGACAGTGGCATTGGGGTGGAGAATGAGTCACTAGCAGGATCAGAGAGACAACGCCGCCGAAGGGAAAGCTGCGAGTCAACTGGGTCTAATTGCACAATTCTGTGCAGTCCTGGAAGCACAACACCAGTCCGTCTGAGTTCCTCAAAGCGACTGCTTAccaaaaaaatgagcaaaagcAGCTCTATCAATTCAATTGATTCAACATGTACCCTTACAGGCAAAGAATCCAGAGACACCGAATCATTGCTTGGCTCTACCTCCTTGGACGATGGTGAGGGAGATGAAGAAGAGGGTACTGAAGAGGCCAGTGAGGGAGAACACTGTGAGGGTAAAACCAGAAAGCGATCAAGTTCTTCTCCTGCAGACCCTGCACAACAACCACGGCGCCTTCCTGCAAAGCGAATAGAGAATCCACAAAATGTGGAAATGACCTTAAAGATGAAAGATGCAATCAGTGGCCGCATTCACTTTCTTCCCTCTCAGCGCTCTGGAATAAAGACTGGAAAGACTGGGAGCCCAAAGGTTGGTGACCGGCAGTGGACAGAAGATGGAGAAAAAAGCCCCAAGAGGCCACAAACGGCTTCTTCTCAAGCACCTAAGAAGAAAGCCACAGCCGCTAAACAATGCCGTTCAAGATCAGCAGAATCCCTTCGCAACAAAGCTGAAGACCCTACGCTTTTTGAACTGGAAAGGACACAAAAAGAATTAAGCCAGAGGTTGGAGCAAATGCGAAAGGTCAGGTTTGAAGGAAACATAAAGAAAGACTTTCCTAAGCAGCTGTTAGAACAGCAGACACACCCTGGGTCACCAAAACTAACAGGGAAATTGCAACCTTTGAATAAAAACCCTGACTCTCCATCCATTCAGAGAAAGACAGTTGGTTTAAAACAAGTCACAGCAAAGCAAGAGGCTGTGAAAGAAAAGGATGAAAAGgatgaaaagaagaaaaagtctAAAACTGTTAAGGGGCCCTTGAAGCCAACACCTCCTCCAAGTCCACCAATATCACCACAACCAGTGGGAATGGGAGGGAACTCTGTCAAAAAACTGATTGATACCTTTAGTCAGGGAATGGAGGACAGTAAACATATCCATGACAGCACAAAGGTACTTGGACCACTTAAAGGGGTCAGAAAGTGTGGCGTTCCCATCATTCCAGGTTTAGGCAGTACATACTATGAaaacgatgatgatgatgatgtaaaCCGAGAGGAATCAGGAACCTCTGCGAGGACAGATGATCTTGATTTGGACAACCTACCCCCACCCCCTCCAGAGGTCCTCATGGATAACTCTTTTGAAAATTTTGAAGCTACCAAAACAGAGGAAAGTGTATCCAGAAGAGGTCGATCAACCATCCCAAAGAAGACAAGCATTTCTCAACGGCTTCGTGCCTCAATGCAATCTGTTGCAGTACTTCCTAGCAAAGGCAATGTAAGGAAAAGCTCTCATAGCATGTCACCAGCACGTACTGTTCCACAGGAACTCAGAGCAGTGGTTAAAAATACTCAATTCGATTCCAAAGCTGAAGCAGAGCTGGAGAATGAGGAGGCTGCCTCGCTTTACAAACAGGCACGGAAAATAATCCATTTGCGGAACGCCACTGCCTCTCCAATAGAGAAGCTTGCAATCGAAAGTGACAGCATCAAAACTTGTCTTACTCAACAGAATATGGAAAAGAAACAGGAAGAAAACAGCACCCCTGAAACAGTGCCTTCCACTTCAGTAGGTCCAGTAGGTCAAGGAGGTCCAGTAGGACCTGGAGGTCAACCACCTGCCACTCCACCTGTGTCCAAAACCCGCATGTTACCTTCCACACCTGTTTTACATAGACGGCTTCCCAGTCCCCCTGTCTTTAAAAAGCAGCCAGTTCACCCAACCCCAAGTCCACCAGTCTTTCGCAAACTTCCAACTCCCCCACCAGCCGGCCAACGGACACTTCCCACCACCCCTAACATGCGGCAAGAAACCACCCCAAGTTCTGCAAGTTCTACGTCTATAGTCACCTACCCTTTCAAAGCACCATCTCCTCCTGCCTCGCCAAAAGTGCAGCGCTGGTCtcaagaaaacagtaaagaggACTCTACTTCCAGAGTATTTAGCAATGCTCGTTCAGTATTTTGTCCAGCCTCACCATCTTTGTTTGAAGCACAACCCTTCCCTGTGCCTAAGCCCCCGCAGGCATGGACTTCCACTGGCAGCAGCATCCTGCCTCGGCCTTGGGGTGAGCGCGGCAGGCTGCCTATGTCCATTCGAGGACCCCAGCCTTTCATTCGGCGTAGCCAGTCTGACAGGAGGCCTAGTCTAAGCTTTCCACCAAGAGCACCAGTCATATCTGTTGCACAGACTTGTGGAAGTGAGCCAGCCATTAGCACCCAAGGGTTGGAGGACGGTCCAATGGGAGAGCTGGAGCCGTGGAGCGAGCAGACTGAGCTCAGAGGAGCGAGCCGCTCTGCCTCGCACCCAGACCTGTGCATCGTGGGTCAGGCCTTACAGCGCGAGTGACAGACCTGCAGAAGAGCAGGCAGGATTATGGATTAGCTGGCCTAGGTGGGATTAAGGCCATTTTTTTCCACTGGGAAGGGGAGATTGACTAACACTGGGAAAGCCTCTTTACTGGTACTGCTACTTCTTCCCACCTCCTGTTGTCAttggagttttttttagcactttttttgcactttttttttaaaggtgggGGTACACACAGAGGGTTAAGCACgtttttctaattatttaaatgactttttactAATTCCAATGTATGcgcatgtatttttatttttgttttgtaaataaataaataaaatgtatatcatCACTGCTATTGACACCA

