LOC103029222


Basic Information

Item Value
gene id LOC103029222
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28739241 ~ 28748428 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257327.2
cagaaGCTCCACGTGACCGTCATTCACAGAGAGCGCAGTGCTGCCAATGAGACTTTTGTGTCTGTGCTGAAATGCTGAGGTCATTGAAAGCTGCAGCATGATTGGGAGCCTTATTTATTATGGTCTGTATCCGCTCACTAAACTCATCAACAGGCTCTCAGAGTCGTGGTGGAAGGGTCATCTGGGTCATCCTGATCATCCTGTGTTCATTAATGGCAAAGAAGTGTGGGATGGTGGTGGAGCCCCTTTCAGAAGGCTTAGTGAGCAGCAGACTGCCCTGTTGGATGAGTGGCTCAGCACTGACAGTGCCCCTTTGGAAAAGCATAAACCTGCTAGTCAAGAGAGACTGGACGCTGAGGGACTGGTGGAGAGTAGATTTGTTCTGGAGACCAGGGAGGTGGTGCTAGCTGAGGAAAGGATGGAGCAACAGGAGGAGCACCTCCATTCCAAAAACGTAGAGGAGAGGATTAGTCCATTGGACAGTACAGTGGAACCTGATCCAGAATCTTCAGCAGAGGCAAAAGCTTTCACTCCAGCAATGGAGAAGGATGATGTTGACCTTTCTGAAGAAAAGAAGACTGTCCCATTAGCAATGAAAACTGATGGTATGTCCATCCTACAAGATGAAACAATTGAAGTGAATTTAATGATAGAGAAGGAGATGTTCTCTACAATCGAGTGGGCTGAAGCAGAGGCTCCTGAAGCTGCTGGGAGTGAAGTGGGGTTTACTTCTCTGGAGGACAAGAATTGTGACGAAGAGACTGGAACAGTGGCCGCAGTTGCTCAGCCTGGAGACACAAACATCAACATTAGGGAAAGCGAATCCAGAGTTAATGAGGGCgactgtgtgtttaatttgaGTGAGCTGCTCAATGATAGCAATGCAGAGGCCCTGAATAGTTTTACACAGTTCCAGCCTGTGCCTGCTTGGCATTTCCCAGTAGGCCTTGGCCTGTCGGAGACAGTGTGTTGTCCTTCAGTACAGTTTCCTGGCATGAGCTACTACCCTGCAATTCAAGACAATAACAATTTTGAAGTGATGTGGAGGGTGTGGGAGGACCTCAGTGAAGATGGTTATGACTCTGCAACACTGTCCACAGCCAAAGCTACAGCCAAGTTTGATTTCACCCTTATGTCCTACAATATCCTGGCCCAGGACCTGCTAGAAGCTAACTCAGATCTGTATCTACACTGCTTAGAGGAAACACTAGCATGGGAGAACCGGTTTCAAACCATCCTAAAAGAGCTTCAGACCTGGGAGCCTGATATTATTTGTCTTCAAGAGGTCCAGGAGAATCACTACCTGGAGCAaatgtttccaatcctgactgagaTGGGATATATCTGTCTATACAAGCGGCGCACAGGCACCAAAACAGACggctgtgtggtgtgttttcGAGGTAATCGTTTCATGCAGCTTTCTGTCAACATGCTGGAGTTCCATCGTCCTAACTGTGAGCTCCTGGACCGGGACAACGTGGGCATTGTGCTGCTCCTTCAGCCAATCAGCGAACAGGGGGAAGTCCTTCAGTTAAACCCTATCTGTGTGGCCAGCACACACCTGTTGTTTAACCCCAGACGGGGAGATGTGAAACTGGCTCAGCTGGCCATAATGCTGGCAGAGATCAACACGGTGGTCAAGGAGTGCAAGAAGAAAGGAAGTGACTGTGAGGTCATTCTGTGTGGGGACTTAAACTCCTTACCCAACATGCCACTGTACCAGCTGATCGTCACCGGACAGCTTTACTATCATGGACTTCCAGCCTGGATGGTATCTGGTCAAGAGGACTTGTCATACAAAATCCATCACAGGAGGCTGTACGCCCCTCTGTGGCCCAGCAGCCTGGGTATCAGTGACAGCTGTCAGTACTTTACTGAAGATAAACCTCAAGCCAACCCCTCAGGGAAACTCCAGtacaaccatgacttcctccggCAGCTGCGCTACTGCCAAGCTGCCTGTGTGCGGCCCCCAGACCTGGAACTCATACCGGGCGTCACAGACAACACACCAAATCCTGAAGAAAAGCTGCTGTTTGCTCCAAGGTTTGGAAACACTATAAGTCACGGATTAAAGCTAAGTTCCGTGTATAGTCCAAACATAGCCGGCACCGAGCGCTGTGCAGTCACCACCCTGCACTCAGGAGCAGCCATGGTCGACTACATCTTTTACTCTACAAGACTTGACTGCTCAGAGGAAcataaagACTGTGAGAACGGTTTGAAGCTGCTTGGACGTCTCGCTCTGCTGTCTGAAGCAGACCTGTGGTCACTGAATGGACTCCCCAATTATATGTTCCCCTCAGACCACCTCAGCCTGCTGGCCAAGTTTCAGCTCAGTTGAATGTTTAGGGCTCCAGCCAGTGTGACACAGCAAGAGATACCCAAATGCTCCCAAGTTCAGTGAACTAAGTCTGTTAGTGCTTGGACTTGAAATTGCTCTTTTTTGAGGCCTTAATGGAGATGTTTCTTATGGTTCGTTGTATTCAAAGTCAATGGCAGGTTGATTTTTGCTAAAATAGTTTTCTTCCTGGCAAAGATTGTGGCCAAAGCTAAAGTTTCTGTCATTTTAAACATGTCCTTACTTTGACTGTTGAAGTTTCACAAAGACATTTTAGTCAGATGCCATTTTTATACTCTCTGTCATAGAGTGGAAGCTTAGTGTGGTTTTAAATCTTTGAGTTTGAGATTGTGTGAATTTGGGCATTTTGAGGTTATTATACTGTAAGTGGTGTTGTGGGCATTGTTATGGCAAATGGAAATAGCCATGGAggaaatatttgtttatttaagttctgtattttcactctaaaaaaaaaaaaatcctgaatgtACCTCAATAGagttttgacttttattttcgAAATTATGTGCTTTCATTTTGAGCGGCTTAATATTCTTTCAGTGgaagaaaattattaaataacttGCCAAAAGAAa

