ndc80 (ndc80)


Basic Information

Item Value
gene id ndc80
gene name ndc80
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28094363 ~ 28101936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257358.3
aaaaaagaaaatatgcgAGTGACGTCACGCCGTGGTCCGTTGGAAGGCGTGTTGGCGGATATTTTTGAAAAGGACGGAGGAAGGAGAGCCGCACCGAAAACTGGATAGTGTTACTAAAATAAGAGTCAACAATGAGTCGAAGACCTAGCCGAAGATTTTCAGAGATGCCTTTGCGTGTAACAGATGGCAGAATGAGTATGGTGAATGCGACGCCACAGAACAAAGACAACGTATTTGGAAAGCTGAACATCCCAAAACCTCAGTCTGGTACATCAGAAAGGAGAACCAGCTTTTTTGGAAAAGGTGCTGGTGGTGGGGGCCAGAGGAACAGCTTGTTTGGCTCATATGGAGGCACAGAAAAGATTAAGGATCCAAGACCACTTCATGACAAAACATTTGTCCAACAGTGTATCAAACAGCTTTGTGAGTTCCTAGGAGATAATGGATTCCCTGGTACCATCACAGTAAAAGCTCTCCAGTCACCTTCTACAAAAGAGTTCCTGAAGATATTTGAGTTCATCTACAGTTTGCTGGACCCAACCTTTCAGTTGCCTACTACCAAGATTGAAGAGGAGATTCCAAGAATGTTCAAAGACTTAGGGTACCCATTTGCATTGTCAAAAAGCTCCATGTACTCGATTGGGGCTCCACATACCTGGCCTCAGGCTCTAGGTGCACTCATTTGGCTCATTGATGCAGTTAAAATCTTCAACAGTATAAAAGGTCAGAATCTGCTGTTTGCAGACTTCTCAGATGGAACCACCGAGCTAGAGGAGGGAGTTGAGTATAATAAGCTGTTCTTAGACTACTGCTCTAAGACCTACAACAAGTTCATGCAGGGAGCAGATACCTTTGAAGATGAGGATTTGGAGTATCTCAGTCATCTGAAGAGGTTGTACAATGTGGATGAAGCCCTACTAGAGTCCCAGCATGAAAAATACAGGATTTTGATGGAAGAGGTTGAGAGACTGGAGAAAGAGAGCCATACTGACAGGCTAATGGCACAGAGGACTGATAAGCTGAGGTTGCAGACTGATCTGCAGAAATTACAAAGCTACCGTACACACATGGAGGCATTTAAAAGTCACCTGGAGAATAAGGTTGCTGGGCTGACTGAAGAGATGGAGGCTGCtgacCTTCAGCTAGAGAGTCTGAAGCAGGAGAAGGGCAGACTGCAGCATATTCTAGAGAATCAGAAGTTCACCCCAGCCGATATTGAACGGATCAACAGGGAGCGGAATGAACTACAGCAGACCGTCAGCAGCCTGAGCCGTAGTCTAGAAGAAGCCCAGCAGCTGGCATGGAATGAAGAAATCACCCTGGTTAAAACCAAGGAGAGAGCAGAGGTCAAGTTGGCAGAGTACCACAAACTGGCACGAATGCTTAAGCTCATCCCTCAGTCTGCAGAGAATGCCTGTGGCCATGACTTTGAGATCAAAACAGTCAGTGACTATGGTCCCACCACTGCTACTCTGATCCGAACACAGATACAGAATCCTCTCAAAAACATGCTTGTGGATGTAGAAGAGGAGTTCAGCAGAATGACCAATATGAAACTTAGCCTGGAGGAGACAGTGGAGCAGGTGAATTCCAACATTTCTGAGAAGATGAATGACATAAAGCAGATAAAGGAGCAGATTCGTAGACTGGATCAACAACTGGAGAATGACATGCAGGAGCTCGCTCAGGAAGAGGAAAAGTGGGCAGCAGATGTAGACGGCgctgaaagaaacaaaaagcttCTGGAAAAGAAGGTTATGGATGGCTATGAAGAGGCTGAAGAGCATCTTAAAGCAGCCCAACAACAATACCACCTTGTGCTTCAGGAGACCAAAGAGGAGAGCCGGTTGGTAGCAAACAATTTGACTCATGTCTTCACCGCTGCAGTTAACCACTTGGGTATAGTTGAGAAACAATGTAATGACCAACTTAAAAGGATGGACAAGGTTAATGAAATTATCCGTGAAGACCAAGCAGACCTGCAACAGCTGAAGGAGATGATAGAAAACTTTGTATCTAGAGCAAACAGCCTTGAATGACTGAAGGGGAAACCAGTTTGTAAATAGTTTTGCACTCTTATTACTAATGTTAAGACTTTTCTTCTTTCTACTCTTTACTCTTTgtacactgtttattaaaatgtgttctgttttatatgttgctGTTGTAATAAACCTATtttaagattttcttttattaaa
