nol10 (nol10)


Basic Information

Item Value
gene id nol10
gene name nol10
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29786026 ~ 29815914 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257320.3
GTGTGCAGGGTCTCGTGTTCCGTCCGGACTGTAATCCGCAGCTCTTGTTGTTGTAGTTAACAACGTGGAGCGAAGTTCATACAGAAATCGGCCCAGTTTAAACcttaaatacttaaacacaCAGATTATGCTGAGTGAAAAAGACCTGAACTCTTAAACATGCAGGTGTCCAGTGTGAACAACGTGAAGATTTATAATCTGAGCCATGGAAAGTCTCTGCCTGAGtGGTTATCAGATCGAAAAAGGAGAGCCTTACAAAAGAGAGATGTTGATGTCCTCAGAAGGATTGAGCTCATTCAGGATTTTGAGATGCCCACTGCAGCAACCACTATCAGAGTATCACGAGATGGGCAGTATATTTTAGCTGCAGGAACATACAAACCCAGGATCCGATGCTATGACACGTACCAGTTGTCTCTGAAGTTTGAGAGATGTATGGACTCTGATGTGGTGACCTTTGAGATCCTGTCTGATGATTACTCAAAGCTTGTGTTTTTGCATGTGGATCGTTACGTGGAGTTTCACTCTCAGCATGGACACTACTACAAAACACGCATACCGAAGTTCGGTCGAGACTTCTCCTACCACTACCCATCCTGTGATCTGTACTTTGTTGGAGCCAGCTCTGAGGTCTACAGGTTGAATCTGGAGCAGGGCAGGTTCCTCAACTCTCTGCAGACCGATGCAGCAGAGATAAATGTGTGTGATATCAACCCTGTTCATCAGTTGTTTGCTGCAGGGACTGTGGAGGGGAAAGTGGAGTGCTGGGACCCTCGCGTGCGCAGTCGAGTGGCTGTTCTGGACTGTGCTCTCAGCAGCGTGACTGAGGGAACAGAAGTTGAGGGCTTGCCTTCTGTCAGTGCGCTGAAGTTTAACAGCTCGCTGGGAATGGCTGTGGGCACCACTACTGGACAGgTTTTGCTGTTTGACCTGCGTTCCTCCCACCCCCTACTGGTGAAGGACCATTATTACGGCATGCCCATCCATTCCATTAATTTCCATGAGCAGCTGGACCTGGTGCTGTCAGCAGACTCTAAAATCATCAAGATGTGGAACAAAGACACCGGTAAAATGTTTTCCTCCATCGAGCCATCATCCAGCATCACTGATGTTTGTGTTTATCCTGGCTCTGgtATGCTTTTCACTGCCAATGAAGACCCCAAAATGAATACATTCTACATTCCCGCCCTGGGTCCTGCACCCCGCTGGTGCTCTTTCCTGGATAACCTGACTGAAGAACTGGAAGAGAATCCAGAGAGCACCGTCTATGATGATTACAAGTTCGTCACACGCAAAGATCTGGAGAACCTTGGTCTGACCCATCTGATTGGCTCTCCTCTGTTGAGAGCCTACATGCATGGCTTCTTCATGGATATCAGACTTTACCACAAGGTAAAGACCATGTCAAATCCTTTTGCTTACGAGGAATATCGAAAGGACAAGATTCGCCAGAAAATTGAGGAGTCGAGAGTTCAGCGAGTCCAGCTTAAGAAACTTCCCAAGGTGAATAAAGAGCTCGCTATTAAGCTGATGGAGGAGGGAGATAATGAAGATGCTCTGAGTGCTGCCAAGAAGAAGAAAGCCAAGGGTGCCACCAGCATTCTCCGTGACGATCGTTTCAAGATGATGTTTGAGAACCCAGACTACCAAGTTGATGAGCGTAGCGAGGAGTTCCGATTGCTCAACCCCATCGTCTCCAAGGTTGGCCagcagaggaggaagaaactgCAGCAGTTGGTGGAGAAGGAGGCACATCAACAGCAGGAAGATCAGGAGGATGAGGAGCTGGAGGGCCGGGCCAGTTCAGAAGAAGAGGAGAGCTCTGACGATGATAAAAGTTGGGTGGAGGAGGTGCGGGAGCAGCGGCGCCTCATAAGGGCTGAGGAGAGGCAGCGCAGGTTTAATGAGAGGAAGAAGCAGGACCGCAACACCAACCTGCAGAGTTCAGATCCAGCTGGGAGCTCCCAGCAGTCCCAGGcacaggggcggagccaaccccggTTCTACCAGATCAAAACCGGCGAGGAGTTTCGCAGCTTTGGCGATGTTGCACGCAAACAGAAGGTGCAAAAAACATCTCTTGAGGAGCGTCTGAGGCAGGAGGAAAGCTCAGGGATGCTGAATCTCACTGACACGGCTGTCGGAAGCAAACAGATAACTTTCACTCTCAAGAAGTCGGAGAAGCAGCTGAAACAGCAGCAGGCTGAGCGGGACCACCATGACGAACGCAGGAAAATCAGGAGGTCTGCCGGCCACCTTTACACTCGGGGCAGAGGGAGAGGCAGAGGGAGAGGCAGAGGCAGAGGACGTTTCTGACCTCAGGACAGACCATGATCTCTGCCAGATAGAACAAAGAACTTCTAGAAATCTAGAACCTCAGCATTGTGGTGCCAATCACTCCTATAGTGCTGACCTGCAGGGCTTTGTTATTCCAAGCTCACAGTGCCGACATAAACTGTGTCTATTTGCCCCAGAGACAATAGCACAGACGAAGGTGCTGAGAGTGCTCCtgatttccatcagcaggacggCAGAGTGCTGAGGATGGAATGTGAGACCGGatgagatgaagagagagagaagatcgGAGGaagaatctgtttttttattattattttattttaaggagTATGGATTGTAGTATACTGTAAAAGTTGGTGtacgtgtgtgagtgtgtgtaagctgTGTGCAACACCTCTGACCTTCTACTTTTCTCCTTTTGTCCCTCACTGCAGTCTAAACAGAACTCTGTGCTGTTTAAGAAACATGGAATATTTTATCCACATCTGCCTGTCTTGTGTGATCACTGATTTTTTTGTATACTGCATATTCAGCTCCTCTCTCACAAACCTTGCAATTCAGGGGTAGAAATAATATTTTGGATTGTTTATTTACCATCATTTAAAAGGACAAGCCTCCCTTGAAGTTGTATTAACATTTAATAGTGAATAGACTGATAGAAAAGGTCTAACAAATCTTACAAAGCCTGAACCATCTATTAATTTTCAAATCATTATTATATTCTCTGCATTACATAAAACGCAAGGTACAAACATCACCTTTCTTacataataagaaataaaaaaatgagtttatttgacCTTCTGATTGattattaaaaaaggaaattta
>XM_022673130.1
ATGTGTGCAGGGTCTCGTGTTCCGTCCGGACTGTAATCCGCAGCTCTTGTTGTTGTAGTTAACAACGTGGAGCGAAGTTCATACAGAAATCGGCCCAGTTTAAACcttaaatacttaaacacaCAGATTATGCTGAGTGAAAAAGACCTGAACTCTTAAACATGCAGGTGTCCAGTGTGAACAACGTGAAGATTTATAATCTGAGCCATGGAAAGTCTCTGCCTGAGtGGTTATCAGATCGAAAAAGGAGAGCCTTACAAAAGAGAGATGTTGATGTCCTCAGAAGGATTGAGCTCATTCAGGATTTTGAGATGCCCACTGCAGCAACCACTATCAGAGTATCACGAGATGGGCAGTATATTTTAGCTGCAGGAACATACAAACCCAGGATCCGATGCTATGACACGTACCAGTTGTCTCTGAAGTTTGAGAGATGTATGGACTCTGATGTGGTGACCTTTGAGATCCTGTCTGATGATTACTCAAAGCTTGTGTTTTTGCATGTGGATCGTTACGTGGAGTTTCACTCTCAGCATGGACACTACTACAAAACACGCATACCGAAGTTCGGTCGAGACTTCTCCTACCACTACCCATCCTGTGATCTGTACTTTGTTGGAGCCAGCTCTGAGGTCTACAGGTTGAATCTGGAGCAGGGCAGGTTCCTCAACTCTCTGCAGACCGATGCAGCAGAGATAAATGTGTGTGATATCAACCCTGTTCATCAGTTGTTTGCTGCAGGGACTGTGGAGGGGAAAGTGGAGTGCTGGGACCCTCGCGTGCGCAGTCGAGTGGCTGTTCTGGACTGTGCTCTCAGCAGCGTGACTGAGGGAACAGAAGTTGAGGGCTTGCCTTCTGTCAGTGCGCTGAAGTTTAACAGCTCGCTGGGAATGGCTGTGGGCACCACTACTGGACAGgTTTTGCTGTTTGACCTGCGTTCCTCCCACCCCCTACTGGTGAAGGACCATTATTACGGCATGCCCATCCATTCCATTAATTTCCATGAGCAGCTGGACCTGGTGCTGTCAGCAGACTCTAAAATCATCAAGATGTGGAACAAAGACACCGGTAAAATGTTTTCCTCCATCGAGCCATCATCCAGCATCACTGATGTTTGTGTTTATCCTGGCTCTGgtATGCTTTTCACTGCCAATGAAGACCCCAAAATGAATACATTCTACATTCCCGCCCTGGGTCCTGCACCCCGCTGGTGCTCTTTCCTGGATAACCTGACTGAAGAACTGGAAGAGAATCCAGAGAGCACCGTCTATGATGATTACAAGTTCGTCACACGCAAAGATCTGGAGAACCTTGGTCTGACCCATCTGATTGGCTCTCCTCTGTTGAGAGCCTACATGCATGGCTTCTTCATGGATATCAGACTTTACCACAAGGTAAAGACCATGTCAAATCCTTTTGCTTACGAGGAATATCGAAAGGACAAGATTCGCCAGAAAATTGAGGAGTCGAGAGTTCAGCGAGTCCAGCTTAAGAAACTTCCCAAGGTGAATAAAGAGCTCGCTATTAAGCTGATGGAGGAGGGAGATAATGAAGATGCTCTGAGTGCTGCCAAGAAGAAGAAAGCCAAGGGTGCCACCAGCATTCTCCGTGACGATCGTTTCAAGATGATGTTTGAGAACCCAGACTACCAAGTTGATGAGCGTAGCGAGGAGTTCCGATTGCTCAACCCCATCGTCTCCAAGGTTGGCCagcagaggaggaagaaactgCAGCAGTTGGTGGAGAAGGAGGCACATCAACAGGAAGATCAGGAGGATGAGGAGCTGGAGGGCCGGGCCAGTTCAGAAGAAGAGGAGAGCTCTGACGATGATAAAAGTTGGGTGGAGGAGGTGCGGGAGCAGCGGCGCCTCATAAGGGCTGAGGAGAGGCAGCGCAGGTTTAATGAGAGGAAGAAGCAGGACCGCAACACCAACCTGCAGAGTTCAGATCCAGCTGGGAGCTCCCAGCAGTCCCAGGcacaggggcggagccaaccccggTTCTACCAGATCAAAACCGGCGAGGAGTTTCGCAGCTTTGGCGATGTTGCACGCAAACAGAAGGTGCAAAAAACATCTCTTGAGGAGCGTCTGAGGCAGGAGGAAAGCTCAGGGATGCTGAATCTCACTGACACGGCTGTCGGAAGCAAACAGATAACTTTCACTCTCAAGAAGTCGGAGAAGCAGCTGAAACAGCAGCAGGCTGAGCGGGACCACCATGACGAACGCAGGAAAATCAGGAGGTCTGCCGGCCACCTTTACACTCGGGGCAGAGGGAGAGGCAGAGGGAGAGGCAGAGGCAGAGGACGTTTCTGACCTCAGGACAGACCATGATCTCTGCCAGATAGAACAAAGAACTTCTAGAAATCTAGAACCTCAGCATTGTGGTGCCAATCACTCCTATAGTGCTGACCTGCAGGGCTTTGTTATTCCAAGCTCACAGTGCCGACATAAACTGTGTCTATTTGCCCCAGAGACAATAGCACAGACGAAGGTGCTGAGAGTGCTCCtgatttccatcagcaggacggCAGAGTGCTGAGGATGGAATGTGAGACCGGatgagatgaagagagagagaagatcgGAGGaagaatctgtttttttattattattttattttaaggagTATGGATTGTAGTATACTGTAAAAGTTGGTGtacgtgtgtgagtgtgtgtaagctgTGTGCAACACCTCTGACCTTCTACTTTTCTCCTTTTGTCCCTCACTGCAGTCTAAACAGAACTCTGTGCTGTTTAAGAAACATGGAATATTTTATCCACATCTGCCTGTCTTGTGTGATCACTGATTTTTTTGTATACTGCATATTCAGCTCCTCTCTCACAAACCTTGCAATTCAGGGGTAGAAATAATATTTTGGATTGTTTATTTACCATCATTTAAAAGGACAAGCCTCCCTTGAAGTTGTATTAACATTTAATAGTGAATAGACTGATAGAAAAGGTCTAACAAATCTTACAAAGCCTGAACCATCTATTAATTTTCAAATCATTATTATATTCTCTGCATTACATAAAACGCAAGGTACAAACATCACCTTTCTTacataataagaaataaaaaaatgagtttatttgacCTTCTGATTGattattaaaaaaggaaattta