Function

GO: NA

KEGG:

id description
K18729 ANGEL; protein angel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257327.2 True 2943 mRNA 0.46 10 28739241 28748428

Neighbor

gene id symbol gene type direction distance location
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 63578 28662092 ~ 28675663 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 179147 28428946 ~ 28560094 (+)
gpatch2l gpatch2l coding upstream 321436 28375537 ~ 28417805 (+)
LOC111193237 NA coding upstream 382432 28355574 ~ 28356809 (+)
ift43 ift43,LOC107688076 coding upstream 418749 28297960 ~ 28320492 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding downstream 26721 28775149 ~ 28801239 (+)
LOC111193134 ltbp2 coding downstream 105855 28854283 ~ 28969028 (+)
adi1 adi1,LOC107753353 coding downstream 439147 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 516625 29265053 ~ 29324443 (+)
LOC103038403 myt1l coding downstream 666084 29414512 ~ 29625594 (+)
G84280 NA non-coding upstream 16190 28705893 ~ 28723051 (+)
G84264 NA non-coding upstream 151287 28587396 ~ 28587954 (+)
G84219 NA non-coding upstream 364724 28373948 ~ 28374517 (+)
G84164 NA non-coding upstream 378252 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding upstream 407833 28328775 ~ 28331408 (+)
G84291 fcf1,LOC107704360 non-coding downstream 21740 28770168 ~ 28772835 (+)
G84294 NA non-coding downstream 54686 28803114 ~ 28803321 (+)
G84296 NA non-coding downstream 75396 28823824 ~ 28825276 (+)
G84298 NA non-coding downstream 177182 28925610 ~ 28926176 (+)
G84300 NA non-coding downstream 231045 28979473 ~ 28979778 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 907657 27824256 ~ 27831584 (+)
fam98b NA other upstream 917030 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1961753 26727823 ~ 26777488 (+)
spata7 NA other upstream 2339974 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 2411903 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 221836 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 251074 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 292551 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 294789 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 323463 29071891 ~ 29078898 (+)

Expression


Co-expression Network