gpatch2l (gpatch2l)


Basic Information

Item Value
gene id gpatch2l
gene name gpatch2l
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28375537 ~ 28417805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257332.3
GGTGGCGGAAGTGACGCCATGCGCGGGGCGGAAGTCCTTCCCCCGTCTTCAGCTGTGAAAACACAACAGCAGGTTCTGCAGCTGAGTTGCTGATATGGAGGAGCTGGTGCAGGACCTGGTGTCGGCACTGGAGCAGACGTCGGAGCAGGCCAAGCTGGATGAGCTGTGGGAGGAGATGGTGCTGAGCCCGCTGCAGCATCGGCGGCAGGTCCGCAGACGAAGGGGGCGCAAGCGACGCTGTGACTTCTCCCTCCACGGGCCGGTGCACGGACGCTGCCTCAGCGAGCCGTCCGAGTCCAGCCTGGACGAGGCCTTCACCAGGGACCACAGGCAGGGTGCTGCAGCCACTGTGGCCATATCAGCAGCAGGTGTGGTGCCTGCTAACTACAGTGATTCAGATGACACTGTCATAGCAAAGCGCTGGTCCTCAGCATCAGTGTCTTTTAGGGCCAGGCAGCACTCCTGGCCAGAGTCGGACTCTTTCACAGAGAACACTCCGGGAAGGCCGCTGCGCAGGCGCCGTAAGGTCAAACGCATGACCTCAGATGTGACCGTGAGCCTGCAGCAGAAGCTGAGAGTGTCTGGGTTGGAACGGGGTGAACAAacccatcatcatcaccatcaccaccaccatcagaGGTCGTATAAGAAGCAAAGGTTAGGCCGACTGAAAAAGCGCCCCGGGGCCTGGCCGGGGCAGGATGGAGGCTCTGTTGTGGCCGGAGTGGGAGGCCTGTCTGCAGACTGCTGGAAGGACAAGATTCTGCGCCAGGCCAAGGAGCAGAGGGAGGCATCGGACGAAAACATGTCAGAATGTGAAACCAGCAGTGTGTGCAGCAGTGACCCCGGGCTTTTCACCAATGATGAAGGAAGGCAAGGTGATGATGAACAGAGTGACTGGTTCTTTGAAGGCGAGTGTGTGTCGGGAATGAACGTTCAGGCTTTGCGGTCTAGCAGAGAGTCAGAAACAGCCCCCAGGCCTGCAGGGCTGGACGCTAGGAGAGAGAGGAGTCACTCCGCTACTTTCCTTCAACCTGCCCGACCCAATCAGAGAGgtTATCATGCCCGTCTGAACCGCCTGCCGGGTGTGGCCGCACGCTGCATTAGAAGAGGCAGAAGGAGGTTACCTGGCAGGGATAATAATATGACTGTTTTCGTTGACAAAATGAGGACCTATCCACAGGACTCCTATCAGAAAGAGTTTTGGTTACCTTCCTTTGGTAAACGAGACAGAAGTCAGCTGAAGCCTCTGTGTCCGTTGCCCATGTATCCAATTGGCATGGTTCCAGAGAGCTCTCATCCccgctgctcatcatccatgtGCAAAAACAGTAGACAGCCAAATGTTCAAATGGGATTGCTGTGTACAGGAGACAtcaagaggaggaggaaaaccACGGCTGGTCCCACCACCACTTCAGCATACCTCCCCTTTCGCAAAGAAGCCAGGCGAGAAGAACCTGACCAAGGCTCTGCGAAAGCTCTTTCCGCTGGAGAAGAATGCTGTCCCCTGCCCTCCACATCACGGACACATTGCTTCATCAAGCCAGGGACTTCATTCAGCAGCCATGGGGAACACGAGGATGACTGACTGCGACGTTAGCACTGGCAGCCCCCCTTTTGGCCACAGATACTCAGGGTGGAA

Function

symbol description
gpatch2l Orthologous to human GPATCH2L (G-patch domain containing 2 like).

NR:

description
PREDICTED: G patch domain-containing protein 2-like

GO: NA

KEGG:

id description
K17569 GPATCH2; G patch domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257332.3 True 1645 mRNA 0.57 11 28375537 28417805

Neighbor

gene id symbol gene type direction distance location
LOC111193237 NA coding upstream 18728 28355574 ~ 28356809 (+)
ift43 ift43,LOC107688076 coding upstream 55045 28297960 ~ 28320492 (+)
ttll5 NA coding upstream 110210 28182427 ~ 28265327 (+)
flvcr2 flvcr2,LOC106525280,LOC106571030,LOC108242486,LOC104964435 coding upstream 197833 28152935 ~ 28177704 (+)
jdp2 jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding upstream 225428 28134313 ~ 28150109 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding downstream 11141 28428946 ~ 28560094 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding downstream 244287 28662092 ~ 28675663 (+)
LOC103029222 NA coding downstream 321436 28739241 ~ 28748428 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding downstream 357344 28775149 ~ 28801239 (+)
LOC111193134 ltbp2 coding downstream 436478 28854283 ~ 28969028 (+)
G84219 NA non-coding upstream 1020 28373948 ~ 28374517 (+)
G84164 NA non-coding upstream 14548 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding upstream 44129 28328775 ~ 28331408 (+)
G84001 NA non-coding upstream 452179 27923069 ~ 27923358 (+)
LOC111193235 LOC103459065 non-coding upstream 529571 27831977 ~ 27845966 (+)
G84264 NA non-coding downstream 169591 28587396 ~ 28587954 (+)
G84280 NA non-coding downstream 288088 28705893 ~ 28723051 (+)
G84291 fcf1,LOC107704360 non-coding downstream 352363 28770168 ~ 28772835 (+)
G84294 NA non-coding downstream 385309 28803114 ~ 28803321 (+)
G84296 NA non-coding downstream 406019 28823824 ~ 28825276 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 543953 27824256 ~ 27831584 (+)
fam98b NA other upstream 553326 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1598049 26727823 ~ 26777488 (+)
spata7 NA other upstream 1976270 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 2048199 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 552459 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 581697 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 623174 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 625412 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 654086 29071891 ~ 29078898 (+)

Expression


Co-expression Network