eipr1 (tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760)


Basic Information

Item Value
gene id eipr1
gene name tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29265053 ~ 29324443 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257305.2
TGCGCGTGATTTCATTTCACTCTCGCGGAAACTGCCAGCCAGAGCAGACTCTGGTCACATATTCATACAACCTGTATTATTATGAATGAAAAAGCCTTTCTGTAGCAATAAATATAGcctaatatacatattttacagctTCTGTTCATAAGCCAGAGGTTTGGAGACATGGAGGACGACGCTCCTGTCATTTATGGTCTGGAGTTTCAGGCCCGTGCTTTGACTGCTCAGACTGCTGAAACTGACGCGATAAGGTTCTTAGTAGGCACTCAGTCGCTCAAGTTTGATAATCAGATCCACATCATTGACTTTGATGATGAGAACAATATCATTAATAAGAATGTGCTTCTGCATCATGCTGGTGAGATATGGCACATCAGCGCCAGCCCCGCTGACAAAGGAGTGCTGACCACGTGCTATAACAAGACCTCAGAGAGTCGTGTGCTAACTTGTGCAGCGGTGTGGAGGATGCCCCTGGAATGGGAATCAGGCAGCCACGAATCCCCCGACGATTCATCAAACAGCCCACAGACCCTGGAGCTCCTCTGTCACCTTGACAACACAGCCCACGGCAACACGGCCTGTGTGCTGTGGGAGCCCATGGGCGATGGCAAGCGTGTGATCTCTCTGGCCGATAGCCACGTCGTGCTCTGGGaccttcaggagagctccaccAAGGCCACGATCTCCAGCAGCGCCACCCTGGAAGGCAAAGGGCAGCTGAAGTTCACCTCTGGCAAGTGGAGTCCACACCACAACTGCACCCAGCTGGCCACAGCCAATGACACGGCCATCCGCGGCTGGGACCTCCGCAGCATGAGTCAGATCTTCTGCATTGAGAATGCCCATGGGCAGTTGGTGCGAGACTTGGACTTCAACCCCAACAAGCAGTACTACTTGGCCAGCTGTGGAGATGACTGTAAGGTCAAATTCTGGGATGTGAGGCATATCAACGAGCCCGTCAAAACCCTGGAGGAGCACTCGCACTGGGTGTGGAGTGTGAAGTACAACCACTCGCACGACCAGCTGCTGCTTACAGCCAGCAGTGACAGCAGGGTGATCCTGTCCAACATGGTGTCCATCTCCTCTGAGCCCTTCGGCCACCTAGTGGACGATGACGACCTCAGTGACAATGAGGAGACTCATCATGAAGAGAAGAGCAAAGAACCACTGCAGGACAGCATCATCTCCACATACGAGGAGCACGAGGACAGTGTGTATGCGGTGGAGTGGTCTTCAGCTGACCCCTGGCTGTTCGCCTCCCTGAGTTACGATGGCAGACTGGTCATTAACAGGGTGCCCAGAGCCCTGAAGTATCGCATCTTGCTGTAGCGTGAGTGACTAAAGGGATGAGAGGAAAGCACTTCTAAACTGCTGAATGTGATAGATGTGCACAAAAAGTAAAGactataagaatataaaaaaaataccgaAAATACAAGCGAGACGTTTGAAGAAAGTGGCGAGCGGCAGGCCGGGAAAACACGAGTCGAGATACATTAGCATAAAACACACATCCGCTATTAACACCACTAATTAAAGGCAGTCCCGAGAGCAGTGGGATGGCTTGGAGGCTGTTTGAAGGCGAGAGGGCCGCGGGGCACGGAGTGGCGTTTGTCTTTGAAAAAGCCCCTCGTGTTGATAGCCAGAGCTGCGCTGGTTGTGTTAGAGAAGCCCAGGCTCGCTTCATCTCGGCCAGCCTCGGGCAGCCCGGCGCTTGGCTCCAGCCCCACCACTGAGTACAAAGTGCAGCCATGGAGAAAGACCTGCCAGGGGGAGCACAGCGCAGCAGGCCGCTCCTCCAGCCTCCGCACTCCGCACTGTCTCTTGCTATTTCTCCTCTACTTTCTCCCAGTTAACTCCCACCAGATCCACCATACTGCTCCTCACCAACAGCTTCATCTATGGGTGAAGAGAAGTAAGGGGGAGTCTACCTAAACTTTAAACGAGTTAACATTAACTTATTGCTGTTCAGTAGCTTTGTTACACTGCACTATTAAAGTTCTGAGACAGTGTTCCTTTTTTATTGTGATATCCAGCCATTGTTGTTCTATAAAAAgttagaaaaatacattttgcaaCCTTCAGCTTCATGTTGCTTAAAGTTCCAATCCCAGAGAAAGTTTGAAATCTAATTAATCTAATTTTCAATTGAGAAtccaaaattgaaaaaaaatatatattcattatttattttttttattttttttatttttgaaaaaataacgtcttgtat

Function

symbol description
tssc1 EARP and GARP complex-interacting protein 1

NR:

description
PREDICTED: protein TSSC1 isoform X1

GO: NA

KEGG:

id description
K23289 EIPR1, TSSC1; EARP and GARP complex-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257305.2 True 2236 mRNA 0.49 9 29265053 29324443

Neighbor

gene id symbol gene type direction distance location
adi1 adi1,LOC107753353 coding upstream 49380 29187575 ~ 29215673 (+)
LOC111193134 ltbp2 coding upstream 296025 28854283 ~ 28969028 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding upstream 463814 28775149 ~ 28801239 (+)
LOC103029222 NA coding upstream 516625 28739241 ~ 28748428 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 589390 28662092 ~ 28675663 (+)
LOC103038403 myt1l coding downstream 90069 29414512 ~ 29625594 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding downstream 302192 29626635 ~ 29716871 (+)
LOC103028385 LOC103028385 coding downstream 410170 29734613 ~ 29737276 (+)
LOC103027650 pdia6,LOC105893145,LOC106607563 coding downstream 433384 29757827 ~ 29766422 (+)
nol10 nol10 coding downstream 461583 29786026 ~ 29815914 (+)
G84415 LOC108423477,LOC108269999,LOC107723284,LOC107589779 non-coding upstream 79115 29179869 ~ 29185938 (+)
G84414 LOC108269999,LOC108423477,LOC107570253,LOC107684238,LOC107753355 non-coding upstream 89066 29172806 ~ 29175987 (+)
G84412 LOC107589761 non-coding upstream 102686 29160394 ~ 29162367 (+)
G84403 NA non-coding upstream 152404 29110612 ~ 29112649 (+)
G84402 NA non-coding upstream 161075 29103731 ~ 29103978 (+)
G84462 NA non-coding downstream 16488 29340931 ~ 29341213 (+)
G84473 NA non-coding downstream 34754 29359197 ~ 29359659 (+)
G84484 NA non-coding downstream 64785 29389228 ~ 29389688 (+)
G84492 NA non-coding downstream 209379 29533822 ~ 29534343 (+)
G84534 NA non-coding downstream 417584 29742027 ~ 29742487 (+)
LOC107197844 NA other upstream 186155 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 221314 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 223446 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 239939 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 294214 28970264 ~ 28970839 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 643107 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 1282314 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 2130541 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 2425260 31749703 ~ 31805403 (+)
G85189 NA other downstream 2499143 31823586 ~ 31824388 (+)

Expression


Co-expression Network