Function

symbol description
nol10 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human NOL10 (nucleolar protein 10).

NR:

description
PREDICTED: nucleolar protein 10

GO: NA

KEGG:

id description
K14788 NOL10, ENP2; ribosome biogenesis protein ENP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257320.3 True 3132 mRNA 0.47 21 29786028 29815914
XM_022673130.1 False 3131 mRNA 0.47 21 29786026 29815914

Neighbor

gene id symbol gene type direction distance location
LOC103027650 pdia6,LOC105893145,LOC106607563 coding upstream 19604 29757827 ~ 29766422 (+)
LOC103028385 LOC103028385 coding upstream 48750 29734613 ~ 29737276 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding upstream 69155 29626635 ~ 29716871 (+)
LOC103038403 myt1l coding upstream 160432 29414512 ~ 29625594 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding upstream 461583 29265053 ~ 29324443 (+)
odc1 odc1,LOC107753348,LOC107687839 coding downstream 31714 29847628 ~ 29853265 (+)
LOC103038716 LOC108423492,LOC103383742,LOC108269470,LOC108270315 coding downstream 173872 29989786 ~ 30008928 (+)
pask LOC107557849 coding downstream 332345 30148259 ~ 30173142 (+)
mterf4 NA coding downstream 357672 30173586 ~ 30179026 (+)
LOC103030290 NA coding downstream 365006 30180920 ~ 30184812 (+)
G84535 NA non-coding upstream 39086 29746627 ~ 29746940 (+)
G84534 NA non-coding upstream 43539 29742027 ~ 29742487 (+)
G84492 NA non-coding upstream 251683 29533822 ~ 29534343 (+)
G84484 NA non-coding upstream 396338 29389228 ~ 29389688 (+)
G84473 NA non-coding upstream 426367 29359197 ~ 29359659 (+)
G84558 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378 non-coding downstream 43546 29859460 ~ 29864834 (+)
G84591 NA non-coding downstream 116046 29931960 ~ 29932390 (+)
G84597 NA non-coding downstream 143461 29959375 ~ 29961212 (+)
G84623 NA non-coding downstream 255043 30070957 ~ 30072897 (+)
G84685 NA non-coding downstream 369969 30185883 ~ 30243942 (+)
LOC107197844 NA other upstream 707128 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 742287 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 744419 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 760912 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 815187 28970264 ~ 28970839 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 151636 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 790843 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 1639070 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1933789 31749703 ~ 31805403 (+)
G85189 NA other downstream 2007672 31823586 ~ 31824388 (+)

Expression


Co-expression Network