LOC103036705 (fos,LOC108423428,LOC107702235)


Basic Information

Item Value
gene id LOC103036705
gene name fos,LOC108423428,LOC107702235
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28127393 ~ 28130890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257356.3
TGGGTTTATGCAGATAGGCTACGCTTTTTTGGCGCGTGCCGTGTGAAGATGTTCCCCACAGCCAGATGGTACATCCTCGGTTCATTCATAAAAATTCTGGGGGAATATAAGGAGGAGCTTGCAGAGCAGTCTGTCAGTGGCCAGGTTTACAAACCTGGAGCTTTGaatagcagcaacagcaaagGAAAGGAGAGGAGAAGGCTGGCTGACAGAGCAGATCGTCCGttcttttttgtctctgttaatatttatatttataaatatatatttatataaatatatctaattATTTTGTTGGATCGTGCCTGGTGGATTGGAGCAATGTTCATCAGCAAAGTGAACGGCGTCGACTCTGTGCCCCACTGCAGCCCTGCATCTCCGGACGGGGACACCCTCCACGCAGGTTTCCAGCCCATGGAGACCACACAGGGGGTCCAGGCAGGCCGTGAGACGTCCGTCACTCCGTTTGTTCCAACGGTGACTGCGATCTCGACCACCCCAGACCTGCAGTGGATGGTCCAGCCCACCATCGTCACGTCCGTCTCGCCGTCTCCGGGCAGAGCTGCAGCCAATGAGGCGCAGAGCTCCCTGAAAACACACGGGGGCAAGGGGAAAAGCGCCTCCAGGAAGGGAAAAGTCGAGCAGCTCACACCCgaagaggaggaaaagaagagGATAAGGAGGGAGAGGAATAAGATGGCCGCAGCGAAGTGCCGCAACAGACGGAGagagctcacagacaccttgcaGGCTGAAACCGACAAGCTGGAGGAAGACAAAGCAGCTCTGCAGGCTGAGATTGCAAATCTTCTGAAGGAAAAGGAAAGACTTGAGTATGTCCTCTCCGCACATAAGCCTTTATGCCAGCTGCCCGAAGAGCTGGACAGCATTTTCCCAGAGTCGCCACAGTCTCTTCCTTCTTCGGATTCCTCCGTCAAGCTCCCAGAGGATGGTGTGcaggacacaccttctctgCAAGACTTGGAGGCTCCGTCCGTTCCATCCTCCGCTATCTCGGGGAACTCCAACATCCTGCTGTGCTCCAGCGCAGAAGTCAGCCTCTGTGACCTTGAACCGTCACTGGACGTCAAGGAGGAGCTCCTGGAAAACATCCTCAGTTCTGTGGATGAGGAcaggatctctgtggaaacagcACGCTCTGTCCCTGACATTGACCTCACTGGATCCCTGGGCATCACAGACTGGGAGACCCTGTACAAGTCTGTGGCCAATGACCTGGAACCCTTAAGCACCCCGGTGGTGAACACCTCTACCCCCACTTGCAGCAACTACCTGTCTGTCTTCACCTTTGCCTGCCCAGAGCTGGACTCTCTTGCCGAGGAACTGGATGGCTGCAAAGGTGGGGCACCCAAATCTGATTCCAACGTAGATATCCTTAACTCGCCCACACTTTTGGCCTTATAAACACCGGAATGAAACGGAGGTGTTGGATAGTGGTCTTGTGAAAGCCCTCTCTACTATCGGATATCACTGTGTTGTGATATCTGAGACGAGTGGTATTGATGTGAAGCCAGCAGTTCAGTGGCAGCATCTAAGAAATATGTAATGTGACCGAGATAGTGTTTATCCTCTTCCAGATAATTTTGATGTAGCTAAGAGCATGGAAAAATGATCCTATGGACAGTTATGAGCTATCTTCTGGTTCGAAAAAGCATGCGCAAAGATAAAGATCTCATCTAaatgaataagtaaataaataaattaatatataaatatatataaatgaacagacatatatgtatgtatcagatttatatttgtttgatctGCTGTGAGGTCTTCTGTAAGCTGTATCGTGcactgttcactgtgcagttttgtgttttttgatggCAATAGTTTATCAATGTTGTGCTTTAGTACACATTCCTGAAGTTCTTGCATACCTCAGTGTCATCATCAAACTGTGTTTTGACGTCATTAAGATGTTTAGAGTTTTCCATGAAAACATCCAGTGCTATCAACGATCAAGATGTATTTTatgataatttatttttctaccTTTTAAATTTTGACTTGTTTGTCAAATGAAAAGAGTTAAATGAGCATTGATTGCTTATGAattaatattcacattaaataTTCATGCAATGTGA

Function

symbol description
fos Enables several functions, including R-SMAD binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and identical protein binding activity. Involved in several processes, including cellular response to cadmium ion; cellular response to reactive oxygen species; and transmembrane receptor protein serine/threonine kinase signaling pathway. Located in nucleoplasm. Part of protein-DNA complex and transcription factor AP-1 complex. Biomarker of Pick's disease; autosomal dominant polycystic kidney disease; cervical squamous cell carcinoma; colorectal adenocarcinoma; and intestinal benign neoplasm (multiple).

NR:

description
PREDICTED: proto-oncogene c-Fos-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257356.3 True 2117 mRNA 0.47 4 28127393 28130890

Neighbor

gene id symbol gene type direction distance location
acyp1 acyp1 coding upstream 5686 28119021 ~ 28121707 (+)
nek9 nek9 coding upstream 14102 28103916 ~ 28113291 (+)
ndc80 ndc80 coding upstream 25457 28094363 ~ 28101936 (+)
ttc8 ttc8,LOC106591546 coding upstream 42118 28079573 ~ 28085275 (+)
LOC103040475 LOC108423515,LOC108269951 coding upstream 54799 28010514 ~ 28072594 (+)
jdp2 jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding downstream 3423 28134313 ~ 28150109 (+)
flvcr2 flvcr2,LOC106525280,LOC106571030,LOC108242486,LOC104964435 coding downstream 22045 28152935 ~ 28177704 (+)
ttll5 NA coding downstream 51537 28182427 ~ 28265327 (+)
ift43 ift43,LOC107688076 coding downstream 167070 28297960 ~ 28320492 (+)
LOC111193237 NA coding downstream 224684 28355574 ~ 28356809 (+)
G84001 NA non-coding upstream 204035 27923069 ~ 27923358 (+)
LOC111193235 LOC103459065 non-coding upstream 281427 27831977 ~ 27845966 (+)
G83972 NA non-coding upstream 422512 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 511826 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 858162 27268958 ~ 27269231 (+)
G84164 NA non-coding downstream 170843 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding downstream 197885 28328775 ~ 28331408 (+)
G84219 NA non-coding downstream 243058 28373948 ~ 28374517 (+)
G84264 NA non-coding downstream 456506 28587396 ~ 28587954 (+)
G84280 NA non-coding downstream 575003 28705893 ~ 28723051 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 295809 27824256 ~ 27831584 (+)
fam98b NA other upstream 305182 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1349905 26727823 ~ 26777488 (+)
spata7 NA other upstream 1728126 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1800055 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 839374 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 868612 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 910089 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 912327 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 941001 29071891 ~ 29078898 (+)

Expression


Co-expression Network