>XM_007257359.3
aaaaaaagaaaatatgcgAGTGACGTCACGCCGTGGTCCGTTGGAAGGCGTGTTGGCGGATATTTTTGAAAAGGACGGAGGAAGGAGAGCCGCACCGAAAACTGGATAGTGTTACTAAAATAAGGTATTTTTGAGGAGATTTAGCGCACCCTGAGCGAAAAACGAATGCATGAGGCGGAGGAATGCgagaaatgctAGTCAACAATGAGTCGAAGACCTAGCCGAAGATTTTCAGAGATGCCTTTGCGTGTAACAGATGGCAGAATGAGTATGGTGAATGCGACGCCACAGAACAAAGACAACGTATTTGGAAAGCTGAACATCCCAAAACCTCAGTCTGGTACATCAGAAAGGAGAACCAGCTTTTTTGGAAAAGGTGCTGGTGGTGGGGGCCAGAGGAACAGCTTGTTTGGCTCATATGGAGGCACAGAAAAGATTAAGGATCCAAGACCACTTCATGACAAAACATTTGTCCAACAGTGTATCAAACAGCTTTGTGAGTTCCTAGGAGATAATGGATTCCCTGGTACCATCACAGTAAAAGCTCTCCAGTCACCTTCTACAAAAGAGTTCCTGAAGATATTTGAGTTCATCTACAGTTTGCTGGACCCAACCTTTCAGTTGCCTACTACCAAGATTGAAGAGGAGATTCCAAGAATGTTCAAAGACTTAGGGTACCCATTTGCATTGTCAAAAAGCTCCATGTACTCGATTGGGGCTCCACATACCTGGCCTCAGGCTCTAGGTGCACTCATTTGGCTCATTGATGCAGTTAAAATCTTCAACAGTATAAAAGGTCAGAATCTGCTGTTTGCAGACTTCTCAGATGGAACCACCGAGCTAGAGGAGGGAGTTGAGTATAATAAGCTGTTCTTAGACTACTGCTCTAAGACCTACAACAAGTTCATGCAGGGAGCAGATACCTTTGAAGATGAGGATTTGGAGTATCTCAGTCATCTGAAGAGGTTGTACAATGTGGATGAAGCCCTACTAGAGTCCCAGCATGAAAAATACAGGATTTTGATGGAAGAGGTTGAGAGACTGGAGAAAGAGAGCCATACTGACAGGCTAATGGCACAGAGGACTGATAAGCTGAGGTTGCAGACTGATCTGCAGAAATTACAAAGCTACCGTACACACATGGAGGCATTTAAAAGTCACCTGGAGAATAAGGTTGCTGGGCTGACTGAAGAGATGGAGGCTGCtgacCTTCAGCTAGAGAGTCTGAAGCAGGAGAAGGGCAGACTGCAGCATATTCTAGAGAATCAGAAGTTCACCCCAGCCGATATTGAACGGATCAACAGGGAGCGGAATGAACTACAGCAGACCGTCAGCAGCCTGAGCCGTAGTCTAGAAGAAGCCCAGCAGCTGGCATGGAATGAAGAAATCACCCTGGTTAAAACCAAGGAGAGAGCAGAGGTCAAGTTGGCAGAGTACCACAAACTGGCACGAATGCTTAAGCTCATCCCTCAGTCTGCAGAGAATGCCTGTGGCCATGACTTTGAGATCAAAACAGTCAGTGACTATGGTCCCACCACTGCTACTCTGATCCGAACACAGATACAGAATCCTCTCAAAAACATGCTTGTGGATGTAGAAGAGGAGTTCAGCAGAATGACCAATATGAAACTTAGCCTGGAGGAGACAGTGGAGCAGGTGAATTCCAACATTTCTGAGAAGATGAATGACATAAAGCAGATAAAGGAGCAGATTCGTAGACTGGATCAACAACTGGAGAATGACATGCAGGAGCTCGCTCAGGAAGAGGAAAAGTGGGCAGCAGATGTAGACGGCgctgaaagaaacaaaaagcttCTGGAAAAGAAGGTTATGGATGGCTATGAAGAGGCTGAAGAGCATCTTAAAGCAGCCCAACAACAATACCACCTTGTGCTTCAGGAGACCAAAGAGGAGAGCCGGTTGGTAGCAAACAATTTGACTCATGTCTTCACCGCTGCAGTTAACCACTTGGGTATAGTTGAGAAACAATGTAATGACCAACTTAAAAGGATGGACAAGGTTAATGAAATTATCCGTGAAGACCAAGCAGACCTGCAACAGCTGAAGGAGATGATAGAAAACTTTGTATCTAGAGCAAACAGCCTTGAATGACTGAAGGGGAAACCAGTTTGTAAATAGTTTTGCACTCTTATTACTAATGTTAAGACTTTTCTTCTTTCTACTCTTTACTCTTTgtacactgtttattaaaatgtgttctgttttatatgttgctGTTGTAATAAACCTATtttaagattttcttttattaaa

