ift43 (ift43,LOC107688076)


Basic Information

Item Value
gene id ift43
gene name ift43,LOC107688076
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28297960 ~ 28320492 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257342.3
TCCAGCGTCCAGGAAGTGGAAAGTACGGAGTAACGGGAAGCTCGTGAGATACAGGGATACAGGAAAGCCTGTAAACACGGAGAAATGGAGGATACGCTGCAGCTGGGGGAGAACGGGGTCCCCAAGACTGCTGCTAAAACAGGCAGAAGAGCTCGCCAGGCTGCTGCTGATATGACGGGCATGGAAGAGTCTCGGCCGGGGCGCAAAGCTTCCTCTTCAGGGACCTCTGCTACGGGAGAGGAGGAGGATGATACGGGACCCCCACCTAAGCCACCGCGCCGACAGGGAGGCTGGGCTGAGGAGACCTCTGGTACGGGATCTGCCAAATCTGGAAGAAGGCAAGGTGCGGAAGAGGTTGAGGACCGGCGGCTGAGACCACAGACCCCCGAGGGCTCTGATGATGAGAGTGACATCCCAGTGATCCCCGATCTGGACGAAGTTCAAGAAGAAGATCTCACCATGCAAGTGGCTGCACCGCCAAGtatcCAGGTGAACAGAGTGATGACCTACAGGGATCTGGACAATGATTTAATGAAGTACTCTGCATTTCAGACCTTGGATGGTGAGATTGACCTGAAGCTCCTCACCAAGGTTTTAGCACCGGAGCAGGAGGTGAGAGAGGAGGATGTTGGCTGGGACTGGGATCATCTATTTACGGAGGTGTCGTCCGAGCTGCAGACGGAATGGGatcaaggagagagagaggaccagTCTCCTCTTCCTGTGGCCTGAGAATGAATGACTTTCAGTGAAAGGCCAGTGCCGAACATTACACTCTAGAGGGCCTCTTCTTGTACACAGCTGGTCGCACACGCCTGAGTTACATCTGTATATTTGtatcataatcataatattGTTCATATTGAATAGTTTACTTGATGAACTGTCTGTCTAGTTGTGCTATGTGTCTTCTTATGTTTTGATACTTGGATATAAACTTCTCATTAAAAGTAAAGAACATTGACAGAACTACTGTCTTTCTAAACTTCTTCACTCATCACAAGACCTTTCGTGTCATTCGTACAGCCTGAGGAGAATTTGTAAGATCAAGTCTAAGGTTAATGAGCAGGTAAGCTGAAATCCAGTTGATTGGTTTAAAATGAACTTTACACATCAGAGCAACACAACCTTATCATTATTGACTGCACCATCGACTCTATCTCTCTGCTCTTCTCCAAAGCTTCCCTTTTCTACACAATTATCTCAACCACATTGAGCTCGAATCCTATTGACATCAGTGGGATTAACATAATTAAATGTTTGTATTGGGTCTGAAAAACACTTTCTAATTATGAAAGGTTAAGtgattttaatgctgttttttatttgcatttaaatttattcacatcagaacagaaaaaaaacatcagaagtTGCTGCttgttttaaacacaaattgattacatttgtattaatgactaaattaattatttctaaACATCAGTCTAGTTCTACACATCAGCAGATTCAGTGTCCAGCCAAGCCTTAATTCTTTTTGGACTGCAGCCTATTTGGACTTGCCTGTAGGGACATTTTCTCCAAGCTGTCAACAAAGCATGTTCGCAAGTCACTGTGGATAAAAGAACATTTTCTATGTACCATAAATATAAGGAGATTTCCAACTATATCTTCATTCTTAAATTAAAACgaccaaaaacaacaaactAGCCAAAAACAACAAACTAGCCATGTTTTACTACTAATGCTCTAGGACGTCTGTTACATTTTAAGGATTACTGAATGTTAAATGCTATGTGCACAAAAATGCAAACTGGATGATTTGTTAAAACTGTGGGGGAACAGTGCCCTCCAGgattttttaactgtaaaaaaggtACTATGTATTTTAACTATGGTCAACAAATATATTCTTCTCCGTAAACATTGTCTGTAGCTCATTTGATATAATCACTATTTTgagtacaaaaataaataaataaataaatggc
>XM_007257343.3
TCCAGCGTCCAGGAAGTGGAAAGTACGGAGTAACGGGAAGCTCGTGAGATACAGGGATACAGGAAAGCCTGTAAACACGGAGAAATGGAGGATACGCTGCAGCTGGGGGAGAACGGGGTCCCCAAGACTGCTGCTAAAACAGGCAGAAGAGCTCGCCAGGCTGCTGCTGATATGACGGGCATGGAAGAGTCTCGGCCGGGGCGCAAAGCTTCCTCTTCAGGGACCTCTGCTACGGGAGAGGGACCCCCACCTAAGCCACCGCGCCGACAGGGAGGCTGGGCTGAGGAGACCTCTGGTACGGGATCTGCCAAATCTGGAAGAAGGCAAGGTGCGGAAGAGGTTGAGGACCGGCGGCTGAGACCACAGACCCCCGAGGGCTCTGATGATGAGAGTGACATCCCAGTGATCCCCGATCTGGACGAAGTTCAAGAAGAAGATCTCACCATGCAAGTGGCTGCACCGCCAAGtatcCAGGTGAACAGAGTGATGACCTACAGGGATCTGGACAATGATTTAATGAAGTACTCTGCATTTCAGACCTTGGATGGTGAGATTGACCTGAAGCTCCTCACCAAGGTTTTAGCACCGGAGCAGGAGGTGAGAGAGGAGGATGTTGGCTGGGACTGGGATCATCTATTTACGGAGGTGTCGTCCGAGCTGCAGACGGAATGGGatcaaggagagagagaggaccagTCTCCTCTTCCTGTGGCCTGAGAATGAATGACTTTCAGTGAAAGGCCAGTGCCGAACATTACACTCTAGAGGGCCTCTTCTTGTACACAGCTGGTCGCACACGCCTGAGTTACATCTGTATATTTGtatcataatcataatattGTTCATATTGAATAGTTTACTTGATGAACTGTCTGTCTAGTTGTGCTATGTGTCTTCTTATGTTTTGATACTTGGATATAAACTTCTCATTAAAAGTAAAGAACATTGACAGAACTACTGTCTTTCTAAACTTCTTCACTCATCACAAGACCTTTCGTGTCATTCGTACAGCCTGAGGAGAATTTGTAAGATCAAGTCTAAGGTTAATGAGCAGGTAAGCTGAAATCCAGTTGATTGGTTTAAAATGAACTTTACACATCAGAGCAACACAACCTTATCATTATTGACTGCACCATCGACTCTATCTCTCTGCTCTTCTCCAAAGCTTCCCTTTTCTACACAATTATCTCAACCACATTGAGCTCGAATCCTATTGACATCAGTGGGATTAACATAATTAAATGTTTGTATTGGGTCTGAAAAACACTTTCTAATTATGAAAGGTTAAGtgattttaatgctgttttttatttgcatttaaatttattcacatcagaacagaaaaaaaacatcagaagtTGCTGCttgttttaaacacaaattgattacatttgtattaatgactaaattaattatttctaaACATCAGTCTAGTTCTACACATCAGCAGATTCAGTGTCCAGCCAAGCCTTAATTCTTTTTGGACTGCAGCCTATTTGGACTTGCCTGTAGGGACATTTTCTCCAAGCTGTCAACAAAGCATGTTCGCAAGTCACTGTGGATAAAAGAACATTTTCTATGTACCATAAATATAAGGAGATTTCCAACTATATCTTCATTCTTAAATTAAAACgaccaaaaacaacaaactAGCCAAAAACAACAAACTAGCCATGTTTTACTACTAATGCTCTAGGACGTCTGTTACATTTTAAGGATTACTGAATGTTAAATGCTATGTGCACAAAAATGCAAACTGGATGATTTGTTAAAACTGTGGGGGAACAGTGCCCTCCAGgattttttaactgtaaaaaaggtACTATGTATTTTAACTATGGTCAACAAATATATTCTTCTCCGTAAACATTGTCTGTAGCTCATTTGATATAATCACTATTTTgagtacaaaaataaataaataaataaatggc

Function

symbol description
ift43 Involved in cilium assembly and intraciliary retrograde transport. Located in centriolar satellite and cilium. Part of intraciliary transport particle A. Implicated in cranioectodermal dysplasia 3; retinitis pigmentosa 81; and short-rib thoracic dysplasia 18 with polydactyly.

NR:

description
PREDICTED: intraflagellar transport protein 43 homolog

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0035721 intraciliary retrograde transport biological_process

KEGG:

id description
K19675 IFT43; intraflagellar transport protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257342.3 True 1949 mRNA 0.42 10 28297960 28320492
XM_007257343.3 False 1934 mRNA 0.42 9 28297960 28320492

Neighbor

gene id symbol gene type direction distance location
ttll5 NA coding upstream 32633 28182427 ~ 28265327 (+)
flvcr2 flvcr2,LOC106525280,LOC106571030,LOC108242486,LOC104964435 coding upstream 120256 28152935 ~ 28177704 (+)
jdp2 jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding upstream 147851 28134313 ~ 28150109 (+)
LOC103036705 fos,LOC108423428,LOC107702235 coding upstream 167070 28127393 ~ 28130890 (+)
acyp1 acyp1 coding upstream 176253 28119021 ~ 28121707 (+)
LOC111193237 NA coding downstream 35082 28355574 ~ 28356809 (+)
gpatch2l gpatch2l coding downstream 55045 28375537 ~ 28417805 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding downstream 108454 28428946 ~ 28560094 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding downstream 341600 28662092 ~ 28675663 (+)
LOC103029222 NA coding downstream 418749 28739241 ~ 28748428 (+)
G84001 NA non-coding upstream 374602 27923069 ~ 27923358 (+)
LOC111193235 LOC103459065 non-coding upstream 451994 27831977 ~ 27845966 (+)
G83972 NA non-coding upstream 593079 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 682393 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 1028729 27268958 ~ 27269231 (+)
LOC111193142 NA non-coding downstream 8283 28328775 ~ 28331408 (+)
G84219 NA non-coding downstream 53456 28373948 ~ 28374517 (+)
G84264 NA non-coding downstream 266904 28587396 ~ 28587954 (+)
G84280 NA non-coding downstream 385401 28705893 ~ 28723051 (+)
G84291 fcf1,LOC107704360 non-coding downstream 449676 28770168 ~ 28772835 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 466376 27824256 ~ 27831584 (+)
fam98b NA other upstream 475749 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1520472 26727823 ~ 26777488 (+)
spata7 NA other upstream 1898693 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1970622 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 649772 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 679010 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 720487 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 722725 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 751399 29071891 ~ 29078898 (+)

Expression


Co-expression Network