LOC103041699 (prima1,LOC108423434,LOC108270468)


Basic Information

Item Value
gene id LOC103041699
gene name prima1,LOC108423434,LOC108270468
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27906826 ~ 27921173 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257375.3
agcagccCTGCGCAGAGAGGAACATCCAGAGGAGCAGGCTCGCCACGCTTCATGAACTTTCCCGCTGATGATTGGCGCTCGCCTGTGTTTACTCCTCTGCGCCTGGCCCAGTATGAAGCGAGCGGACGGCTGCGCGTGGCTGCGGGACGCAGAAAGGGCAGGACCAGCGCGCGCATAGTTGTGGGGGATCACGCAGAGGGGGGAATGCGTGCACCCAGTGCAACTGACCACTCGACTGCCTCGTGCGTATCTGGCCACGACTGGAGTGGAAGAAGAAGATGTTGTGAAAAGCCTCTCGTGCCGGAGGCAGCACGCGCGCTTTATAAGGCAGAGAGGCTGAATATGGGGCTGCAGGGAAGAGACTATCAGCTCTGAACTCAGGAAAGTTTCCGTAGAAGAGATTGACTGTTCTAATACTAATAAAGATAGACCATTAGGTGTTCGGCTGTGTGGAGCGCTGCTATGCTGGACTGGACGGGAAGCAGCCAACTGAGCTCTAGCTGAGCTGTTTGCAGGACCAGCCAGAGCGGACGAGTCCCTGCCAGCAGTCCAGCCCAGTCCTATGCGTCCTCCGTTTGCCTGCACGTTGATCTGTGCGCGAGAAGAGCTGAGGAGGATCAATGCTGCTGCTTCCACACACAGTGACCCTCACACTCCGCCTCTGCCCGCTTGTCTTCGGGCACTGCTTTCTCtcctcactgctgctgctgtgccaGgctgagCTTCAGAGGTCATGCTCACAGCTTGGCACTCAGAGAGGAGGTGAGCAGTGCCAATCGCCCTGCCACTGCAGGACCTACCCACCTCTACCTCCCCCACCTCCTCCCCCACCTCCTCCTCGGCTACTGATCCCCACAGTGGCTGAGCCTCCCAGTGTTCCATTGAGACCCTGGTGGACGGACTTCATTGTGGTTGGGACAGTAGGATGTACTTCAGCTGTCTTTCTACTATTAACTCTCATCATCTGCTACAAGGCCATTAAAAGGAAACCTCTTAGAAAAGAGGAGAATGGTACCAATCGTGGAGAATACGCCATGAGCTCCCGCAAAAAGAAGAAGACCAAAAACGCTGGCACTAATAATGTTGTGGTGtgaaatatacacacataccaAGACTAACTAAGGGCAAATGATGTCTTCGGCCATTGTGCTGCATCACTGCAGCAGGAGTGTAAAAGTAAAACACACGGCTAATATCCAAGCAGAAAACAGTGGAAAGGAACAAGCTTGATCTGTTTGATCAGCACAGACTGCACTGTTGCAGGACTGGCCTGCACTGGCCGAGAGACTTACTGGCAAACTGTGGCTTAAAGATTCTTAAGAGTAATTGCAtgtgtttgtttacttatttgttaatttatttacacaaaTTTCATGATTCTCATGTCAACATCCAAAGCTAGAGGATTCATTTTGCATTTGATGCACTGCTCTGAAAAACAAAATTGACTTTGTAAGTATccttttttggttttgtttatttatttgtttgtttgttagcttGTTTATTTCCCCAGATGCTCATATGTGAACATGCTTAGCTAGATGcaccattttacatttaatgcaCTGCTCTAGTAAACAAAATGGAATTTGTAAGTGtaggttttccttttttttttgtttgtttatttatgcttAAGTTTACATTGGATGCACTGCTCTGAAAACATAAGCATttacattttgttatgttgtttttttctgatgctCATATGTCAATGTGTTAAGCCAGATACTTCATTTTACATTGATGCACTgctctaaaaaacaaaatgcaatttGTAAgtgtagcctttttttttatttattttatgtttgctAAATTATTACCAACCATCAGGAATGTTTCTGCAGAGAAAACgcctaaaatacattattttgcaTGGTATATTCTGGACACCTAGCGAAAAATTCTGCAATCATCTATAGTTTGGTCATAATACACAACCAAGCCTGTGGACTCATAtctgtgtagtgtatataaaaCCTTGTGTCCTATATCATTGAGATATGCCTATGCACAGACACTTACGCAAGGTATGTTACATCATCACTCTGTGATGAACACTGGCAGTCTTCCCGGTGTTCCCTCGCACTGTATCCGTGGTTTACCGTAGTTTCATATGTACAGTGATACTAACATTCCAGGTTTGAGGCTATATCCTCCTCGAGGCTGGAGTGCTAAACACCCCCTTGTCTGTGCCAAATTCTAGTGATTACAAGAACAGTGGACAACTGCGCAGGAGGCCCTTGCTCATGTTCAGATGTGATTACATGCTAATTGTTCCCTTCACAAGCCACCGGACAAGGACCCTTCTGCAATAGTACGACCAGTAAGTTTAAGCTGTCTGATGTTCACCGCCATTTAATATGTGTCTACGAGAAgagaaaaagtgtttgtttcaTATTGTGTGACAATGCCATACAAACCTCACATCGAATCATTAGGCCATTCGAAAGAAAATGAATGTCTGTAACATTGCTGATGTtctaaaaatatcataaatatcatGCTACAGTggtaaactatatatataaatgtatacatatataaaaaagtattaccATGAGAGTTGAGTTGTGGGATATAAATTACAATAGCTGCAGTTGGTTCAGTTATTTCAGTGGTCCAAACATCATGTTTTGTGCCCGTGTGTTGTCTGACGTCTAGACATTTACTTGTCCAAACCTGTAAGATACTTTTTACCTGCACTGTACCAAAAGACTCCTATAAAATCTCAGAAcgctataataaaataacaaaaaataatatgtacAAAAGAGAAGGAATGATGCATGAATGTAAATATTGACTTCAGCATATCTGCCTTTTGGACTGTTACTCACTCATACAGAGTGTCTGAGGATGTTTATACATAGtagaaataaaacaatgcaaTCTAACGTGAA