Function

symbol description
ndc80 Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore; mitotic spindle organization; and positive regulation of mitotic cell cycle spindle assembly checkpoint. Predicted to act upstream of or within cell division. Predicted to be located in kinetochore. Predicted to be part of Ndc80 complex. Is expressed in proliferative region. Orthologous to human NDC80 (NDC80 kinetochore complex component).

NR:

description
PREDICTED: kinetochore protein NDC80 homolog

GO:

id name namespace
GO:0007052 mitotic spindle organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11547 NDC80, HEC1, TID3; kinetochore protein NDC80

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257358.3 False 2201 mRNA 0.44 17 28094364 28101936
XM_007257359.3 True 2274 mRNA 0.44 17 28094363 28101936

Neighbor

gene id symbol gene type direction distance location
ttc8 ttc8,LOC106591546 coding upstream 9088 28079573 ~ 28085275 (+)
LOC103040475 LOC108423515,LOC108269951 coding upstream 21769 28010514 ~ 28072594 (+)
LOC103041699 prima1,LOC108423434,LOC108270468 coding upstream 173190 27906826 ~ 27921173 (+)
LOC103042002 LOC108423517 coding upstream 199380 27881028 ~ 27894983 (+)
ddx24 ddx24 coding upstream 224390 27860194 ~ 27869973 (+)
nek9 nek9 coding downstream 1980 28103916 ~ 28113291 (+)
acyp1 acyp1 coding downstream 17085 28119021 ~ 28121707 (+)
LOC103036705 fos,LOC108423428,LOC107702235 coding downstream 25457 28127393 ~ 28130890 (+)
jdp2 jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding downstream 32377 28134313 ~ 28150109 (+)
flvcr2 flvcr2,LOC106525280,LOC106571030,LOC108242486,LOC104964435 coding downstream 50999 28152935 ~ 28177704 (+)
G84001 NA non-coding upstream 171005 27923069 ~ 27923358 (+)
LOC111193235 LOC103459065 non-coding upstream 248397 27831977 ~ 27845966 (+)
G83972 NA non-coding upstream 389482 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 478796 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 825132 27268958 ~ 27269231 (+)
G84164 NA non-coding downstream 199797 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding downstream 226839 28328775 ~ 28331408 (+)
G84219 NA non-coding downstream 272012 28373948 ~ 28374517 (+)
G84264 NA non-coding downstream 485460 28587396 ~ 28587954 (+)
G84280 NA non-coding downstream 603957 28705893 ~ 28723051 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 262779 27824256 ~ 27831584 (+)
fam98b NA other upstream 272152 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1316875 26727823 ~ 26777488 (+)
spata7 NA other upstream 1695096 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1767025 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 868328 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 897566 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 939043 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 941281 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 969955 29071891 ~ 29078898 (+)

Expression


Co-expression Network