Function

GO: NA

KEGG:

id description
K24165 PCARE; photoreceptor cilium actin regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257287.2 True 4192 mRNA 0.46 2 33061183 33071966

Neighbor

gene id symbol gene type direction distance location
LOC103035281 NA coding upstream 3486 33042845 ~ 33057697 (+)
LOC103035585 LOC108423467 coding upstream 138183 32729119 ~ 32923000 (+)
LOC103038371 NA coding upstream 630918 32427026 ~ 32430265 (+)
LOC103038892 NA coding upstream 635871 32420132 ~ 32425312 (+)
kpna5 kpna5,LOC107552832,LOC107711738,LOC107716841 coding upstream 1211719 31835348 ~ 31849464 (+)
slc4a1ap NA coding downstream 759304 33831270 ~ 33849509 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 940791 34012757 ~ 34183355 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 1140451 34212417 ~ 34226780 (+)
mocs1 mocs1,LOC107656745 coding downstream 1171153 34243119 ~ 34264685 (+)
LOC111193251 NA coding downstream 1226757 34298723 ~ 34301134 (+)
G85486 NA non-coding upstream 16008 33044771 ~ 33045175 (+)
G85461 clip4,LOC107676112,LOC107731604 non-coding upstream 122550 32935238 ~ 32938633 (+)
G85442 NA non-coding upstream 135425 32923056 ~ 32925758 (+)
G85455 NA non-coding upstream 250274 32810513 ~ 32810909 (+)
G85438 NA non-coding upstream 515798 32545112 ~ 32545385 (+)
G85502 NA non-coding downstream 41231 33113197 ~ 33113650 (+)
G85515 NA non-coding downstream 237600 33309566 ~ 33357314 (+)
G85519 NA non-coding downstream 396274 33468240 ~ 33491961 (+)
G85543 NA non-coding downstream 423588 33495554 ~ 33508641 (+)
G85553 NA non-coding downstream 482402 33554368 ~ 33554649 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 619865 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 842421 32199183 ~ 32218762 (+)
G85189 NA other upstream 1236795 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 1255780 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 1591627 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 1674848 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 2216249 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 2564844 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 4412055 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 4757789 37829755 ~ 37933289 (+)

Expression


Co-expression Network