Function

symbol description
prima1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PRIMA1 (proline rich membrane anchor 1).

NR:

description
proline-rich membrane anchor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257375.3 True 2912 mRNA 0.44 4 27906826 27921173

Neighbor

gene id symbol gene type direction distance location
LOC103042002 LOC108423517 coding upstream 11843 27881028 ~ 27894983 (+)
ddx24 ddx24 coding upstream 36853 27860194 ~ 27869973 (+)
LOC103042318 LOC103042318,LOC108423523 coding upstream 48085 27855741 ~ 27858741 (+)
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding upstream 51444 27848677 ~ 27855382 (+)
spred1 spred1 coding upstream 92918 27770793 ~ 27813908 (+)
LOC103040475 LOC108423515,LOC108269951 coding downstream 89341 28010514 ~ 28072594 (+)
ttc8 ttc8,LOC106591546 coding downstream 158400 28079573 ~ 28085275 (+)
ndc80 ndc80 coding downstream 173190 28094363 ~ 28101936 (+)
nek9 nek9 coding downstream 182743 28103916 ~ 28113291 (+)
acyp1 acyp1 coding downstream 197848 28119021 ~ 28121707 (+)
LOC111193235 LOC103459065 non-coding upstream 60860 27831977 ~ 27845966 (+)
G83972 NA non-coding upstream 201945 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 291259 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 637595 27268958 ~ 27269231 (+)
G83824 NA non-coding upstream 662558 27243756 ~ 27244268 (+)
G84001 NA non-coding downstream 1896 27923069 ~ 27923358 (+)
G84164 NA non-coding downstream 380560 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding downstream 407602 28328775 ~ 28331408 (+)
G84219 NA non-coding downstream 452775 28373948 ~ 28374517 (+)
G84264 NA non-coding downstream 666223 28587396 ~ 28587954 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 75242 27824256 ~ 27831584 (+)
fam98b NA other upstream 84615 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1129338 26727823 ~ 26777488 (+)
spata7 NA other upstream 1507559 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1579488 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 1049091 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 1078329 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 1119806 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 1122044 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 1150718 29071891 ~ 29078898 (+)

Expression


Co-expression Network